Wall clock time and date at job start Mon Mar 30 2020 03:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99788 * 2 1 4 4 H 1.48506 * 109.47118 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47268 * 120.00091 * 3 2 1 6 6 H 1.48493 * 109.47289 * 240.00125 * 3 2 1 7 7 C 1.37874 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99620 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46921 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47487 * 179.97438 * 10 9 7 12 12 C 1.48554 * 111.00139 * 279.97095 * 11 10 9 13 13 C 1.54377 * 104.59651 * 200.95424 * 12 11 10 14 14 C 1.54256 * 105.05924 * 23.85197 * 13 12 11 15 15 C 1.48558 * 111.00528 * 164.54645 * 11 10 9 16 16 H 1.08998 * 110.40621 * 40.26397 * 15 11 10 17 17 C 1.53002 * 110.41411 * 277.94083 * 15 11 10 18 18 C 1.52991 * 109.47064 * 174.57047 * 17 15 11 19 19 C 1.50700 * 109.47275 * 184.91694 * 18 17 15 20 20 O 1.20834 * 119.99837 * 0.02562 * 19 18 17 21 21 O 1.34225 * 120.00639 * 180.02562 * 19 18 17 22 22 H 0.96996 * 120.00227 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47540 * 300.00166 * 9 7 2 24 24 H 1.09000 * 109.47070 * 60.00472 * 9 7 2 25 25 H 1.09007 * 109.47368 * 299.99998 * 10 9 7 26 26 H 1.09003 * 109.47497 * 60.00301 * 10 9 7 27 27 H 1.08997 * 110.41381 * 319.73302 * 12 11 10 28 28 H 1.09006 * 110.41380 * 82.17479 * 12 11 10 29 29 H 1.09004 * 110.32501 * 264.95847 * 13 12 11 30 30 H 1.09000 * 110.32651 * 142.74558 * 13 12 11 31 31 H 1.09001 * 110.32590 * 241.10243 * 14 13 12 32 32 H 1.08998 * 110.41214 * 118.94268 * 14 13 12 33 33 H 1.08998 * 109.47138 * 294.57221 * 17 15 11 34 34 H 1.09003 * 109.46782 * 54.57081 * 17 15 11 35 35 H 1.08997 * 109.47562 * 304.92085 * 18 17 15 36 36 H 1.09005 * 109.47442 * 64.92408 * 18 17 15 37 37 H 0.96699 * 117.00784 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 1.0374 -5.2749 1.3663 13 6 0.7928 -6.7986 1.3246 14 6 1.6908 -7.3175 0.1827 15 6 2.4024 -6.0637 -0.3694 16 1 3.3800 -5.9449 0.0976 17 6 2.5461 -6.1548 -1.8900 18 6 3.5710 -7.2349 -2.2415 19 6 3.8022 -7.2424 -3.7307 20 8 3.2084 -6.4633 -4.4382 21 8 4.6677 -8.1144 -4.2712 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 0.8896 24 1 0.6242 -2.5566 -0.8903 25 1 2.8721 -3.6042 -0.8906 26 1 2.8721 -3.6043 0.8895 27 1 1.8013 -5.0326 2.1049 28 1 0.1102 -4.7470 1.5899 29 1 -0.2547 -7.0081 1.1074 30 1 1.0826 -7.2546 2.2712 31 1 1.0842 -7.7818 -0.5948 32 1 2.4215 -8.0291 0.5672 33 1 1.5828 -6.4105 -2.3313 34 1 2.8816 -5.1943 -2.2813 35 1 4.5100 -7.0254 -1.7291 36 1 3.1951 -8.2086 -1.9275 37 1 4.7829 -8.0811 -5.2308 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390005726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:06 Heat of formation + Delta-G solvation = -134.171808 kcal Electronic energy + Delta-G solvation = -17368.947734 eV Core-core repulsion = 14530.189687 eV Total energy + Delta-G solvation = -2838.758046 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26432 -40.06911 -37.12740 -35.76003 -34.53044 -33.48072 -30.36479 -29.39016 -26.37268 -25.38138 -23.01802 -22.18160 -21.36651 -20.73979 -19.01586 -18.54067 -17.49020 -17.18518 -16.67619 -16.43540 -16.06081 -15.55546 -15.07513 -14.73404 -14.31406 -14.03697 -13.79038 -13.34168 -13.29321 -12.89906 -12.68007 -12.60380 -12.52422 -12.39496 -12.24661 -12.06345 -11.67985 -11.63370 -11.47653 -11.39522 -11.26323 -11.18059 -10.55742 -9.29819 -8.20805 -6.33148 1.26310 1.38129 1.42208 1.50047 2.16592 2.39434 3.12095 3.17330 3.70555 3.83775 3.98662 4.09114 4.23531 4.32547 4.43667 4.48975 4.56687 4.64845 4.68930 4.78306 4.89889 4.97427 5.06109 5.10111 5.16975 5.29776 5.35001 5.39197 5.45675 5.63153 5.67638 5.78495 6.09011 6.21910 6.32764 6.84132 7.03857 7.36149 8.91389 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.005456 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.219057 B = 5130.298589 C = 6186.431070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.041 3.959 10 C 0.071 3.929 11 N -0.530 5.530 12 C 0.030 3.970 13 C -0.116 4.116 14 C -0.112 4.112 15 C 0.059 3.941 16 H 0.060 0.940 17 C -0.091 4.091 18 C -0.102 4.102 19 C 0.480 3.520 20 O -0.561 6.561 21 O -0.512 6.512 22 H 0.264 0.736 23 H -0.012 1.012 24 H -0.015 1.015 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.778 -19.831 -1.171 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.207 1.207 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.057 4.057 11 N -0.254 5.254 12 C -0.098 4.098 13 C -0.154 4.154 14 C -0.150 4.150 15 C -0.049 4.049 16 H 0.078 0.922 17 C -0.129 4.129 18 C -0.140 4.140 19 C 0.325 3.675 20 O -0.452 6.452 21 O -0.325 6.325 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.004 0.996 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 7.985 -19.463 -1.317 21.079 hybrid contribution 0.622 1.498 -0.294 1.648 sum 8.607 -17.966 -1.611 19.986 Atomic orbital electron populations 1.70116 1.07930 1.27864 1.51341 1.25998 0.95755 1.03432 0.94523 0.85467 0.78261 0.77875 0.79224 1.20660 1.18873 1.19279 1.21611 0.93478 0.92354 1.51111 0.92197 1.18812 0.94144 0.92121 0.94547 1.22096 0.95303 0.89381 0.98883 1.65234 1.34564 1.01803 1.23799 1.23110 0.99556 0.97686 0.89415 1.22284 1.00837 0.92438 0.99883 1.22414 0.98930 0.95730 0.97889 1.22728 0.95567 0.91715 0.94867 0.92241 1.21239 0.98991 0.97873 0.94775 1.21378 1.02730 1.03185 0.86684 1.23954 0.74597 0.75939 0.93030 1.90771 1.48966 1.40754 1.64722 1.84492 1.59194 1.56805 1.32022 0.92736 0.99318 0.99613 0.92533 0.95509 0.94196 0.92704 0.91204 0.89210 0.90352 0.88056 0.91934 0.94018 0.85526 0.84322 0.71347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.09 13.29 21.45 0.28 -58.81 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.55 -32.60 9.11 25.60 0.23 -32.37 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.04 2.34 5.15 29.85 0.15 2.50 16 10 C 0.07 3.18 4.75 86.30 0.41 3.59 16 11 N -0.53 -19.73 4.98 -856.73 -4.27 -24.00 16 12 C 0.03 0.99 6.11 86.45 0.53 1.52 16 13 C -0.12 -2.62 7.00 31.49 0.22 -2.40 16 14 C -0.11 -2.15 5.96 31.49 0.19 -1.97 16 15 C 0.06 1.57 2.24 45.06 0.10 1.67 16 16 H 0.06 1.47 8.00 -2.39 -0.02 1.45 16 17 C -0.09 -2.42 4.21 30.59 0.13 -2.30 16 18 C -0.10 -1.75 5.63 29.85 0.17 -1.58 16 19 C 0.48 10.35 8.33 71.24 0.59 10.95 16 20 O -0.56 -17.75 16.68 21.94 0.37 -17.39 16 21 O -0.51 -7.52 13.42 -51.37 -0.69 -8.21 16 22 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 23 H -0.01 -0.70 7.77 -2.39 -0.02 -0.72 16 24 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 25 H 0.06 2.51 7.02 -2.38 -0.02 2.50 16 26 H 0.03 1.16 7.64 -2.39 -0.02 1.14 16 27 H 0.04 1.28 7.68 -2.39 -0.02 1.26 16 28 H 0.05 2.05 8.01 -2.38 -0.02 2.03 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.42 7.74 -2.39 -0.02 1.41 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.85 7.96 -2.39 -0.02 1.83 16 34 H 0.04 1.41 6.99 -2.39 -0.02 1.39 16 35 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.14 1.49 7.77 -2.38 -0.02 1.47 16 37 H 0.43 3.09 9.10 -74.06 -0.67 2.42 16 Total: -1.00 -77.19 305.61 1.28 -75.91 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.37 Total: 4.75 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.19 Total: -19.87 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.99 Total: -82.80 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.32 Total: -25.60 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -77.19 1.28 -75.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390005726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.258 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds