Wall clock time and date at job start Mon Mar 30 2020 03:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47596 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.48563 * 111.00226 * 285.41771 * 13 12 11 15 15 C 1.54373 * 104.59704 * 200.96295 * 14 13 12 16 16 C 1.54260 * 105.06140 * 23.85236 * 15 14 13 17 17 C 1.48562 * 110.99718 * 170.00343 * 13 12 11 18 18 H 1.08993 * 110.41636 * 40.26419 * 17 13 12 19 19 C 1.50702 * 110.40909 * 277.81631 * 17 13 12 20 20 O 1.20825 * 120.00390 * 0.02562 * 19 17 13 21 21 O 1.34236 * 119.99668 * 180.02562 * 19 17 13 22 22 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 24 24 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 25 25 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 26 26 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 27 27 H 1.09002 * 109.47128 * 300.00412 * 11 10 9 28 28 H 1.09006 * 109.46661 * 59.99854 * 11 10 9 29 29 H 1.08997 * 109.46852 * 300.00512 * 12 11 10 30 30 H 1.08999 * 109.46628 * 59.99805 * 12 11 10 31 31 H 1.09000 * 110.40938 * 319.74301 * 14 13 12 32 32 H 1.08999 * 110.40667 * 82.18465 * 14 13 12 33 33 H 1.09006 * 110.32464 * 264.96073 * 15 14 13 34 34 H 1.08999 * 110.32448 * 142.75217 * 15 14 13 35 35 H 1.09002 * 110.32409 * 241.10236 * 16 15 14 36 36 H 1.08997 * 110.32319 * 118.89767 * 16 15 14 37 37 H 0.96706 * 116.99630 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4741 -6.1501 -0.0005 13 7 1.7396 -7.4222 -0.0005 14 6 1.1545 -7.6992 1.3367 15 6 0.9112 -9.2236 1.3466 16 6 1.8990 -9.7940 0.3081 17 6 2.6562 -8.5662 -0.2419 18 1 3.5923 -8.4238 0.2978 19 6 2.9179 -8.7277 -1.7172 20 8 2.4020 -7.9742 -2.5084 21 8 3.7242 -9.7087 -2.1523 22 1 -0.4850 0.8401 0.0004 23 1 0.6246 -2.5570 0.8898 24 1 0.6239 -2.5567 -0.8903 25 1 2.8717 -3.6044 -0.8905 26 1 2.8717 -3.6044 0.8894 27 1 0.8536 -5.0446 0.8903 28 1 0.8530 -5.0450 -0.8897 29 1 3.1002 -6.0924 -0.8909 30 1 3.1014 -6.0923 0.8890 31 1 1.8558 -7.4210 2.1234 32 1 0.2132 -7.1632 1.4581 33 1 -0.1152 -9.4451 1.0542 34 1 1.1213 -9.6341 2.3343 35 1 1.3575 -10.2955 -0.4940 36 1 2.5940 -10.4844 0.7861 37 1 3.8622 -9.7724 -3.1074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385307964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:02 Heat of formation + Delta-G solvation = -130.475672 kcal Electronic energy + Delta-G solvation = -17234.777951 eV Core-core repulsion = 14396.180181 eV Total energy + Delta-G solvation = -2838.597770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.54632 -39.53929 -37.02111 -36.67906 -34.75768 -32.70515 -30.78121 -29.55576 -26.41916 -24.80446 -23.31633 -22.16038 -21.39466 -21.30295 -18.98280 -18.44333 -17.92181 -17.18831 -16.51654 -16.43136 -16.13507 -15.64605 -15.06079 -14.69644 -14.35479 -14.02716 -13.92799 -13.44439 -13.30297 -12.97275 -12.85301 -12.67681 -12.50012 -12.29726 -12.21743 -12.14671 -11.91630 -11.67844 -11.37934 -11.33464 -11.26646 -11.02051 -10.56251 -9.55685 -8.20405 -6.32377 1.22037 1.38768 1.41150 1.52306 1.92892 2.40556 2.97851 3.12150 3.50685 3.70864 3.93868 4.08526 4.18693 4.22408 4.37731 4.49667 4.52604 4.59419 4.69924 4.74919 4.86134 4.92485 5.01915 5.11771 5.16008 5.24608 5.27438 5.32447 5.52683 5.62192 5.74557 5.79672 5.85541 5.94644 6.24509 6.84717 7.03789 7.36957 8.91750 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.004087 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.023250 B = 6849.519742 C = 7285.353740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.097 4.097 12 C 0.059 3.941 13 N -0.518 5.518 14 C 0.028 3.972 15 C -0.117 4.117 16 C -0.101 4.101 17 C 0.063 3.937 18 H 0.108 0.892 19 C 0.486 3.514 20 O -0.538 6.538 21 O -0.509 6.509 22 H 0.264 0.736 23 H -0.008 1.008 24 H -0.015 1.015 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -23.265 2.641 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.069 4.069 13 N -0.243 5.243 14 C -0.099 4.099 15 C -0.155 4.155 16 C -0.139 4.139 17 C -0.047 4.047 18 H 0.125 0.875 19 C 0.328 3.672 20 O -0.426 6.426 21 O -0.322 6.322 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.003 0.997 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 6.358 -22.886 2.410 23.874 hybrid contribution 0.654 1.264 -0.448 1.493 sum 7.012 -21.621 1.962 22.814 Atomic orbital electron populations 1.70116 1.07922 1.27804 1.51678 1.26042 0.95807 1.03542 0.94630 0.85400 0.78572 0.78146 0.78640 1.19431 1.18783 1.20674 1.21730 0.93561 0.92459 1.50618 0.92164 1.19008 0.94476 0.93315 0.94555 1.21400 0.98009 0.93627 1.00373 1.21366 0.97873 0.93065 1.01180 1.22178 0.95271 0.88716 1.00721 1.64967 1.29115 1.00521 1.29701 1.23271 1.00396 0.97872 0.88357 1.22336 1.00110 0.92806 1.00273 1.22263 0.98301 0.94368 0.99009 1.22354 0.98888 0.95021 0.88412 0.87500 1.23467 0.74410 0.76820 0.92499 1.90761 1.49045 1.44677 1.58154 1.84462 1.62516 1.51109 1.34151 0.92741 0.98912 0.99705 0.93725 0.92482 0.92288 0.93825 0.92256 0.92735 0.92108 0.90358 0.90696 0.88117 0.91039 0.87083 0.71165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.03 13.29 21.45 0.28 -58.74 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.33 4.97 29.85 0.15 1.47 16 10 C -0.10 -4.23 5.15 30.59 0.16 -4.07 16 11 C -0.10 -3.65 5.33 30.59 0.16 -3.48 16 12 C 0.06 1.79 4.64 86.30 0.40 2.19 16 13 N -0.52 -13.71 4.60 -861.06 -3.96 -17.67 16 14 C 0.03 0.58 5.91 86.45 0.51 1.09 16 15 C -0.12 -1.65 7.00 31.49 0.22 -1.43 16 16 C -0.10 -1.41 6.54 31.49 0.21 -1.21 16 17 C 0.06 1.27 2.78 44.32 0.12 1.39 16 18 H 0.11 1.76 8.00 -2.39 -0.02 1.74 16 19 C 0.49 11.42 7.26 71.24 0.52 11.94 16 20 O -0.54 -17.89 16.66 21.97 0.37 -17.52 16 21 O -0.51 -7.92 13.42 -51.47 -0.69 -8.61 16 22 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 23 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 24 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 25 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 27 H 0.06 2.15 7.47 -2.39 -0.02 2.13 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 1.93 7.40 -2.39 -0.02 1.92 16 30 H 0.05 1.43 7.77 -2.39 -0.02 1.41 16 31 H 0.06 1.12 7.75 -2.39 -0.02 1.10 16 32 H 0.08 1.80 7.85 -2.39 -0.02 1.78 16 33 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.07 7.85 -2.39 -0.02 1.05 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.43 3.40 9.10 -74.05 -0.67 2.72 16 Total: -1.00 -75.81 307.37 1.54 -74.28 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 0.37 Total: 4.86 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.14 Total: -24.14 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -3.67 Total: -76.41 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.32 Total: -26.14 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.81 1.54 -74.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385307964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.200 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds