Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48497 * 109.47378 * 269.99718 * 3 2 1 5 5 H 1.48498 * 109.47222 * 30.00084 * 3 2 1 6 6 H 1.48506 * 109.46855 * 149.99975 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.46851 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00313 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47396 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47254 * 64.99580 * 12 11 10 14 14 C 1.46904 * 111.00029 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46950 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.70590 * 59.41801 * 15 14 13 17 17 C 1.53498 * 109.70715 * 180.02562 * 15 14 13 18 18 C 1.53252 * 108.16195 * 182.08992 * 17 15 14 19 19 C 1.50444 * 109.43589 * 313.17373 * 18 17 15 20 20 C 1.30686 * 122.49925 * 17.46035 * 19 18 17 21 21 O 1.35129 * 123.34101 * 359.61293 * 20 19 18 22 22 H 0.97003 * 120.00101 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47276 * 60.00900 * 9 7 2 24 24 H 1.08998 * 109.47660 * 300.00675 * 9 7 2 25 25 H 1.09001 * 109.46993 * 59.99365 * 11 10 9 26 26 H 1.09004 * 109.46505 * 300.00140 * 11 10 9 27 27 H 1.09002 * 109.47153 * 304.99576 * 12 11 10 28 28 H 1.09001 * 109.46832 * 184.99767 * 12 11 10 29 29 H 1.00908 * 110.99847 * 56.04959 * 13 12 11 30 30 H 1.08995 * 109.47167 * 300.00240 * 14 13 12 31 31 H 1.09003 * 109.46442 * 60.00214 * 14 13 12 32 32 H 1.09002 * 109.72623 * 301.75216 * 17 15 14 33 33 H 1.08994 * 109.72830 * 62.37618 * 17 15 14 34 34 H 1.08996 * 109.47889 * 73.16284 * 18 17 15 35 35 H 1.08999 * 109.48210 * 193.18642 * 18 17 15 36 36 H 1.08004 * 118.75258 * 197.47827 * 19 18 17 37 37 H 1.08002 * 118.32992 * 179.56708 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8755 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4072 -5.8879 1.2553 14 6 4.4579 -6.9140 1.2917 15 6 5.2247 -6.8119 2.6117 16 1 4.5392 -6.9549 3.4470 17 6 6.3248 -7.8816 2.6553 18 6 7.0343 -7.7822 4.0101 19 6 7.3541 -6.3417 4.3032 20 6 6.7736 -5.3521 3.6774 21 8 5.8453 -5.5270 2.7111 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 0.9451 -4.9822 -0.8913 26 1 0.9446 -4.9827 0.8887 27 1 3.3221 -5.7956 -0.8418 28 1 2.1820 -6.9375 -0.0904 29 1 2.7947 -5.9696 2.0531 30 1 4.0042 -7.9017 1.2109 31 1 5.1446 -6.7603 0.4593 32 1 5.8807 -8.8708 2.5444 33 1 7.0396 -7.7071 1.8513 34 1 6.3837 -8.1762 4.7908 35 1 7.9577 -8.3606 3.9801 36 1 8.0916 -6.1168 5.0595 37 1 7.0494 -4.3432 3.9466 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379966352.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = -76.893445 kcal Electronic energy + Delta-G solvation = -17004.234654 eV Core-core repulsion = 14167.960384 eV Total energy + Delta-G solvation = -2836.274270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.10892 -37.12161 -35.50941 -33.96166 -32.70686 -31.93012 -29.03759 -26.98691 -25.81811 -23.72114 -22.26346 -22.20167 -21.44686 -18.99446 -16.93912 -16.39732 -16.21162 -15.67823 -15.34757 -15.01485 -14.67281 -14.18661 -14.06241 -13.56244 -13.54918 -12.99736 -12.91348 -12.72735 -12.17665 -11.92049 -11.67155 -11.22083 -11.02019 -10.79363 -10.75814 -10.69004 -10.52925 -10.27173 -9.89896 -9.00035 -8.72228 -8.39572 -8.14026 -8.04600 -6.02672 -4.03045 2.29320 3.36661 3.41102 3.44912 3.48040 4.12963 4.42950 4.56292 4.75126 4.78666 4.95490 5.09017 5.12101 5.24810 5.33889 5.34053 5.43229 5.52980 5.58043 5.70367 5.71225 5.78724 5.96385 6.05561 6.14210 6.22948 6.35394 6.49609 7.15842 7.20837 7.52340 7.56620 7.70942 7.90109 8.26067 8.71333 9.12314 9.61540 11.09159 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.004484 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.512772 B = 6243.024126 C = 7149.120595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.066 3.934 13 N -0.668 5.668 14 C 0.066 3.934 15 C 0.093 3.907 16 H 0.068 0.932 17 C -0.155 4.155 18 C -0.076 4.076 19 C -0.305 4.305 20 C 0.068 3.932 21 O -0.294 6.294 22 H 0.263 0.737 23 H 0.002 0.998 24 H 0.003 0.997 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.338 0.662 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.288 -17.428 6.201 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.298 6.298 11 C -0.013 4.013 12 C -0.063 4.063 13 N -0.299 5.299 14 C -0.063 4.063 15 C 0.036 3.964 16 H 0.086 0.914 17 C -0.193 4.193 18 C -0.114 4.114 19 C -0.325 4.325 20 C 0.004 3.996 21 O -0.206 6.206 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.157 0.843 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.672 -16.636 5.815 20.602 hybrid contribution -0.419 -0.130 0.412 0.602 sum 10.253 -16.766 6.227 20.615 Atomic orbital electron populations 1.69970 1.06109 1.26990 1.51092 1.24947 0.94951 0.99390 0.95310 0.86345 0.79744 0.82305 0.78164 1.20542 1.21175 1.19563 1.21090 0.94167 0.89352 1.50094 0.91449 1.20180 0.88869 0.83997 0.95061 1.87978 1.34541 1.12286 1.94994 1.22218 0.93807 0.86456 0.98815 1.21991 0.95752 0.95584 0.93010 1.60217 1.16000 1.49431 1.04296 1.22002 0.94575 0.93158 0.96598 1.22503 0.93222 0.82312 0.98348 0.91411 1.22256 0.98780 0.99459 0.98827 1.20271 1.00245 0.94631 0.96208 1.22412 1.07572 0.94592 1.07894 1.22172 0.89301 0.99266 0.88848 1.86182 1.51440 1.33101 1.49925 0.92798 0.98048 0.97923 0.94205 0.94841 0.90321 0.94981 0.84340 0.93923 0.90037 0.90438 0.90513 0.91606 0.90972 0.86569 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.51 29.54 -169.99 -5.02 17.49 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -15.58 9.43 -34.44 -0.32 -15.90 16 8 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 9 C 0.19 5.52 5.69 36.00 0.20 5.72 16 10 O -0.38 -9.61 10.27 -35.23 -0.36 -9.97 16 11 C 0.07 1.24 6.22 37.16 0.23 1.47 16 12 C 0.07 1.00 6.07 -3.83 -0.02 0.98 16 13 N -0.67 -10.23 6.35 -113.78 -0.72 -10.96 16 14 C 0.07 0.79 5.40 -3.82 -0.02 0.77 16 15 C 0.09 1.09 3.05 -26.47 -0.08 1.01 16 16 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.16 -1.44 5.54 -26.34 -0.15 -1.59 16 18 C -0.08 -0.70 6.23 -27.88 -0.17 -0.87 16 19 C -0.30 -3.22 9.97 -36.06 -0.36 -3.58 16 20 C 0.07 0.84 10.88 29.10 0.32 1.15 16 21 O -0.29 -4.37 9.94 -17.09 -0.17 -4.54 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 24 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.34 4.84 8.73 -39.29 -0.34 4.50 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -33.65 311.46 -7.55 -41.20 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.23 Total: -1.66 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.47 Total: -9.31 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.01 Total: -37.90 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.53 Total: -14.51 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.65 -7.55 -41.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379966352.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.698 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds