Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 110.43779 * 2 1 4 4 C 1.54631 * 110.48391 * 122.54208 * 2 1 3 5 5 C 1.54480 * 101.76472 * 143.47469 * 4 2 1 6 6 N 1.46768 * 105.55098 * 334.54015 * 5 4 2 7 7 C 1.46498 * 124.34879 * 197.08340 * 6 5 4 8 8 C 1.53001 * 109.47601 * 89.99607 * 7 6 5 9 9 O 1.42901 * 109.47108 * 64.99876 * 8 7 6 10 10 C 1.42898 * 113.99820 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46962 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99885 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99926 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00232 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99966 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47468 * 90.00129 * 15 13 11 17 17 H 1.48499 * 109.47219 * 210.00256 * 15 13 11 18 18 H 1.48501 * 109.47060 * 329.99813 * 15 13 11 19 19 C 1.34621 * 111.17925 * 17.05474 * 6 5 4 20 20 O 1.21286 * 124.90539 * 179.58130 * 19 6 5 21 21 H 1.09001 * 109.47379 * 297.46528 * 1 2 3 22 22 H 1.09004 * 109.46975 * 57.46001 * 1 2 3 23 23 H 1.09001 * 109.47856 * 177.45654 * 1 2 3 24 24 H 1.08997 * 109.47166 * 182.54393 * 3 2 1 25 25 H 1.09005 * 109.46761 * 302.53699 * 3 2 1 26 26 H 1.08992 * 109.47370 * 62.54023 * 3 2 1 27 27 H 1.08995 * 110.97041 * 25.35426 * 4 2 1 28 28 H 1.08996 * 111.00066 * 261.60500 * 4 2 1 29 29 H 1.09002 * 110.24648 * 93.58391 * 5 4 2 30 30 H 1.09002 * 110.24453 * 215.49747 * 5 4 2 31 31 H 1.09002 * 109.46674 * 209.99895 * 7 6 5 32 32 H 1.08998 * 109.46665 * 329.99059 * 7 6 5 33 33 H 1.08998 * 109.46849 * 184.99645 * 8 7 6 34 34 H 1.08996 * 109.46833 * 304.99812 * 8 7 6 35 35 H 1.08993 * 109.46907 * 299.99961 * 10 9 8 36 36 H 1.08997 * 109.46842 * 60.00377 * 10 9 8 37 37 H 0.97004 * 120.00288 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4336 0.0000 4 6 2.0711 -0.7792 1.2211 5 6 3.3198 -1.4679 0.6271 6 7 3.0575 -1.5847 -0.8122 7 6 3.7874 -2.4776 -1.7156 8 6 3.0830 -3.8346 -1.7707 9 8 1.7900 -3.6767 -2.3583 10 6 1.0440 -4.8916 -2.4568 11 6 -0.2954 -4.6088 -3.0868 12 1 -0.5513 -3.6021 -3.3829 13 6 -1.1939 -5.6355 -3.2863 14 7 -0.8822 -6.8613 -2.9263 15 14 -2.8539 -5.2851 -4.0679 16 1 -2.7464 -5.4253 -5.5423 17 1 -3.8579 -6.2496 -3.5510 18 1 -3.2774 -3.9021 -3.7317 19 6 2.0594 -0.7653 -1.1927 20 8 1.6448 -0.6570 -2.3274 21 1 -0.3634 0.4740 0.9118 22 1 -0.3633 0.5528 -0.8664 23 1 -0.3635 -1.0266 -0.0456 24 1 3.1531 1.4156 -0.0456 25 1 1.6731 1.9671 -0.8664 26 1 1.7471 1.9396 0.9118 27 1 1.3460 -1.5163 1.5660 28 1 2.3470 -0.0995 2.0273 29 1 4.2059 -0.8573 0.8008 30 1 3.4510 -2.4562 1.0680 31 1 3.8142 -2.0413 -2.7142 32 1 4.8055 -2.6111 -1.3501 33 1 3.6733 -4.5262 -2.3718 34 1 2.9772 -4.2302 -0.7605 35 1 1.5919 -5.6054 -3.0718 36 1 0.8958 -5.3086 -1.4607 37 1 -1.5144 -7.5835 -3.0663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385164661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = -117.041741 kcal Electronic energy + Delta-G solvation = -18090.536165 eV Core-core repulsion = 15252.520934 eV Total energy + Delta-G solvation = -2838.015231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61350 -38.65737 -37.42448 -35.83353 -34.87767 -31.71011 -29.65632 -28.72475 -28.25220 -25.61444 -24.56333 -23.94560 -21.67354 -19.82284 -18.70868 -17.78084 -17.50968 -16.97894 -16.38578 -16.25635 -16.09345 -15.21588 -15.11764 -14.81595 -14.42640 -14.20998 -13.71904 -13.66668 -13.26657 -13.12527 -12.98392 -12.92276 -12.81778 -12.64451 -12.50079 -12.34999 -12.07439 -11.75502 -11.63446 -11.33791 -10.93342 -10.49669 -10.26162 -9.58718 -8.38279 -6.50238 1.32482 1.35842 1.48372 1.72498 2.17304 2.30322 2.94375 3.17115 3.37643 3.57720 3.91055 4.12701 4.15953 4.16637 4.25719 4.43711 4.50752 4.54888 4.71844 4.73986 4.75231 4.83318 4.85922 4.89016 4.93664 5.10584 5.15107 5.15467 5.23098 5.38329 5.48530 5.74224 5.91374 6.28030 6.49637 6.79668 7.22010 7.35543 8.73981 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.006611 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.045711 B = 4234.360297 C = 4806.186963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.117 4.117 5 C 0.097 3.903 6 N -0.623 5.623 7 C 0.135 3.865 8 C 0.030 3.970 9 O -0.404 6.404 10 C 0.213 3.787 11 C -0.549 4.549 12 H 0.046 0.954 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.979 3.021 16 H -0.266 1.266 17 H -0.265 1.265 18 H -0.272 1.272 19 C 0.506 3.494 20 O -0.574 6.574 21 H 0.099 0.901 22 H 0.043 0.957 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.057 0.943 34 H 0.046 0.954 35 H -0.014 1.014 36 H -0.016 1.016 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.095 13.371 12.641 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.101 4.101 3 C -0.178 4.178 4 C -0.154 4.154 5 C -0.024 4.024 6 N -0.356 5.356 7 C 0.013 3.987 8 C -0.048 4.048 9 O -0.324 6.324 10 C 0.138 3.862 11 C -0.587 4.587 12 H 0.065 0.935 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.801 3.199 16 H -0.191 1.191 17 H -0.189 1.189 18 H -0.197 1.197 19 C 0.294 3.706 20 O -0.453 6.453 21 H 0.118 0.882 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.004 0.996 36 H 0.002 0.998 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.814 13.358 11.951 20.434 hybrid contribution -0.768 -0.853 -0.785 1.391 sum 9.046 12.505 11.166 19.049 Atomic orbital electron populations 1.21678 0.92845 1.01073 1.03058 1.21471 0.97193 0.97839 0.93644 1.21661 1.01344 0.91259 1.03501 1.22824 0.96480 0.99646 0.96450 1.22387 0.99445 1.02682 0.77922 1.48427 1.35940 1.40413 1.10809 1.21485 0.95618 0.87209 0.94385 1.23117 0.85754 0.98687 0.97192 1.87989 1.28494 1.33641 1.82245 1.19755 0.90456 0.82323 0.93674 1.21305 1.00780 0.94953 1.41619 0.93533 1.25894 1.03047 0.94194 0.95644 1.70045 1.38043 1.00661 1.47824 0.85258 0.77421 0.78319 0.78876 1.19089 1.18905 1.19656 1.21663 0.79096 0.79916 0.89885 1.90679 1.61629 1.68080 1.24875 0.88182 0.93752 0.95137 0.91300 0.93738 0.88152 0.90873 0.85024 0.87780 0.89637 0.91874 0.84268 0.92508 0.93577 0.99648 0.99801 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.41 71.98 0.61 -3.02 16 2 C -0.10 -2.50 0.91 -52.19 -0.05 -2.54 16 3 C -0.12 -2.22 8.52 71.98 0.61 -1.61 16 4 C -0.12 -2.04 6.23 31.65 0.20 -1.85 16 5 C 0.10 1.78 7.34 86.83 0.64 2.42 16 6 N -0.62 -18.79 2.90 -817.66 -2.37 -21.16 16 7 C 0.14 4.10 6.34 86.38 0.55 4.65 16 8 C 0.03 1.18 6.28 71.98 0.45 1.63 16 9 O -0.40 -21.96 9.91 -148.98 -1.48 -23.43 16 10 C 0.21 12.91 5.69 71.24 0.41 13.32 16 11 C -0.55 -35.72 9.43 25.60 0.24 -35.48 16 12 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 13 C 0.01 0.67 5.46 84.65 0.46 1.13 16 14 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 15 Si 0.98 47.41 29.54 68.60 2.03 49.44 16 16 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 19 C 0.51 18.76 6.50 87.87 0.57 19.33 16 20 O -0.57 -28.44 17.36 -3.05 -0.05 -28.49 16 21 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 28 H 0.13 1.17 7.90 -2.39 -0.02 1.16 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 32 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -85.18 311.15 4.11 -81.07 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 1.02 Total: 2.06 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.69 Total: -2.01 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -2.09 Total: -78.63 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.53 Total: -51.93 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -85.18 4.11 -81.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385164661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -85.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds