Wall clock time and date at job start Mon Mar 30 2020 03:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99662 * 2 1 4 4 C 1.53001 * 109.47066 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47429 * 64.99931 * 4 3 2 6 6 C 1.46504 * 119.99879 * 269.99892 * 5 4 3 7 7 C 1.50703 * 109.46666 * 95.10479 * 6 5 4 8 8 H 1.07994 * 120.00444 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00035 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00140 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99782 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47276 * 90.00034 * 11 9 7 13 13 H 1.48501 * 109.47527 * 209.99960 * 11 9 7 14 14 H 1.48501 * 109.47245 * 330.00309 * 11 9 7 15 15 C 1.34774 * 120.00060 * 90.00265 * 5 4 3 16 16 O 1.21276 * 120.00002 * 354.34400 * 15 5 4 17 17 C 1.50700 * 120.00087 * 174.34405 * 15 5 4 18 18 C 1.53000 * 115.55204 * 286.07184 * 17 15 5 19 19 C 1.52999 * 117.49759 * 140.39751 * 17 15 5 20 20 C 1.52996 * 117.49938 * 71.73741 * 17 15 5 21 21 H 1.09001 * 109.46657 * 299.99646 * 1 2 3 22 22 H 1.08996 * 109.47184 * 59.99685 * 1 2 3 23 23 H 1.09000 * 109.46551 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47246 * 60.00250 * 3 2 1 25 25 H 1.09004 * 109.47209 * 300.00066 * 3 2 1 26 26 H 1.08996 * 109.46990 * 185.00239 * 4 3 2 27 27 H 1.09011 * 109.46827 * 304.99836 * 4 3 2 28 28 H 1.09005 * 109.47290 * 215.09866 * 6 5 4 29 29 H 1.08996 * 109.47387 * 335.10620 * 6 5 4 30 30 H 0.97005 * 119.99962 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.47210 * 66.82342 * 18 17 15 32 32 H 1.08999 * 109.47455 * 186.82894 * 18 17 15 33 33 H 1.09006 * 109.46645 * 306.82614 * 18 17 15 34 34 H 1.08997 * 117.50350 * 0.02562 * 19 17 15 35 35 H 1.09001 * 117.49863 * 145.02307 * 19 17 15 36 36 H 1.09001 * 117.50541 * 214.98212 * 20 17 15 37 37 H 1.09001 * 117.50037 * 0.02562 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1054 -0.8919 -1.3426 7 6 2.8412 -1.4739 -1.9208 8 1 2.0230 -0.8240 -2.1936 9 6 2.7292 -2.8362 -2.1017 10 7 1.6258 -3.3442 -2.6058 11 14 4.1448 -3.9604 -1.6306 12 1 3.9896 -4.3858 -0.2163 13 1 4.1410 -5.1566 -2.5106 14 1 5.4293 -3.2324 -1.7903 15 6 4.2616 1.3339 -2.3217 16 8 4.0570 2.5286 -2.2811 17 6 4.8354 0.7096 -3.5675 18 6 6.3032 0.2870 -3.4779 19 6 4.3310 1.2297 -4.9151 20 6 3.9025 -0.1537 -4.4192 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6886 1.8464 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 3.9784 2.1766 0.0890 27 1 3.8514 0.5683 0.8410 28 1 4.9484 -1.1426 -1.9866 29 1 4.2731 -1.3040 -0.3476 30 1 1.5472 -4.3026 -2.7333 31 1 6.4020 -0.5349 -2.7688 32 1 6.6486 -0.0368 -4.4597 33 1 6.9045 1.1316 -3.1415 34 1 3.5844 2.0237 -4.9006 35 1 5.0446 1.2705 -5.7379 36 1 4.3344 -1.0224 -4.9160 37 1 2.8736 -0.2697 -4.0787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393726257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:31 Heat of formation + Delta-G solvation = -48.521889 kcal Electronic energy + Delta-G solvation = -18853.826266 eV Core-core repulsion = 16018.782279 eV Total energy + Delta-G solvation = -2835.043987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.60483 -37.19587 -35.99393 -34.85780 -32.38377 -29.91371 -28.21310 -27.42519 -25.62086 -23.52803 -22.27503 -21.69528 -20.88292 -17.73633 -16.95348 -16.18409 -15.76475 -15.38248 -14.89922 -14.65115 -14.27084 -14.00948 -13.52460 -13.08258 -12.73577 -12.39823 -12.03686 -11.94549 -11.79891 -11.57489 -11.49178 -11.34267 -10.91109 -10.76407 -10.63510 -10.24115 -10.12827 -9.84741 -9.44106 -9.29060 -8.97022 -8.77966 -8.49626 -7.67495 -6.00031 -3.92674 3.28196 3.34042 3.35594 3.37342 3.79915 4.42107 4.44676 4.54673 5.18520 5.30176 5.36877 5.50889 5.55040 5.67980 5.69324 5.77578 5.91536 6.00086 6.08366 6.09548 6.13171 6.19275 6.31176 6.33297 6.40444 6.53471 6.62212 6.70310 6.89929 7.03796 7.44926 7.66032 7.92767 8.24663 8.60946 8.96928 9.11724 9.60999 11.13291 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.013649 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.897200 B = 2051.006009 C = 3054.216015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.345 6.345 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.582 5.582 6 C 0.209 3.791 7 C -0.491 4.491 8 H 0.083 0.917 9 C 0.073 3.927 10 N -0.900 5.900 11 Si 0.861 3.139 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.557 3.443 16 O -0.573 6.573 17 C -0.153 4.153 18 C -0.106 4.106 19 C -0.167 4.167 20 C -0.125 4.125 21 H 0.022 0.978 22 H 0.031 0.969 23 H 0.084 0.916 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 5.464 1.738 7.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.263 6.263 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.088 3.912 7 C -0.530 4.530 8 H 0.101 0.899 9 C -0.128 4.128 10 N -0.539 5.539 11 Si 0.689 3.311 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.192 1.192 15 C 0.345 3.655 16 O -0.454 6.454 17 C -0.156 4.156 18 C -0.163 4.163 19 C -0.204 4.204 20 C -0.162 4.162 21 H 0.041 0.959 22 H 0.049 0.951 23 H 0.103 0.897 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.203 5.708 1.741 7.299 hybrid contribution 0.347 -0.671 0.368 0.840 sum 4.550 5.037 2.109 7.108 Atomic orbital electron populations 1.22563 0.82657 1.02414 0.97977 1.88299 1.18043 1.25074 1.94846 1.22827 0.94747 0.86387 0.99155 1.21350 0.92627 0.98763 0.87224 1.47849 1.63933 1.08947 1.10412 1.19926 0.98706 0.75286 0.97269 1.21198 0.99732 0.92349 1.39688 0.89890 1.24740 0.95125 0.97636 0.95293 1.69874 1.26037 1.12202 1.45823 0.87100 0.83922 0.81289 0.78789 1.20432 1.21394 1.19199 1.19460 0.76891 0.85626 0.83538 1.90572 1.56093 1.15814 1.82921 1.21132 0.96593 1.06929 0.90935 1.21273 0.91854 1.00983 1.02228 1.23038 1.03374 0.99305 0.94706 1.23149 1.01371 0.92395 0.99325 0.95924 0.95055 0.89741 0.94192 0.93630 0.89853 0.90354 0.94562 0.95738 0.92957 0.91479 0.92040 0.92690 0.88976 0.89107 0.88838 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 11.01 101.05 1.11 1.85 16 2 O -0.35 -7.25 7.98 -35.23 -0.28 -7.53 16 3 C 0.05 0.87 6.28 37.16 0.23 1.10 16 4 C 0.12 2.26 5.81 -4.04 -0.02 2.24 16 5 N -0.58 -12.13 2.43 -175.06 -0.43 -12.56 16 6 C 0.21 4.66 3.78 -5.19 -0.02 4.64 16 7 C -0.49 -12.51 5.88 -34.44 -0.20 -12.71 16 8 H 0.08 2.38 6.90 -52.49 -0.36 2.02 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 10 N -0.90 -25.74 13.96 55.43 0.77 -24.96 16 11 Si 0.86 20.10 27.47 -169.99 -4.67 15.43 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 15 C 0.56 11.80 6.82 -10.99 -0.07 11.73 16 16 O -0.57 -13.20 16.55 5.56 0.09 -13.11 16 17 C -0.15 -2.88 1.37 -155.66 -0.21 -3.09 16 18 C -0.11 -1.70 9.52 37.16 0.35 -1.34 16 19 C -0.17 -2.85 9.78 -26.69 -0.26 -3.11 16 20 C -0.13 -2.40 8.39 -26.70 -0.22 -2.63 16 21 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 1.42 7.51 -51.93 -0.39 1.03 16 27 H 0.08 1.32 7.86 -51.92 -0.41 0.91 16 28 H 0.04 0.80 3.95 -51.93 -0.21 0.59 16 29 H 0.02 0.55 7.26 -51.93 -0.38 0.17 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 1.11 6.20 -51.93 -0.32 0.79 16 32 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 37 H 0.12 2.66 6.48 -51.93 -0.34 2.32 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -29.85 299.09 -5.21 -35.06 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.79 Total: 2.64 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 0.58 Total: 0.52 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.35 Total: -37.52 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.19 Total: -20.64 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.85 -5.21 -35.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393726257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.458 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds