Wall clock time and date at job start Mon Mar 30 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48503 * 109.46887 * 270.00214 * 3 2 1 5 5 H 1.48498 * 109.47087 * 30.00123 * 3 2 1 6 6 H 1.48498 * 109.47150 * 150.00411 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99950 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00030 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46995 * 179.97438 * 11 10 9 13 13 N 1.46891 * 109.47126 * 64.99888 * 12 11 10 14 14 C 1.46899 * 110.99876 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47223 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.73685 * 305.60282 * 15 14 13 17 17 C 1.53506 * 109.71056 * 185.00264 * 15 14 13 18 18 C 1.53248 * 108.15907 * 177.90927 * 17 15 14 19 19 C 1.50445 * 109.44283 * 46.82524 * 18 17 15 20 20 C 1.30688 * 122.49178 * 342.49269 * 19 18 17 21 21 O 1.35136 * 123.34549 * 0.48412 * 20 19 18 22 22 H 0.96994 * 119.99868 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47431 * 60.00281 * 9 7 2 24 24 H 1.08992 * 109.47096 * 299.99965 * 9 7 2 25 25 H 1.09000 * 109.46975 * 59.99796 * 11 10 9 26 26 H 1.08997 * 109.47190 * 299.99877 * 11 10 9 27 27 H 1.08999 * 109.47203 * 304.99789 * 12 11 10 28 28 H 1.09008 * 109.46690 * 185.00009 * 12 11 10 29 29 H 1.00904 * 111.00292 * 56.04667 * 13 12 11 30 30 H 1.09006 * 109.47324 * 59.99963 * 14 13 12 31 31 H 1.09001 * 109.47456 * 300.00229 * 14 13 12 32 32 H 1.08998 * 109.72178 * 297.57948 * 17 15 14 33 33 H 1.09001 * 109.72543 * 58.24074 * 17 15 14 34 34 H 1.08996 * 109.47667 * 166.81356 * 18 17 15 35 35 H 1.08995 * 109.47982 * 286.83194 * 18 17 15 36 36 H 1.07996 * 118.75936 * 162.51597 * 19 18 17 37 37 H 1.08000 * 118.32795 * 180.47402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8754 -0.0024 12 6 2.6480 -5.9562 -0.0043 13 7 3.4091 -5.8890 1.2502 14 6 4.4598 -6.9150 1.2841 15 6 5.2288 -6.8142 2.6031 16 1 5.6008 -5.7982 2.7355 17 6 6.4060 -7.7993 2.5926 18 6 7.1805 -7.6318 3.9043 19 6 6.2138 -7.6053 5.0568 20 6 4.9367 -7.3786 4.8968 21 8 4.3667 -7.1580 3.6915 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 0.9444 -4.9818 -0.8922 26 1 0.9453 -4.9831 0.8877 27 1 3.3208 -5.7949 -0.8466 28 1 2.1818 -6.9375 -0.0944 29 1 2.7979 -5.9713 2.0489 30 1 5.1453 -6.7608 0.4508 31 1 4.0060 -7.9027 1.2032 32 1 6.0311 -8.8197 2.5143 33 1 7.0605 -7.5815 1.7486 34 1 7.8705 -8.4665 4.0280 35 1 7.7411 -6.6975 3.8787 36 1 6.5894 -7.7798 6.0542 37 1 4.3046 -7.3671 5.7724 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379966353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:23 Heat of formation + Delta-G solvation = -80.252190 kcal Electronic energy + Delta-G solvation = -16924.611023 eV Core-core repulsion = 14088.191107 eV Total energy + Delta-G solvation = -2836.419916 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21876 -37.12090 -35.49874 -34.06303 -32.72981 -31.96643 -29.05308 -27.01641 -25.85810 -23.77706 -22.29546 -22.21303 -21.41436 -19.01650 -17.06583 -16.38149 -16.15726 -15.92250 -15.46506 -15.03165 -14.56708 -14.28827 -14.04353 -13.74366 -13.50290 -13.09057 -12.88112 -12.71537 -12.16994 -11.87984 -11.72426 -11.24534 -11.05626 -10.82866 -10.78170 -10.71117 -10.56888 -10.31735 -9.91672 -9.02433 -8.74251 -8.51844 -8.17777 -8.06721 -6.04592 -4.05361 2.17895 3.33801 3.34790 3.39391 3.45729 4.13709 4.40865 4.54929 4.71823 4.84797 4.94236 5.04703 5.14941 5.24895 5.31878 5.39440 5.45317 5.49282 5.62601 5.67038 5.71908 5.75308 5.97662 6.06017 6.13574 6.17607 6.34599 6.39761 7.15645 7.20254 7.50532 7.51078 7.62112 7.87446 8.23867 8.68993 9.09553 9.59279 11.07204 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.004059 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.566433 B = 6896.930279 C = 7399.469032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.381 6.381 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.675 5.675 14 C 0.069 3.931 15 C 0.089 3.911 16 H 0.085 0.915 17 C -0.154 4.154 18 C -0.080 4.080 19 C -0.292 4.292 20 C 0.062 3.938 21 O -0.321 6.321 22 H 0.263 0.737 23 H 0.002 0.998 24 H 0.004 0.996 25 H 0.040 0.960 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.347 0.653 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.355 -17.492 6.283 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.300 6.300 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.307 5.307 14 C -0.060 4.060 15 C 0.033 3.967 16 H 0.103 0.897 17 C -0.192 4.192 18 C -0.117 4.117 19 C -0.311 4.311 20 C -0.001 4.001 21 O -0.235 6.235 22 H 0.072 0.928 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.166 0.834 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.611 -16.843 5.987 20.787 hybrid contribution -0.260 0.051 0.296 0.397 sum 10.350 -16.792 6.283 20.702 Atomic orbital electron populations 1.69970 1.06103 1.27026 1.50949 1.24950 0.94960 0.99399 0.95285 0.86342 0.79709 0.82316 0.78161 1.20531 1.21144 1.19609 1.21078 0.94109 0.89379 1.50274 0.91513 1.20184 0.88874 0.83929 0.95133 1.87950 1.34679 1.12373 1.95031 1.22228 0.93873 0.86303 0.98928 1.21986 0.95761 0.95732 0.92926 1.60335 1.16688 1.48896 1.04798 1.21982 0.95310 0.93733 0.95022 1.22652 0.89826 0.98627 0.85570 0.89713 1.22240 0.97881 1.00227 0.98828 1.20312 0.97024 1.02141 0.92209 1.22476 0.95214 1.13075 1.00356 1.21998 0.94579 0.96102 0.87389 1.85897 1.37356 1.83682 1.16589 0.92760 0.98014 0.97855 0.94161 0.94714 0.90401 0.94828 0.83424 0.89298 0.94858 0.90897 0.90026 0.90893 0.91143 0.86438 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -15.49 9.43 -34.44 -0.32 -15.81 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.48 5.69 36.01 0.20 5.69 16 10 O -0.38 -9.56 10.27 -35.23 -0.36 -9.92 16 11 C 0.06 1.24 6.22 37.16 0.23 1.47 16 12 C 0.06 1.00 6.07 -3.83 -0.02 0.97 16 13 N -0.68 -10.44 6.45 -113.78 -0.73 -11.18 16 14 C 0.07 0.84 5.41 -3.82 -0.02 0.82 16 15 C 0.09 1.05 3.08 -26.47 -0.08 0.97 16 16 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.15 -1.43 5.54 -26.34 -0.15 -1.58 16 18 C -0.08 -0.72 6.23 -27.88 -0.17 -0.90 16 19 C -0.29 -2.84 9.97 -36.06 -0.36 -3.20 16 20 C 0.06 0.66 10.88 29.10 0.32 0.98 16 21 O -0.32 -4.08 9.63 -17.11 -0.16 -4.24 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.35 5.38 8.34 -39.29 -0.33 5.05 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -32.71 310.90 -7.55 -40.26 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -6.21 Total: -1.05 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.47 Total: -9.06 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.00 Total: -37.98 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.53 Total: -14.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.71 -7.55 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379966353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.997 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds