Wall clock time and date at job start Mon Mar 30 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00164 * 2 1 4 4 H 1.48503 * 109.46887 * 270.00214 * 3 2 1 5 5 H 1.48498 * 109.47087 * 30.00123 * 3 2 1 6 6 H 1.48498 * 109.47150 * 150.00411 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99950 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.46957 * 179.97438 * 9 7 2 11 11 C 1.42903 * 114.00030 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46995 * 179.97438 * 11 10 9 13 13 N 1.46891 * 109.47126 * 64.99888 * 12 11 10 14 14 C 1.46899 * 110.99876 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47223 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.73685 * 305.60282 * 15 14 13 17 17 C 1.53506 * 109.71056 * 185.00264 * 15 14 13 18 18 C 1.53248 * 108.15907 * 177.90927 * 17 15 14 19 19 C 1.50445 * 109.44283 * 46.82524 * 18 17 15 20 20 C 1.30688 * 122.49178 * 342.49269 * 19 18 17 21 21 O 1.35136 * 123.34549 * 0.48412 * 20 19 18 22 22 H 0.96994 * 119.99868 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47431 * 60.00281 * 9 7 2 24 24 H 1.08992 * 109.47096 * 299.99965 * 9 7 2 25 25 H 1.09000 * 109.46975 * 59.99796 * 11 10 9 26 26 H 1.08997 * 109.47190 * 299.99877 * 11 10 9 27 27 H 1.08999 * 109.47203 * 304.99789 * 12 11 10 28 28 H 1.09008 * 109.46690 * 185.00009 * 12 11 10 29 29 H 1.00904 * 111.00292 * 56.04667 * 13 12 11 30 30 H 1.09006 * 109.47324 * 59.99963 * 14 13 12 31 31 H 1.09001 * 109.47456 * 300.00229 * 14 13 12 32 32 H 1.08998 * 109.72178 * 297.57948 * 17 15 14 33 33 H 1.09001 * 109.72543 * 58.24074 * 17 15 14 34 34 H 1.08996 * 109.47667 * 166.81356 * 18 17 15 35 35 H 1.08995 * 109.47982 * 286.83194 * 18 17 15 36 36 H 1.07996 * 118.75936 * 162.51597 * 19 18 17 37 37 H 1.08000 * 118.32795 * 180.47402 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0017 11 6 1.5650 -4.8754 -0.0024 12 6 2.6480 -5.9562 -0.0043 13 7 3.4091 -5.8890 1.2502 14 6 4.4598 -6.9150 1.2841 15 6 5.2288 -6.8142 2.6031 16 1 5.6008 -5.7982 2.7355 17 6 6.4060 -7.7993 2.5926 18 6 7.1805 -7.6318 3.9043 19 6 6.2138 -7.6053 5.0568 20 6 4.9367 -7.3786 4.8968 21 8 4.3667 -7.1580 3.6915 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 0.9444 -4.9818 -0.8922 26 1 0.9453 -4.9831 0.8877 27 1 3.3208 -5.7949 -0.8466 28 1 2.1818 -6.9375 -0.0944 29 1 2.7979 -5.9713 2.0489 30 1 5.1453 -6.7608 0.4508 31 1 4.0060 -7.9027 1.2032 32 1 6.0311 -8.8197 2.5143 33 1 7.0605 -7.5815 1.7486 34 1 7.8705 -8.4665 4.0280 35 1 7.7411 -6.6975 3.8787 36 1 6.5894 -7.7798 6.0542 37 1 4.3046 -7.3671 5.7724 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379966353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:23 Heat of formation + Delta-G solvation = -103.431213 kcal Electronic energy + Delta-G solvation = -16925.616141 eV Core-core repulsion = 14088.191107 eV Total energy + Delta-G solvation = -2837.425034 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06093 -38.80237 -36.87885 -34.91305 -34.82226 -33.04895 -30.45577 -28.89789 -27.03379 -24.64869 -24.42698 -23.20689 -22.78844 -19.84357 -18.64017 -17.86857 -17.57069 -17.02776 -16.87446 -16.54496 -16.20867 -15.37686 -15.34756 -15.04601 -14.77036 -14.34417 -13.92441 -13.81791 -13.53553 -13.29844 -13.02882 -12.89339 -12.69414 -12.56999 -12.27846 -11.89898 -11.75924 -11.62221 -11.27841 -11.22473 -10.84995 -10.18458 -9.31742 -9.29745 -8.30966 -6.43068 1.40263 1.40411 1.43581 1.55865 2.36273 2.52056 3.02609 3.09323 3.25648 3.76915 3.90211 4.04179 4.13458 4.23094 4.27840 4.35532 4.48500 4.57247 4.61541 4.69546 4.70405 4.79317 4.83743 4.87198 4.99317 4.99643 5.19658 5.20478 5.41334 5.56583 5.65555 5.98244 6.07707 6.41593 6.58446 6.69610 6.87188 7.29238 8.81590 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.004059 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.566433 B = 6896.930279 C = 7399.469032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.208 3.792 10 O -0.397 6.397 11 C 0.054 3.946 12 C 0.075 3.925 13 N -0.700 5.700 14 C 0.073 3.927 15 C 0.088 3.912 16 H 0.062 0.938 17 C -0.147 4.147 18 C -0.086 4.086 19 C -0.288 4.288 20 C 0.037 3.963 21 O -0.341 6.341 22 H 0.271 0.729 23 H -0.015 1.015 24 H -0.018 1.018 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.343 0.657 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -17.855 6.357 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.317 6.317 11 C -0.024 4.024 12 C -0.054 4.054 13 N -0.332 5.332 14 C -0.056 4.056 15 C 0.032 3.968 16 H 0.080 0.920 17 C -0.185 4.185 18 C -0.123 4.123 19 C -0.307 4.307 20 C -0.026 4.026 21 O -0.256 6.256 22 H 0.079 0.921 23 H 0.003 0.997 24 H 0.000 1.000 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.986 -17.239 6.060 21.854 hybrid contribution -0.708 0.072 0.308 0.776 sum 11.279 -17.167 6.369 21.505 Atomic orbital electron populations 1.70074 1.07770 1.28624 1.50665 1.25975 0.95974 1.03403 0.93899 0.85171 0.78321 0.76942 0.78895 1.19122 1.19826 1.19003 1.21397 0.94057 0.90955 1.52078 0.92190 1.19806 0.88701 0.85034 0.93199 1.87903 1.34751 1.13938 1.95074 1.22609 0.95641 0.84628 0.99486 1.21899 0.94855 0.95587 0.93037 1.60321 1.17342 1.50946 1.04572 1.22028 0.94556 0.93371 0.95641 1.22609 0.90613 0.98236 0.85388 0.91961 1.22213 0.97060 0.99567 0.99670 1.20417 0.97143 1.02896 0.91794 1.22778 0.95044 1.11454 1.01444 1.22392 0.95566 0.97310 0.87291 1.85870 1.38187 1.84099 1.17399 0.92051 0.99735 1.00002 0.93141 0.94545 0.90390 0.91375 0.83843 0.88333 0.93530 0.90479 0.88550 0.89074 0.91164 0.84852 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.98 45.49 29.54 68.60 2.03 47.51 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.55 -33.85 9.43 25.60 0.24 -33.61 16 8 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.18 5.69 71.24 0.41 12.58 16 10 O -0.40 -20.36 10.27 -148.98 -1.53 -21.89 16 11 C 0.05 2.06 6.22 71.98 0.45 2.51 16 12 C 0.08 2.22 6.07 86.31 0.52 2.74 16 13 N -0.70 -21.31 6.45 -513.88 -3.31 -24.62 16 14 C 0.07 1.68 5.41 86.30 0.47 2.15 16 15 C 0.09 2.02 3.08 30.76 0.09 2.11 16 16 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 17 C -0.15 -2.49 5.54 30.85 0.17 -2.32 16 18 C -0.09 -1.39 6.23 29.85 0.19 -1.20 16 19 C -0.29 -5.18 9.97 25.89 0.26 -4.92 16 20 C 0.04 0.75 10.88 68.10 0.74 1.50 16 21 O -0.34 -8.55 9.63 -84.13 -0.81 -9.36 16 22 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 23 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 24 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.34 10.68 8.34 -89.69 -0.75 9.93 16 30 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -70.38 310.90 0.93 -69.45 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.28 Total: 13.61 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 4.00 Total: -17.67 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -3.03 Total: -81.65 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -2.34 Total: -31.25 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.38 0.93 -69.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379966353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.981 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds