Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46852 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.48530 * 110.99792 * 52.60008 * 13 12 11 15 15 C 1.54946 * 103.22410 * 159.72312 * 14 13 12 16 16 C 1.54595 * 102.92063 * 322.58705 * 15 14 13 17 17 H 1.08995 * 110.30883 * 263.04384 * 16 15 14 18 18 C 1.50696 * 110.39270 * 140.91432 * 16 15 14 19 19 O 1.20828 * 120.00657 * 244.23673 * 18 16 15 20 20 O 1.34235 * 119.99699 * 64.23746 * 18 16 15 21 21 C 1.47898 * 111.00284 * 170.00124 * 13 12 11 22 22 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 24 24 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 25 25 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 26 26 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 27 27 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 28 28 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 29 29 H 1.08998 * 109.47443 * 300.00617 * 12 11 10 30 30 H 1.09003 * 109.47343 * 59.99920 * 12 11 10 31 31 H 1.08997 * 110.67125 * 278.15635 * 14 13 12 32 32 H 1.09000 * 110.66460 * 41.29201 * 14 13 12 33 33 H 1.09006 * 110.72008 * 204.23139 * 15 14 13 34 34 H 1.09001 * 110.87738 * 81.01839 * 15 14 13 35 35 H 0.96702 * 116.99764 * 180.02562 * 20 18 16 36 36 H 1.08998 * 109.91531 * 333.51140 * 21 13 12 37 37 H 1.09000 * 109.91687 * 94.80182 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0005 14 6 0.7443 -7.4618 -1.1017 15 6 0.4726 -8.9769 -1.2796 16 6 1.8659 -9.6069 -1.0522 17 1 2.3574 -9.7929 -2.0071 18 6 1.7411 -10.8893 -0.2706 19 8 2.2290 -10.9752 0.8314 20 8 1.0877 -11.9363 -0.7987 21 6 2.6527 -8.5610 -0.2409 22 1 -0.4850 -0.8401 0.0004 23 1 0.6247 -2.5570 0.8897 24 1 0.6242 -2.5567 -0.8903 25 1 2.8720 -3.6043 -0.8904 26 1 2.8720 -3.6042 0.8895 27 1 0.8540 -5.0445 0.8903 28 1 0.8535 -5.0451 -0.8896 29 1 3.1007 -6.0923 -0.8909 30 1 3.1020 -6.0922 0.8890 31 1 -0.1677 -6.9386 -0.8147 32 1 1.1624 -7.0363 -2.0140 33 1 0.1132 -9.1886 -2.2867 34 1 -0.2385 -9.3340 -0.5347 35 1 1.0334 -12.7372 -0.2596 36 1 3.5214 -8.2274 -0.8085 37 1 2.9695 -8.9900 0.7098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385292703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -113.842325 kcal Electronic energy + Delta-G solvation = -16959.468886 eV Core-core repulsion = 14121.592392 eV Total energy + Delta-G solvation = -2837.876494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86809 -38.80359 -36.44074 -35.18169 -33.23517 -31.35685 -29.38186 -27.90375 -24.70120 -23.47180 -22.49087 -20.94591 -20.35573 -19.95133 -18.46235 -17.32168 -16.68497 -16.29173 -15.56990 -15.19508 -14.76278 -14.01862 -13.72210 -13.44210 -13.29300 -12.97615 -12.56930 -12.24013 -11.98669 -11.91105 -11.73721 -11.59760 -11.15972 -10.96321 -10.87168 -10.71663 -10.62932 -10.51070 -10.10440 -9.75202 -9.62127 -8.49018 -8.44408 -8.28115 -6.32372 -4.00803 1.89024 2.66866 3.45633 3.49988 3.63287 3.89230 4.10057 4.33749 4.57533 4.69034 4.98717 5.05213 5.11602 5.29183 5.32605 5.44345 5.45992 5.53343 5.74449 5.79966 5.80447 5.81920 6.02448 6.16445 6.18001 6.37021 6.68361 6.81109 6.82208 6.94004 7.09674 7.47025 7.56759 7.60412 8.27816 8.51903 8.93610 9.71731 11.08533 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.074109 B = 0.003334 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.729714 B = 8395.459799 C = 8587.645372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 1.074 2.926 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.601 4.601 8 H 0.048 0.952 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.118 4.118 12 C 0.048 3.952 13 N -0.516 5.516 14 C 0.032 3.968 15 C -0.109 4.109 16 C -0.094 4.094 17 H 0.113 0.887 18 C 0.489 3.511 19 O -0.508 6.508 20 O -0.516 6.516 21 C 0.038 3.962 22 H 0.269 0.731 23 H 0.007 0.993 24 H 0.005 0.995 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.410 0.590 36 H 0.055 0.945 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -22.293 -4.070 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.191 4.191 3 Si 0.903 3.097 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.640 4.640 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.080 4.080 13 N -0.240 5.240 14 C -0.096 4.096 15 C -0.147 4.147 16 C -0.114 4.114 17 H 0.131 0.869 18 C 0.330 3.670 19 O -0.396 6.396 20 O -0.328 6.328 21 C -0.090 4.090 22 H 0.079 0.921 23 H 0.025 0.975 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.268 0.732 36 H 0.074 0.926 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.420 -20.349 -3.486 20.787 hybrid contribution 0.635 -2.166 -0.444 2.300 sum 3.055 -22.515 -3.929 23.058 Atomic orbital electron populations 1.70718 1.06893 1.30633 1.47032 1.25861 0.96597 1.02764 0.93886 0.83482 0.74444 0.74877 0.76934 1.21565 1.21342 1.21385 1.22148 0.94330 0.92163 1.55320 0.93340 1.19222 0.94662 0.93198 0.95833 1.21467 0.98821 0.93369 1.00383 1.21743 0.97964 0.93903 1.02006 1.22432 0.96297 0.88396 1.00873 1.64906 1.13561 1.02739 1.42783 1.23308 0.97648 0.95133 0.93463 1.22491 0.94037 0.95215 1.02980 1.21891 1.00203 0.89723 0.99563 0.86900 1.23248 0.73701 0.84944 0.85059 1.90720 1.45149 1.82695 1.20994 1.84538 1.71034 1.25064 1.52165 1.23011 0.94291 0.90659 1.01000 0.92058 0.97515 0.97674 0.93486 0.93186 0.91644 0.92510 0.94708 0.90529 0.89005 0.92983 0.89642 0.90203 0.73170 0.92643 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.69 13.65 55.43 0.76 -27.93 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.90 29.90 -169.99 -5.08 20.81 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.60 -17.62 9.11 -34.44 -0.31 -17.93 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 10 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16 11 C -0.12 -2.02 4.87 -26.73 -0.13 -2.15 16 12 C 0.05 0.68 5.03 -3.82 -0.02 0.67 16 13 N -0.52 -6.78 5.40 -230.46 -1.24 -8.02 16 14 C 0.03 0.36 5.10 -1.89 -0.01 0.35 16 15 C -0.11 -0.97 6.60 -24.87 -0.16 -1.14 16 16 C -0.09 -0.85 3.49 -90.42 -0.32 -1.17 16 17 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 18 C 0.49 4.83 7.50 36.00 0.27 5.10 16 19 O -0.51 -6.70 16.00 -18.75 -0.30 -7.00 16 20 O -0.52 -3.68 13.42 -39.27 -0.53 -4.21 16 21 C 0.04 0.43 6.30 -2.76 -0.02 0.41 16 22 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 23 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 24 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.94 6.79 -51.93 -0.35 0.59 16 29 H 0.03 0.48 7.81 -51.93 -0.41 0.07 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.08 7.66 -51.93 -0.40 0.68 16 32 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.75 7.86 -51.93 -0.41 0.34 16 35 H 0.41 1.26 9.10 45.56 0.41 1.67 16 36 H 0.06 0.57 7.57 -51.93 -0.39 0.17 16 37 H 0.10 1.31 6.42 -51.93 -0.33 0.98 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -34.09 303.63 -8.03 -42.13 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.16 Total: -2.57 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.05 Total: -17.79 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.49 Total: -35.96 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.83 Total: -11.20 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.09 -8.03 -42.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385292703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.716 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds