Wall clock time and date at job start Mon Mar 30 2020 03:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99662 * 2 1 4 4 C 1.53001 * 109.47066 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47429 * 64.99931 * 4 3 2 6 6 C 1.46504 * 119.99879 * 269.99892 * 5 4 3 7 7 C 1.50703 * 109.46666 * 95.10479 * 6 5 4 8 8 H 1.07994 * 120.00444 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00035 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00140 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99782 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47276 * 90.00034 * 11 9 7 13 13 H 1.48501 * 109.47527 * 209.99960 * 11 9 7 14 14 H 1.48501 * 109.47245 * 330.00309 * 11 9 7 15 15 C 1.34774 * 120.00060 * 90.00265 * 5 4 3 16 16 O 1.21276 * 120.00002 * 354.34400 * 15 5 4 17 17 C 1.50700 * 120.00087 * 174.34405 * 15 5 4 18 18 C 1.53000 * 115.55204 * 286.07184 * 17 15 5 19 19 C 1.52999 * 117.49759 * 140.39751 * 17 15 5 20 20 C 1.52996 * 117.49938 * 71.73741 * 17 15 5 21 21 H 1.09001 * 109.46657 * 299.99646 * 1 2 3 22 22 H 1.08996 * 109.47184 * 59.99685 * 1 2 3 23 23 H 1.09000 * 109.46551 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47246 * 60.00250 * 3 2 1 25 25 H 1.09004 * 109.47209 * 300.00066 * 3 2 1 26 26 H 1.08996 * 109.46990 * 185.00239 * 4 3 2 27 27 H 1.09011 * 109.46827 * 304.99836 * 4 3 2 28 28 H 1.09005 * 109.47290 * 215.09866 * 6 5 4 29 29 H 1.08996 * 109.47387 * 335.10620 * 6 5 4 30 30 H 0.97005 * 119.99962 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.47210 * 66.82342 * 18 17 15 32 32 H 1.08999 * 109.47455 * 186.82894 * 18 17 15 33 33 H 1.09006 * 109.46645 * 306.82614 * 18 17 15 34 34 H 1.08997 * 117.50350 * 0.02562 * 19 17 15 35 35 H 1.09001 * 117.49863 * 145.02307 * 19 17 15 36 36 H 1.09001 * 117.50541 * 214.98212 * 20 17 15 37 37 H 1.09001 * 117.50037 * 0.02562 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.1054 -0.8919 -1.3426 7 6 2.8412 -1.4739 -1.9208 8 1 2.0230 -0.8240 -2.1936 9 6 2.7292 -2.8362 -2.1017 10 7 1.6258 -3.3442 -2.6058 11 14 4.1448 -3.9604 -1.6306 12 1 3.9896 -4.3858 -0.2163 13 1 4.1410 -5.1566 -2.5106 14 1 5.4293 -3.2324 -1.7903 15 6 4.2616 1.3339 -2.3217 16 8 4.0570 2.5286 -2.2811 17 6 4.8354 0.7096 -3.5675 18 6 6.3032 0.2870 -3.4779 19 6 4.3310 1.2297 -4.9151 20 6 3.9025 -0.1537 -4.4192 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6886 1.8464 0.8900 25 1 1.6885 1.8465 -0.8900 26 1 3.9784 2.1766 0.0890 27 1 3.8514 0.5683 0.8410 28 1 4.9484 -1.1426 -1.9866 29 1 4.2731 -1.3040 -0.3476 30 1 1.5472 -4.3026 -2.7333 31 1 6.4020 -0.5349 -2.7688 32 1 6.6486 -0.0368 -4.4597 33 1 6.9045 1.1316 -3.1415 34 1 3.5844 2.0237 -4.9006 35 1 5.0446 1.2705 -5.7379 36 1 4.3344 -1.0224 -4.9160 37 1 2.8736 -0.2697 -4.0787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393726257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:31 Heat of formation + Delta-G solvation = -67.613479 kcal Electronic energy + Delta-G solvation = -18854.654140 eV Core-core repulsion = 16018.782279 eV Total energy + Delta-G solvation = -2835.871861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21607 -38.73210 -37.53625 -36.57852 -34.36647 -31.52155 -29.61996 -29.17261 -27.12709 -25.12818 -24.10452 -23.18034 -22.38035 -19.35733 -18.92913 -17.76653 -17.40308 -16.94454 -16.51900 -16.21689 -15.95952 -15.66892 -15.09103 -14.62290 -14.41169 -14.03022 -13.65289 -13.40089 -13.24279 -13.21464 -13.02359 -12.82919 -12.61658 -12.37780 -12.30610 -11.91101 -11.81346 -11.41295 -11.28531 -10.80837 -10.58819 -10.51876 -10.35170 -9.39039 -8.05396 -6.01218 1.44719 1.47010 1.53634 1.69808 2.24684 2.48846 2.96730 3.05257 3.31169 3.68128 3.93203 4.06676 4.14684 4.20521 4.26406 4.37351 4.51696 4.55349 4.63590 4.77191 4.80266 4.83477 4.87846 4.89441 4.91975 4.98726 5.08085 5.21451 5.33410 5.42741 5.67486 5.78471 6.39079 6.46499 6.70410 6.99189 7.31518 7.55766 9.11026 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.013649 C = 0.009165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.897200 B = 2051.006009 C = 3054.216015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.378 6.378 3 C 0.050 3.950 4 C 0.116 3.884 5 N -0.586 5.586 6 C 0.216 3.784 7 C -0.468 4.468 8 H 0.039 0.961 9 C 0.019 3.981 10 N -0.948 5.948 11 Si 0.919 3.081 12 H -0.278 1.278 13 H -0.293 1.293 14 H -0.238 1.238 15 C 0.548 3.452 16 O -0.596 6.596 17 C -0.163 4.163 18 C -0.102 4.102 19 C -0.145 4.145 20 C -0.135 4.135 21 H 0.059 0.941 22 H 0.022 0.978 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.019 0.981 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.258 0.742 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.650 5.783 2.257 9.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.296 6.296 3 C -0.028 4.028 4 C -0.007 4.007 5 N -0.315 5.315 6 C 0.095 3.905 7 C -0.507 4.507 8 H 0.057 0.943 9 C -0.177 4.177 10 N -0.590 5.590 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.219 1.219 14 H -0.162 1.162 15 C 0.337 3.663 16 O -0.479 6.479 17 C -0.166 4.166 18 C -0.159 4.159 19 C -0.183 4.183 20 C -0.173 4.173 21 H 0.078 0.922 22 H 0.041 0.959 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.038 0.962 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.597 6.050 2.276 9.236 hybrid contribution -0.505 -0.665 0.214 0.862 sum 6.092 5.385 2.490 8.504 Atomic orbital electron populations 1.22591 0.81532 1.02024 0.99329 1.88220 1.19540 1.26801 1.95086 1.22875 0.94861 0.85457 0.99601 1.21615 0.92531 0.99771 0.86747 1.47908 1.63778 1.08381 1.11406 1.19766 0.97212 0.76138 0.97417 1.21141 0.99600 0.91691 1.38274 0.94275 1.25441 0.97459 0.99216 0.95633 1.70037 1.28535 1.12294 1.48170 0.86148 0.82056 0.79269 0.78061 1.20428 1.21901 1.16151 1.19967 0.76534 0.85500 0.84289 1.90549 1.57134 1.16787 1.83447 1.21356 0.98103 1.06759 0.90405 1.21302 0.89574 1.01215 1.03772 1.23114 1.03143 0.97028 0.94976 1.22902 0.99322 0.94201 1.00839 0.92219 0.95896 0.91074 0.90513 0.96223 0.88442 0.88526 0.93266 0.94987 0.93289 0.91987 0.89396 0.91537 0.90329 0.85353 0.87656 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 11.01 113.37 1.25 2.77 16 2 O -0.38 -15.97 7.98 -148.98 -1.19 -17.15 16 3 C 0.05 1.80 6.28 71.98 0.45 2.25 16 4 C 0.12 4.07 5.81 86.38 0.50 4.57 16 5 N -0.59 -23.89 2.43 -826.15 -2.01 -25.90 16 6 C 0.22 9.36 3.78 85.63 0.32 9.69 16 7 C -0.47 -24.17 5.88 25.60 0.15 -24.02 16 8 H 0.04 2.35 6.90 -2.91 -0.02 2.33 16 9 C 0.02 1.01 5.47 84.66 0.46 1.47 16 10 N -0.95 -55.91 13.96 21.45 0.30 -55.61 16 11 Si 0.92 40.65 27.47 68.60 1.88 42.53 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.24 -9.35 6.54 99.48 0.65 -8.70 16 15 C 0.55 22.81 6.82 87.66 0.60 23.41 16 16 O -0.60 -27.19 16.55 -3.02 -0.05 -27.24 16 17 C -0.16 -5.86 1.37 -52.93 -0.07 -5.94 16 18 C -0.10 -2.89 9.52 71.98 0.69 -2.20 16 19 C -0.15 -4.71 9.78 30.62 0.30 -4.41 16 20 C -0.14 -5.13 8.39 30.62 0.26 -4.88 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.10 3.14 7.51 -2.39 -0.02 3.12 16 27 H 0.10 3.02 7.86 -2.38 -0.02 3.00 16 28 H 0.05 2.04 3.95 -2.38 -0.01 2.03 16 29 H 0.03 1.36 7.26 -2.39 -0.02 1.35 16 30 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 31 H 0.06 1.82 6.20 -2.39 -0.01 1.81 16 32 H 0.09 2.03 8.08 -2.39 -0.02 2.02 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.13 3.20 8.14 -2.39 -0.02 3.19 16 36 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.07 3.51 6.48 -2.39 -0.02 3.50 16 Total: -1.00 -65.80 299.09 4.83 -60.97 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.99 Total: 19.69 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 4.91 Total: 2.71 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.71 Total: -81.51 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.24 Total: -44.39 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.88 Total: 42.53 kcal Total: -65.80 4.83 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393726257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.641 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds