Wall clock time and date at job start Mon Mar 30 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86807 * 120.00237 * 2 1 4 4 H 1.48502 * 109.46931 * 270.00520 * 3 2 1 5 5 H 1.48499 * 109.46757 * 30.00124 * 3 2 1 6 6 H 1.48493 * 109.47067 * 150.00270 * 3 2 1 7 7 C 1.37879 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00126 * 359.72626 * 7 2 1 9 9 C 1.50698 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47141 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47459 * 180.02562 * 10 9 7 12 12 C 1.47846 * 110.99841 * 295.95615 * 11 10 9 13 13 C 1.54908 * 104.79440 * 213.63277 * 12 11 10 14 14 C 1.55135 * 101.65098 * 37.07281 * 13 12 11 15 15 C 1.47438 * 111.00179 * 175.11165 * 11 10 9 16 16 H 1.08997 * 109.89235 * 242.66098 * 15 11 10 17 17 C 1.52996 * 109.89005 * 3.69239 * 15 11 10 18 18 C 1.52997 * 109.47368 * 182.45419 * 17 15 11 19 19 C 1.50700 * 109.47569 * 175.39211 * 18 17 15 20 20 O 1.20827 * 119.99606 * 0.02562 * 19 18 17 21 21 O 1.34228 * 120.00519 * 179.97438 * 19 18 17 22 22 H 0.97003 * 120.00367 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47754 * 300.00095 * 9 7 2 24 24 H 1.08996 * 109.47045 * 60.00362 * 9 7 2 25 25 H 1.09000 * 109.47261 * 300.00571 * 10 9 7 26 26 H 1.09001 * 109.47430 * 60.00303 * 10 9 7 27 27 H 1.08993 * 110.37640 * 332.46521 * 12 11 10 28 28 H 1.09000 * 110.37051 * 94.80618 * 12 11 10 29 29 H 1.08997 * 110.99167 * 278.97406 * 13 12 11 30 30 H 1.09007 * 111.01782 * 155.17715 * 13 12 11 31 31 H 1.09005 * 110.70542 * 205.96209 * 14 13 12 32 32 H 1.08997 * 110.70804 * 82.72870 * 14 13 12 33 33 H 1.09008 * 109.46987 * 302.45358 * 17 15 11 34 34 H 1.08999 * 109.47248 * 62.45116 * 17 15 11 35 35 H 1.08994 * 109.47318 * 295.39403 * 18 17 15 36 36 H 1.08998 * 109.47423 * 55.39358 * 18 17 15 37 37 H 0.96700 * 117.00073 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0035 9 6 3.5114 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 7 5.4904 -2.6366 -0.0022 12 6 6.0203 -2.0315 -1.2428 13 6 7.3262 -2.8112 -1.5367 14 6 6.9373 -4.2488 -1.1026 15 6 6.0188 -4.0082 0.1140 16 1 6.5911 -4.1083 1.0362 17 6 4.8649 -5.0129 0.1060 18 6 5.4190 -6.4273 0.2884 19 6 4.2767 -7.4046 0.3940 20 8 3.1364 -7.0102 0.3295 21 8 4.5260 -8.7132 0.5587 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6800 -0.8911 24 1 3.8751 -0.6805 0.8888 25 1 3.6584 -3.1510 0.8874 26 1 3.6578 -3.1498 -0.8925 27 1 5.3105 -2.1583 -2.0601 28 1 6.2362 -0.9745 -1.0871 29 1 8.1517 -2.4313 -0.9347 30 1 7.5716 -2.7767 -2.5982 31 1 7.8214 -4.8161 -0.8116 32 1 6.3959 -4.7589 -1.8993 33 1 4.1781 -4.7838 0.9209 34 1 4.3349 -4.9500 -0.8443 35 1 6.0413 -6.6870 -0.5679 36 1 6.0176 -6.4685 1.1983 37 1 3.7609 -9.3013 0.6216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390005727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:07 Heat of formation + Delta-G solvation = -125.830307 kcal Electronic energy + Delta-G solvation = -17665.531889 eV Core-core repulsion = 14827.135557 eV Total energy + Delta-G solvation = -2838.396332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37782 -40.37456 -37.15184 -35.67384 -34.45846 -33.72519 -30.76185 -29.40311 -26.25149 -25.50732 -23.19380 -22.20458 -21.59190 -20.01465 -19.10333 -18.85840 -17.59440 -17.29634 -16.78985 -16.30906 -16.25676 -15.66651 -15.08315 -14.86751 -14.51901 -14.03657 -13.86808 -13.69684 -13.27045 -13.01479 -12.72867 -12.57712 -12.45930 -12.32316 -11.92731 -11.84553 -11.74598 -11.67252 -11.58947 -11.51738 -11.42478 -11.23302 -10.78397 -9.15462 -8.32230 -6.37247 1.23267 1.33137 1.36205 1.49833 2.15879 2.34652 3.02802 3.10882 3.70807 3.81111 3.89983 3.95190 4.18379 4.30967 4.41017 4.49040 4.55286 4.62160 4.66388 4.75123 4.83025 4.93427 5.02556 5.08126 5.12191 5.20113 5.26699 5.32005 5.45393 5.48269 5.61619 5.64811 6.12048 6.25016 6.30444 6.70716 7.00413 7.27597 8.85025 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.006241 C = 0.005006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.047538 B = 4485.440413 C = 5591.931838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.025 0.975 9 C 0.000 4.000 10 C 0.081 3.919 11 N -0.538 5.538 12 C 0.032 3.968 13 C -0.119 4.119 14 C -0.131 4.131 15 C 0.072 3.928 16 H 0.102 0.898 17 C -0.125 4.125 18 C -0.100 4.100 19 C 0.476 3.524 20 O -0.564 6.564 21 O -0.511 6.511 22 H 0.267 0.733 23 H 0.016 0.984 24 H 0.020 0.980 25 H 0.058 0.942 26 H 0.015 0.985 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.631 -13.432 -1.435 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.574 4.574 8 H 0.043 0.957 9 C -0.038 4.038 10 C -0.046 4.046 11 N -0.262 5.262 12 C -0.095 4.095 13 C -0.157 4.157 14 C -0.169 4.169 15 C -0.036 4.036 16 H 0.120 0.880 17 C -0.163 4.163 18 C -0.138 4.138 19 C 0.321 3.679 20 O -0.455 6.455 21 O -0.324 6.324 22 H 0.076 0.924 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 19.671 -12.677 -1.043 23.425 hybrid contribution -1.815 -0.058 -0.609 1.915 sum 17.856 -12.735 -1.651 21.994 Atomic orbital electron populations 1.70076 1.08378 1.28284 1.52479 1.26030 0.95639 1.03630 0.93824 0.85580 0.79426 0.77843 0.79333 1.18901 1.20604 1.17166 1.21422 0.92093 0.93060 1.50873 0.95654 1.19437 0.93281 0.94597 0.96463 1.21962 0.86885 0.97064 0.98738 1.63766 1.07305 1.18367 1.36779 1.23135 0.96535 0.99802 0.90048 1.22686 0.96031 0.94662 1.02354 1.22931 1.00049 0.97445 0.96506 1.22612 0.94453 0.85776 1.00750 0.88013 1.21969 0.98479 0.93960 1.01918 1.21402 0.94513 0.89575 1.08286 1.24107 0.90730 0.82660 0.70405 1.90799 1.26587 1.80070 1.48052 1.84489 1.45071 1.18813 1.84064 0.92371 0.96589 0.96152 0.92396 0.96716 0.95236 0.91209 0.89590 0.89449 0.87268 0.91402 0.92890 0.93387 0.84679 0.84572 0.71416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 2 C 0.01 0.34 5.47 84.66 0.46 0.80 16 3 Si 0.96 46.40 27.47 68.60 1.88 48.29 16 4 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 7 C -0.54 -33.14 9.66 25.60 0.25 -32.89 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C 0.00 0.00 4.01 29.85 0.12 0.12 16 10 C 0.08 3.53 3.61 86.30 0.31 3.84 16 11 N -0.54 -18.16 5.20 -860.56 -4.48 -22.64 16 12 C 0.03 0.97 5.53 86.77 0.48 1.45 16 13 C -0.12 -2.34 7.08 31.98 0.23 -2.12 16 14 C -0.13 -2.28 5.58 31.77 0.18 -2.10 16 15 C 0.07 1.74 3.48 45.26 0.16 1.90 16 16 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 17 C -0.12 -3.35 2.71 30.59 0.08 -3.27 16 18 C -0.10 -1.73 5.56 29.85 0.17 -1.57 16 19 C 0.48 10.93 8.33 71.24 0.59 11.53 16 20 O -0.56 -19.31 16.68 21.96 0.37 -18.94 16 21 O -0.51 -8.08 13.42 -51.40 -0.69 -8.77 16 22 H 0.27 16.21 8.31 -92.71 -0.77 15.43 16 23 H 0.02 0.78 6.74 -2.39 -0.02 0.77 16 24 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 25 H 0.06 2.63 6.32 -2.39 -0.02 2.62 16 26 H 0.01 0.67 6.75 -2.39 -0.02 0.65 16 27 H 0.03 0.98 7.71 -2.39 -0.02 0.96 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.20 7.79 -2.39 -0.02 1.18 16 33 H 0.05 1.78 6.12 -2.38 -0.01 1.77 16 34 H 0.05 1.53 6.95 -2.39 -0.02 1.51 16 35 H 0.14 1.54 7.52 -2.39 -0.02 1.53 16 36 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.42 3.72 9.10 -74.06 -0.67 3.05 16 Total: -1.00 -79.75 295.85 0.74 -79.02 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.33 Total: 7.38 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.02 Total: -22.31 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -4.18 Total: -84.66 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.32 Total: -27.71 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.29 kcal Total: -79.75 0.74 -79.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390005727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.814 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds