Wall clock time and date at job start Mon Mar 30 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 O 1.42902 * 109.46664 * 179.97438 * 9 7 2 11 11 C 1.42904 * 114.00074 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47432 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46794 * 64.99823 * 12 11 10 14 14 C 1.46903 * 111.00031 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47253 * 180.02562 * 14 13 12 16 16 H 1.08995 * 115.51206 * 29.41339 * 15 14 13 17 17 C 1.52999 * 117.43205 * 244.04441 * 15 14 13 18 18 H 1.09009 * 119.80495 * 4.63569 * 17 15 14 19 19 C 1.54541 * 118.03347 * 161.82761 * 17 15 14 20 20 O 1.44421 * 104.76026 * 39.01571 * 19 17 15 21 21 C 1.44428 * 105.27921 * 40.44472 * 20 19 17 22 22 C 1.53008 * 117.43358 * 174.79030 * 15 14 13 23 23 H 1.08999 * 119.80562 * 354.34274 * 22 15 14 24 24 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 26 26 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 27 27 H 1.08999 * 109.47191 * 300.00309 * 11 10 9 28 28 H 1.08999 * 109.46703 * 60.00069 * 11 10 9 29 29 H 1.08997 * 109.47463 * 184.99858 * 12 11 10 30 30 H 1.08997 * 109.47144 * 305.00664 * 12 11 10 31 31 H 1.00893 * 111.00249 * 303.95827 * 13 12 11 32 32 H 1.09007 * 109.47188 * 300.00896 * 14 13 12 33 33 H 1.09004 * 109.46983 * 59.99868 * 14 13 12 34 34 H 1.09001 * 110.44905 * 280.17049 * 19 17 15 35 35 H 1.09000 * 110.42901 * 157.85131 * 19 17 15 36 36 H 1.08993 * 110.37871 * 200.65389 * 21 20 19 37 37 H 1.09005 * 110.46294 * 78.35923 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 8 3.9879 -2.5412 -0.0010 11 6 5.4125 -2.6540 -0.0021 12 6 5.8071 -4.1323 -0.0025 13 7 5.3668 -4.7562 -1.2575 14 6 5.7289 -6.1794 -1.2932 15 6 5.2557 -6.7931 -2.6123 16 1 5.2157 -6.1097 -3.4604 17 6 4.1889 -7.8873 -2.5380 18 1 3.7436 -8.1456 -1.5771 19 6 3.3949 -8.2161 -3.8225 20 8 4.3685 -8.1402 -4.8864 21 6 5.5641 -8.7497 -4.3525 22 6 5.6471 -8.2451 -2.8949 23 1 6.3169 -8.7682 -2.2124 24 1 -0.4849 0.8401 -0.0004 25 1 3.8746 -0.6800 -0.8911 26 1 3.8753 -0.6803 0.8889 27 1 5.8146 -2.1708 -0.8926 28 1 5.8159 -2.1702 0.8874 29 1 6.8900 -4.2193 0.0862 30 1 5.3319 -4.6354 0.8395 31 1 4.3749 -4.6322 -1.3944 32 1 6.8113 -6.2811 -1.2131 33 1 5.2529 -6.6965 -0.4600 34 1 2.6036 -7.4829 -3.9792 35 1 2.9747 -9.2201 -3.7635 36 1 6.4391 -8.4266 -4.9164 37 1 5.4798 -9.8363 -4.3736 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385609530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:29 Heat of formation + Delta-G solvation = -85.548048 kcal Electronic energy + Delta-G solvation = -16839.151337 eV Core-core repulsion = 14002.501775 eV Total energy + Delta-G solvation = -2836.649562 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31975 -38.96956 -37.19366 -35.30158 -34.71690 -31.20626 -29.62786 -29.53128 -27.17716 -24.24739 -24.00017 -22.76761 -21.59999 -20.94438 -19.06056 -17.79124 -17.41134 -16.97862 -16.80376 -16.40893 -16.28695 -16.00991 -15.48270 -15.14854 -14.69281 -14.18079 -13.72847 -13.67143 -13.48813 -13.19718 -13.13049 -12.78048 -12.50371 -12.43039 -12.32977 -11.96828 -11.82928 -11.36700 -11.07717 -10.93225 -10.87944 -10.50320 -10.35457 -9.39921 -8.38110 -6.46058 1.33139 1.36324 1.47377 2.29075 2.47403 2.82391 2.94744 3.08914 3.22559 3.63763 3.74625 3.96261 3.98649 4.16756 4.32536 4.38354 4.40619 4.47582 4.53360 4.60282 4.63947 4.71559 4.74852 4.79527 4.83203 4.85123 4.91973 4.94559 5.02025 5.30399 5.43060 5.78296 5.92168 6.09982 6.33205 6.57775 6.73385 7.18568 8.78988 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030571 B = 0.004024 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.672853 B = 6956.981795 C = 7550.709524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.258 1.258 5 H -0.247 1.247 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.030 0.970 9 C 0.181 3.819 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.072 3.928 13 N -0.698 5.698 14 C 0.097 3.903 15 C -0.116 4.116 16 H 0.090 0.910 17 C -0.206 4.206 18 H 0.129 0.871 19 C 0.067 3.933 20 O -0.402 6.402 21 C 0.065 3.935 22 C -0.177 4.177 23 H 0.145 0.855 24 H 0.273 0.727 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.032 0.968 31 H 0.342 0.658 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.656 -15.909 -3.907 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.170 1.170 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.049 0.951 9 C 0.106 3.894 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.057 4.057 13 N -0.330 5.330 14 C -0.032 4.032 15 C -0.135 4.135 16 H 0.109 0.891 17 C -0.224 4.224 18 H 0.147 0.853 19 C -0.009 4.009 20 O -0.321 6.321 21 C -0.011 4.011 22 C -0.195 4.195 23 H 0.163 0.837 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.050 0.950 31 H 0.159 0.841 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.904 -15.688 -4.471 22.783 hybrid contribution -0.880 0.474 0.860 1.318 sum 15.025 -15.214 -3.611 21.686 Atomic orbital electron populations 1.70031 1.08255 1.28794 1.51068 1.25837 0.95795 1.03414 0.93421 0.85607 0.79413 0.77507 0.79808 1.18262 1.17023 1.19842 1.21171 0.90987 0.93851 1.52385 0.95128 1.20288 0.93207 0.80954 0.94985 1.87809 1.21338 1.28333 1.95270 1.22728 0.81777 0.97705 1.00589 1.21960 1.01297 0.92061 0.90385 1.60515 1.22724 1.14243 1.35484 1.21445 1.01136 0.86888 0.93703 1.22163 1.01031 0.91077 0.99204 0.89130 1.24276 0.92155 1.05474 1.00498 0.85331 1.23037 0.91711 1.02102 0.84098 1.89142 1.23995 1.81587 1.37400 1.23142 0.88200 0.98104 0.91618 1.24152 0.98768 0.97693 0.98936 0.83721 0.91786 0.97232 0.97068 0.93103 0.92090 0.87238 0.94980 0.84056 0.89085 0.94765 0.89462 0.89551 0.88038 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.79 5.47 84.65 0.46 1.26 16 3 Si 0.96 43.68 27.47 68.60 1.88 45.56 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.25 -10.47 6.54 99.48 0.65 -9.81 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -33.55 9.99 25.60 0.26 -33.29 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 9 C 0.18 9.19 4.76 71.23 0.34 9.52 16 10 O -0.41 -18.85 9.85 -148.98 -1.47 -20.32 16 11 C 0.05 1.64 6.28 71.98 0.45 2.10 16 12 C 0.07 1.95 6.11 86.30 0.53 2.48 16 13 N -0.70 -20.00 6.50 -513.88 -3.34 -23.34 16 14 C 0.10 2.13 5.96 86.30 0.51 2.65 16 15 C -0.12 -2.59 5.32 -10.79 -0.06 -2.64 16 16 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 17 C -0.21 -4.11 6.85 -9.82 -0.07 -4.18 16 18 H 0.13 2.37 8.13 -2.38 -0.02 2.35 16 19 C 0.07 1.37 7.54 72.51 0.55 1.92 16 20 O -0.40 -9.59 11.31 -148.98 -1.69 -11.28 16 21 C 0.07 1.09 7.53 72.48 0.55 1.64 16 22 C -0.18 -2.94 6.96 -9.84 -0.07 -3.01 16 23 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 26 H 0.01 0.55 7.57 -2.38 -0.02 0.53 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.34 11.67 8.29 -89.70 -0.74 10.92 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.03 0.73 7.94 -2.39 -0.02 0.71 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -70.79 307.58 -0.62 -71.41 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.24 Total: 18.89 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 3.45 Total: -21.57 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.04 Total: -82.70 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -3.15 Total: -31.59 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -70.79 -0.62 -71.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385609530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.141 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds