Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47596 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.48563 * 111.00226 * 285.41771 * 13 12 11 15 15 C 1.54373 * 104.59704 * 200.96295 * 14 13 12 16 16 C 1.54260 * 105.06140 * 23.85236 * 15 14 13 17 17 C 1.48562 * 110.99718 * 170.00343 * 13 12 11 18 18 H 1.08993 * 110.41636 * 40.26419 * 17 13 12 19 19 C 1.50702 * 110.40909 * 277.81631 * 17 13 12 20 20 O 1.20825 * 120.00390 * 0.02562 * 19 17 13 21 21 O 1.34236 * 119.99668 * 180.02562 * 19 17 13 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 26 26 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 27 27 H 1.09002 * 109.47128 * 300.00412 * 11 10 9 28 28 H 1.09006 * 109.46661 * 59.99854 * 11 10 9 29 29 H 1.08997 * 109.46852 * 300.00512 * 12 11 10 30 30 H 1.08999 * 109.46628 * 59.99805 * 12 11 10 31 31 H 1.09000 * 110.40938 * 319.74301 * 14 13 12 32 32 H 1.08999 * 110.40667 * 82.18465 * 14 13 12 33 33 H 1.09006 * 110.32464 * 264.96073 * 15 14 13 34 34 H 1.08999 * 110.32448 * 142.75217 * 15 14 13 35 35 H 1.09002 * 110.32409 * 241.10236 * 16 15 14 36 36 H 1.08997 * 110.32319 * 118.89767 * 16 15 14 37 37 H 0.96706 * 116.99630 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4741 -6.1501 -0.0005 13 7 1.7396 -7.4222 -0.0005 14 6 1.1545 -7.6992 1.3367 15 6 0.9112 -9.2236 1.3466 16 6 1.8990 -9.7940 0.3081 17 6 2.6562 -8.5662 -0.2419 18 1 3.5923 -8.4238 0.2978 19 6 2.9179 -8.7277 -1.7172 20 8 2.4020 -7.9742 -2.5084 21 8 3.7242 -9.7087 -2.1523 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 0.8898 24 1 0.6239 -2.5567 -0.8903 25 1 2.8717 -3.6044 -0.8905 26 1 2.8717 -3.6044 0.8894 27 1 0.8536 -5.0446 0.8903 28 1 0.8530 -5.0450 -0.8897 29 1 3.1002 -6.0924 -0.8909 30 1 3.1014 -6.0923 0.8890 31 1 1.8558 -7.4210 2.1234 32 1 0.2132 -7.1632 1.4581 33 1 -0.1152 -9.4451 1.0542 34 1 1.1213 -9.6341 2.3343 35 1 1.3575 -10.2955 -0.4940 36 1 2.5940 -10.4844 0.7861 37 1 3.8622 -9.7724 -3.1074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385307964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = -106.338421 kcal Electronic energy + Delta-G solvation = -17233.731281 eV Core-core repulsion = 14396.180181 eV Total energy + Delta-G solvation = -2837.551100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.62559 -38.61720 -36.11206 -34.99777 -32.90208 -31.20026 -29.93846 -27.88141 -24.76707 -23.69156 -21.94454 -20.96171 -20.36827 -19.85511 -18.09211 -17.06071 -16.27305 -16.12096 -15.31605 -14.91676 -14.81160 -14.40945 -13.97898 -13.37456 -13.13004 -12.69562 -12.42698 -12.21409 -11.90079 -11.59565 -11.55150 -11.42452 -11.26706 -10.94219 -10.89694 -10.47778 -10.44174 -10.42039 -10.29503 -9.56081 -9.21816 -8.96329 -8.58450 -8.28292 -5.93470 -3.95489 2.14570 2.72477 3.35513 3.41435 3.45267 3.93321 4.28163 4.50081 4.51300 4.66718 4.95019 5.10001 5.27996 5.34345 5.39854 5.42042 5.51585 5.56000 5.72947 5.81720 5.91838 5.93622 6.16854 6.24665 6.38408 6.51932 6.73992 6.86185 6.97859 7.06878 7.26583 7.76113 7.84631 7.92850 8.08118 8.50880 9.11989 9.68024 11.17954 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.004087 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.023250 B = 6849.519742 C = 7285.353740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.108 4.108 12 C 0.046 3.954 13 N -0.491 5.491 14 C 0.033 3.967 15 C -0.125 4.125 16 C -0.108 4.108 17 C 0.068 3.932 18 H 0.088 0.912 19 C 0.481 3.519 20 O -0.485 6.485 21 O -0.523 6.523 22 H 0.260 0.740 23 H 0.014 0.986 24 H 0.016 0.984 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 -22.130 1.594 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.146 4.146 12 C -0.081 4.081 13 N -0.217 5.217 14 C -0.094 4.094 15 C -0.163 4.163 16 C -0.146 4.146 17 C -0.042 4.042 18 H 0.105 0.895 19 C 0.321 3.679 20 O -0.370 6.370 21 O -0.335 6.335 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.593 -21.704 1.363 22.227 hybrid contribution 1.217 0.976 -0.094 1.563 sum 5.810 -20.729 1.269 21.565 Atomic orbital electron populations 1.69975 1.06040 1.26463 1.51090 1.25031 0.94838 0.99191 0.95462 0.86612 0.79871 0.83603 0.78023 1.20724 1.19919 1.21234 1.21293 0.92998 0.91236 1.50242 0.92811 1.19084 0.94025 0.91269 0.97192 1.21601 0.99121 0.94024 0.99978 1.21565 0.97687 0.93102 1.02207 1.22470 0.96352 0.88762 1.00537 1.65104 1.28202 1.00493 1.27855 1.23188 1.00982 0.95878 0.89353 1.22338 1.00134 0.94967 0.98831 1.22217 0.98071 0.95244 0.99117 1.22168 0.98135 0.95004 0.88920 0.89454 1.23142 0.75237 0.77363 0.92148 1.90771 1.46791 1.42615 1.56804 1.84504 1.63881 1.52717 1.32388 0.93081 0.96723 0.96539 0.93497 0.93746 0.92604 0.91447 0.90965 0.94542 0.93170 0.88925 0.90496 0.90771 0.90604 0.90022 0.73221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.36 5.15 -26.73 -0.14 -2.50 16 11 C -0.11 -1.98 5.33 -26.73 -0.14 -2.12 16 12 C 0.05 0.71 4.64 -3.83 -0.02 0.69 16 13 N -0.49 -6.71 4.60 -223.51 -1.03 -7.74 16 14 C 0.03 0.37 5.91 -2.18 -0.01 0.36 16 15 C -0.12 -1.04 7.00 -25.35 -0.18 -1.22 16 16 C -0.11 -0.92 6.54 -25.35 -0.17 -1.09 16 17 C 0.07 0.75 2.78 -67.22 -0.19 0.56 16 18 H 0.09 0.86 8.00 -51.93 -0.42 0.44 16 19 C 0.48 5.93 7.26 36.01 0.26 6.19 16 20 O -0.49 -7.99 16.66 -18.75 -0.31 -8.30 16 21 O -0.52 -4.62 13.42 -39.27 -0.53 -5.15 16 22 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 23 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.00 7.47 -51.93 -0.39 0.61 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.18 7.40 -51.93 -0.38 0.79 16 30 H 0.04 0.51 7.77 -51.93 -0.40 0.11 16 31 H 0.05 0.52 7.75 -51.93 -0.40 0.12 16 32 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.41 2.00 9.10 45.56 0.41 2.42 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -34.37 307.37 -7.97 -42.34 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -5.32 Total: -3.23 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.13 Total: -12.72 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.29 Total: -34.75 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.84 Total: -13.45 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.37 -7.97 -42.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385307964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.001 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds