Wall clock time and date at job start Mon Mar 30 2020 03:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.43779 * 2 1 4 4 C 1.54631 * 110.48391 * 122.54208 * 2 1 3 5 5 C 1.54480 * 101.76472 * 143.47469 * 4 2 1 6 6 N 1.46768 * 105.55098 * 334.54015 * 5 4 2 7 7 C 1.46498 * 124.34879 * 197.08340 * 6 5 4 8 8 C 1.53001 * 109.47601 * 89.99607 * 7 6 5 9 9 O 1.42901 * 109.47108 * 64.99876 * 8 7 6 10 10 C 1.42898 * 113.99820 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46962 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99885 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00232 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99966 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47468 * 90.00129 * 15 13 11 17 17 H 1.48499 * 109.47219 * 210.00256 * 15 13 11 18 18 H 1.48501 * 109.47060 * 329.99813 * 15 13 11 19 19 C 1.34621 * 111.17925 * 17.05474 * 6 5 4 20 20 O 1.21286 * 124.90539 * 179.58130 * 19 6 5 21 21 H 1.09001 * 109.47379 * 297.46528 * 1 2 3 22 22 H 1.09004 * 109.46975 * 57.46001 * 1 2 3 23 23 H 1.09001 * 109.47856 * 177.45654 * 1 2 3 24 24 H 1.08997 * 109.47166 * 182.54393 * 3 2 1 25 25 H 1.09005 * 109.46761 * 302.53699 * 3 2 1 26 26 H 1.08992 * 109.47370 * 62.54023 * 3 2 1 27 27 H 1.08995 * 110.97041 * 25.35426 * 4 2 1 28 28 H 1.08996 * 111.00066 * 261.60500 * 4 2 1 29 29 H 1.09002 * 110.24648 * 93.58391 * 5 4 2 30 30 H 1.09002 * 110.24453 * 215.49747 * 5 4 2 31 31 H 1.09002 * 109.46674 * 209.99895 * 7 6 5 32 32 H 1.08998 * 109.46665 * 329.99059 * 7 6 5 33 33 H 1.08998 * 109.46849 * 184.99645 * 8 7 6 34 34 H 1.08996 * 109.46833 * 304.99812 * 8 7 6 35 35 H 1.08993 * 109.46907 * 299.99961 * 10 9 8 36 36 H 1.08997 * 109.46842 * 60.00377 * 10 9 8 37 37 H 0.97004 * 120.00288 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4336 0.0000 4 6 2.0711 -0.7792 1.2211 5 6 3.3198 -1.4679 0.6271 6 7 3.0575 -1.5847 -0.8122 7 6 3.7874 -2.4776 -1.7156 8 6 3.0830 -3.8346 -1.7707 9 8 1.7900 -3.6767 -2.3583 10 6 1.0440 -4.8916 -2.4568 11 6 -0.2954 -4.6088 -3.0868 12 1 -0.5513 -3.6021 -3.3829 13 6 -1.1939 -5.6355 -3.2863 14 7 -0.8822 -6.8613 -2.9263 15 14 -2.8539 -5.2851 -4.0679 16 1 -2.7464 -5.4253 -5.5423 17 1 -3.8579 -6.2496 -3.5510 18 1 -3.2774 -3.9021 -3.7317 19 6 2.0594 -0.7653 -1.1927 20 8 1.6448 -0.6570 -2.3274 21 1 -0.3634 0.4740 0.9118 22 1 -0.3633 0.5528 -0.8664 23 1 -0.3635 -1.0266 -0.0456 24 1 3.1531 1.4156 -0.0456 25 1 1.6731 1.9671 -0.8664 26 1 1.7471 1.9396 0.9118 27 1 1.3460 -1.5163 1.5660 28 1 2.3470 -0.0995 2.0273 29 1 4.2059 -0.8573 0.8008 30 1 3.4510 -2.4562 1.0680 31 1 3.8142 -2.0413 -2.7142 32 1 4.8055 -2.6111 -1.3501 33 1 3.6733 -4.5262 -2.3718 34 1 2.9772 -4.2302 -0.7605 35 1 1.5919 -5.6054 -3.0718 36 1 0.8958 -5.3086 -1.4607 37 1 -1.5144 -7.5835 -3.0663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385164661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:40 Heat of formation + Delta-G solvation = -90.975520 kcal Electronic energy + Delta-G solvation = -18089.405849 eV Core-core repulsion = 15252.520934 eV Total energy + Delta-G solvation = -2836.884915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42712 -36.77409 -36.06139 -34.51415 -32.62852 -30.38247 -28.18534 -27.30168 -26.77392 -24.42912 -22.77503 -22.19496 -20.52044 -18.60535 -16.47087 -16.40442 -15.92168 -15.47886 -14.88286 -14.51955 -14.31803 -14.02297 -13.61400 -13.49969 -13.18754 -12.87729 -12.24641 -12.15154 -12.00269 -11.98947 -11.82529 -11.46204 -11.18149 -10.82791 -10.78658 -10.73615 -10.67418 -10.60034 -10.01677 -9.16433 -9.02116 -8.75793 -8.33186 -8.10382 -6.04851 -4.05143 3.05915 3.32370 3.35267 3.39597 3.47052 4.35066 4.42205 4.52446 4.78779 4.88037 5.04415 5.22040 5.30437 5.31621 5.47829 5.56658 5.60713 5.63451 5.68574 5.81068 5.89349 5.92868 5.96320 6.02346 6.05812 6.19983 6.27146 6.43146 6.90160 7.13796 7.47271 7.51083 7.88516 8.22742 8.65544 8.68214 9.10426 9.59540 11.06897 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.006611 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.045711 B = 4234.360297 C = 4806.186963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 C -0.127 4.127 4 C -0.125 4.125 5 C 0.104 3.896 6 N -0.619 5.619 7 C 0.132 3.868 8 C 0.043 3.957 9 O -0.380 6.380 10 C 0.196 3.804 11 C -0.508 4.508 12 H 0.067 0.933 13 C 0.055 3.945 14 N -0.902 5.902 15 Si 0.906 3.094 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.271 1.271 19 C 0.529 3.471 20 O -0.503 6.503 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.003 0.997 36 H 0.001 0.999 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 12.507 10.590 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C -0.185 4.185 4 C -0.163 4.163 5 C -0.019 4.019 6 N -0.354 5.354 7 C 0.010 3.990 8 C -0.036 4.036 9 O -0.299 6.299 10 C 0.121 3.879 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.542 5.542 15 Si 0.734 3.266 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.196 1.196 19 C 0.315 3.685 20 O -0.376 6.376 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.126 12.510 9.842 18.348 hybrid contribution -0.665 -0.545 -0.191 0.881 sum 8.460 11.965 9.652 17.547 Atomic orbital electron populations 1.21676 0.91758 1.03309 1.02043 1.21365 0.98030 0.96217 0.94586 1.21663 1.00739 0.93475 1.02599 1.22746 0.97195 0.99563 0.96805 1.21978 0.97774 1.01051 0.81095 1.48147 1.36896 1.41724 1.08614 1.21420 0.93518 0.89535 0.94525 1.22683 0.88316 0.95642 0.96991 1.88014 1.25539 1.35041 1.81336 1.20169 0.90727 0.81624 0.95347 1.21087 0.98792 0.95338 1.39429 0.91469 1.24936 0.99005 0.94721 0.95883 1.69966 1.36362 0.99812 1.48023 0.86354 0.82665 0.78222 0.79407 1.20449 1.21131 1.19575 1.20589 0.79043 0.79436 0.89444 1.90735 1.59400 1.65664 1.21821 0.92100 0.91665 0.91615 0.92547 0.91814 0.91636 0.89769 0.89538 0.91676 0.90767 0.89561 0.89920 0.93684 0.94633 0.97938 0.98119 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.41 37.16 0.31 -1.50 16 2 C -0.10 -1.31 0.91 -154.52 -0.14 -1.45 16 3 C -0.13 -1.34 8.52 37.15 0.32 -1.02 16 4 C -0.13 -1.31 6.23 -25.10 -0.16 -1.46 16 5 C 0.10 1.14 7.34 -3.12 -0.02 1.12 16 6 N -0.62 -9.65 2.90 -172.35 -0.50 -10.15 16 7 C 0.13 2.05 6.34 -4.04 -0.03 2.03 16 8 C 0.04 0.82 6.28 37.16 0.23 1.05 16 9 O -0.38 -9.84 9.91 -35.23 -0.35 -10.19 16 10 C 0.20 5.66 5.69 36.01 0.20 5.86 16 11 C -0.51 -15.86 9.43 -34.44 -0.32 -16.18 16 12 H 0.07 2.15 7.81 -52.48 -0.41 1.74 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.86 13.29 55.43 0.74 -27.12 16 15 Si 0.91 22.91 29.54 -169.99 -5.02 17.89 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.53 9.59 6.50 -10.77 -0.07 9.52 16 20 O -0.50 -11.66 17.36 5.55 0.10 -11.56 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 28 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.48 7.93 -51.93 -0.41 1.06 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -36.40 311.15 -6.39 -42.79 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -6.27 Total: -5.87 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 0.23 Total: -0.47 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.24 Total: -37.27 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.25 Total: -21.76 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.40 -6.39 -42.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385164661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.182 kcal (2) G-P(sol) polarization free energy of solvation -36.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds