Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46852 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47327 * 180.02562 * 12 11 10 14 14 C 1.48530 * 110.99792 * 52.60008 * 13 12 11 15 15 C 1.54946 * 103.22410 * 159.72312 * 14 13 12 16 16 C 1.54595 * 102.92063 * 322.58705 * 15 14 13 17 17 H 1.08995 * 110.30883 * 263.04384 * 16 15 14 18 18 C 1.50696 * 110.39270 * 140.91432 * 16 15 14 19 19 O 1.20828 * 120.00657 * 244.23673 * 18 16 15 20 20 O 1.34235 * 119.99699 * 64.23746 * 18 16 15 21 21 C 1.47898 * 111.00284 * 170.00124 * 13 12 11 22 22 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 24 24 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 25 25 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 26 26 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 27 27 H 1.08999 * 109.47147 * 299.99896 * 11 10 9 28 28 H 1.08998 * 109.47134 * 60.00300 * 11 10 9 29 29 H 1.08998 * 109.47443 * 300.00617 * 12 11 10 30 30 H 1.09003 * 109.47343 * 59.99920 * 12 11 10 31 31 H 1.08997 * 110.67125 * 278.15635 * 14 13 12 32 32 H 1.09000 * 110.66460 * 41.29201 * 14 13 12 33 33 H 1.09006 * 110.72008 * 204.23139 * 15 14 13 34 34 H 1.09001 * 110.87738 * 81.01839 * 15 14 13 35 35 H 0.96702 * 116.99764 * 180.02562 * 20 18 16 36 36 H 1.08998 * 109.91531 * 333.51140 * 21 13 12 37 37 H 1.09000 * 109.91687 * 94.80182 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4746 -6.1500 -0.0005 13 7 1.7402 -7.4222 -0.0005 14 6 0.7443 -7.4618 -1.1017 15 6 0.4726 -8.9769 -1.2796 16 6 1.8659 -9.6069 -1.0522 17 1 2.3574 -9.7929 -2.0071 18 6 1.7411 -10.8893 -0.2706 19 8 2.2290 -10.9752 0.8314 20 8 1.0877 -11.9363 -0.7987 21 6 2.6527 -8.5610 -0.2409 22 1 -0.4850 -0.8401 0.0004 23 1 0.6247 -2.5570 0.8897 24 1 0.6242 -2.5567 -0.8903 25 1 2.8720 -3.6043 -0.8904 26 1 2.8720 -3.6042 0.8895 27 1 0.8540 -5.0445 0.8903 28 1 0.8535 -5.0451 -0.8896 29 1 3.1007 -6.0923 -0.8909 30 1 3.1020 -6.0922 0.8890 31 1 -0.1677 -6.9386 -0.8147 32 1 1.1624 -7.0363 -2.0140 33 1 0.1132 -9.1886 -2.2867 34 1 -0.2385 -9.3340 -0.5347 35 1 1.0334 -12.7372 -0.2596 36 1 3.5214 -8.2274 -0.8085 37 1 2.9695 -8.9900 0.7098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385292703.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -137.975113 kcal Electronic energy + Delta-G solvation = -16960.515362 eV Core-core repulsion = 14121.592392 eV Total energy + Delta-G solvation = -2838.922970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.63764 -39.71056 -37.18343 -36.83233 -34.96703 -32.83232 -30.20804 -29.51998 -26.33879 -24.61868 -23.79293 -22.46859 -21.37236 -21.02990 -19.18171 -18.87037 -18.07491 -17.17339 -16.66953 -16.28484 -15.77565 -15.66278 -15.14773 -15.02623 -14.49624 -14.24191 -13.77993 -13.54101 -13.46322 -12.74412 -12.67168 -12.59216 -12.51520 -12.39074 -12.32280 -12.07824 -11.92922 -11.85038 -11.54499 -11.51264 -11.41222 -10.62887 -10.55263 -9.42919 -8.70092 -6.40338 1.15298 1.51691 1.61776 1.78323 2.04068 2.56056 2.94208 3.15024 3.30676 3.56962 3.96329 4.00090 4.10223 4.24923 4.33737 4.40745 4.43811 4.47756 4.62819 4.70250 4.75441 4.86134 4.91193 4.97677 5.02751 5.05923 5.12059 5.18564 5.46638 5.55672 5.58007 5.87304 5.98266 6.01281 6.18921 6.57787 6.95876 7.42256 8.70883 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.074109 B = 0.003334 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.729714 B = 8395.459799 C = 8587.645372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.124 2.876 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.621 4.621 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.091 4.091 11 C -0.106 4.106 12 C 0.058 3.942 13 N -0.534 5.534 14 C 0.027 3.973 15 C -0.100 4.100 16 C -0.091 4.091 17 H 0.143 0.857 18 C 0.494 3.506 19 O -0.549 6.549 20 O -0.507 6.507 21 C 0.037 3.963 22 H 0.255 0.745 23 H -0.015 1.015 24 H -0.011 1.011 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.428 0.572 36 H 0.068 0.932 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -23.107 -5.250 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.239 4.239 3 Si 0.945 3.055 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.659 4.659 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.129 4.129 11 C -0.144 4.144 12 C -0.070 4.070 13 N -0.259 5.259 14 C -0.100 4.100 15 C -0.138 4.138 16 C -0.110 4.110 17 H 0.161 0.839 18 C 0.338 3.662 19 O -0.439 6.439 20 O -0.321 6.321 21 C -0.090 4.090 22 H 0.065 0.935 23 H 0.003 0.997 24 H 0.007 0.993 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.290 0.710 36 H 0.086 0.914 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.343 -21.217 -4.676 21.982 hybrid contribution 0.290 -1.989 -0.077 2.011 sum 3.633 -23.206 -4.754 23.965 Atomic orbital electron populations 1.70860 1.07960 1.29884 1.48995 1.27515 0.96665 1.07049 0.92708 0.82858 0.74231 0.70805 0.77625 1.19392 1.20382 1.20217 1.22598 0.94729 0.93628 1.54901 0.93163 1.19194 0.95185 0.94676 0.93929 1.21297 0.97763 0.93324 1.00546 1.21547 0.98052 0.93140 1.01627 1.22219 0.95438 0.88087 1.01274 1.64825 1.14287 1.02532 1.44245 1.23363 0.96707 0.96943 0.93009 1.22460 0.93815 0.93188 1.04339 1.21918 1.00129 0.88747 1.00209 0.83926 1.23359 0.72930 0.85572 0.84336 1.90717 1.47017 1.83468 1.22719 1.84492 1.69969 1.25417 1.52189 1.22964 0.94771 0.90517 1.00771 0.93523 0.99680 0.99277 0.92909 0.93293 0.92889 0.92088 0.93581 0.90900 0.90105 0.92311 0.86946 0.90926 0.71046 0.91359 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.65 21.45 0.29 -59.41 16 2 C -0.04 -2.53 5.46 84.65 0.46 -2.07 16 3 Si 1.12 51.33 29.90 68.60 2.05 53.38 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.62 -36.61 9.11 25.60 0.23 -36.38 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.01 0.39 4.28 29.85 0.13 0.52 16 10 C -0.09 -3.81 5.15 30.60 0.16 -3.65 16 11 C -0.11 -3.59 4.87 30.60 0.15 -3.44 16 12 C 0.06 1.60 5.03 86.30 0.43 2.03 16 13 N -0.53 -13.48 5.40 -883.03 -4.76 -18.24 16 14 C 0.03 0.57 5.10 86.65 0.44 1.01 16 15 C -0.10 -1.54 6.60 31.80 0.21 -1.33 16 16 C -0.09 -1.42 3.49 -10.66 -0.04 -1.45 16 17 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 18 C 0.49 8.87 7.50 71.23 0.53 9.40 16 19 O -0.55 -14.11 16.00 21.96 0.35 -13.76 16 20 O -0.51 -5.94 13.42 -51.47 -0.69 -6.63 16 21 C 0.04 0.79 6.30 86.45 0.54 1.33 16 22 H 0.26 16.44 7.22 -92.71 -0.67 15.77 16 23 H -0.02 -0.87 8.01 -2.38 -0.02 -0.89 16 24 H -0.01 -0.62 8.01 -2.39 -0.02 -0.64 16 25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 2.01 6.79 -2.39 -0.02 1.99 16 29 H 0.05 1.17 7.81 -2.39 -0.02 1.15 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 1.85 7.66 -2.39 -0.02 1.83 16 32 H 0.06 1.16 8.00 -2.39 -0.02 1.14 16 33 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.07 1.23 7.86 -2.39 -0.02 1.21 16 35 H 0.43 1.64 9.10 -74.06 -0.67 0.97 16 36 H 0.07 1.25 7.57 -2.39 -0.02 1.23 16 37 H 0.08 2.10 6.42 -2.39 -0.02 2.09 16 Total: -1.00 -73.88 303.63 0.97 -72.91 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 0.48 Total: 5.78 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 3.26 Total: -34.02 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -4.47 Total: -77.65 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.34 Total: -20.39 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -73.88 0.97 -72.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385292703.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.067 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds