Wall clock time and date at job start Mon Mar 30 2020 03:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 120.00064 * 2 1 4 4 H 1.48501 * 109.47129 * 270.00037 * 3 2 1 5 5 H 1.48499 * 109.47302 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.46939 * 149.99832 * 3 2 1 7 7 C 1.37872 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99940 * 180.30409 * 7 2 1 9 9 C 1.50704 * 120.00227 * 0.29776 * 7 2 1 10 10 C 1.53002 * 115.54841 * 84.82709 * 9 7 2 11 11 N 1.46901 * 109.47015 * 39.70396 * 10 9 7 12 12 C 1.46901 * 110.99881 * 173.14901 * 11 10 9 13 13 C 1.53000 * 110.45984 * 65.06785 * 12 11 10 14 14 O 1.42897 * 109.47312 * 298.52179 * 13 12 11 15 15 C 1.54507 * 110.51226 * 187.68236 * 12 11 10 16 16 C 1.54475 * 104.06797 * 118.78014 * 15 12 11 17 17 O 1.44428 * 104.80304 * 23.97524 * 16 15 12 18 18 C 1.44430 * 105.27473 * 319.48897 * 17 16 15 19 19 C 1.52998 * 117.51620 * 230.52532 * 9 7 2 20 20 C 1.52997 * 117.50087 * 299.15506 * 9 7 2 21 21 H 0.97001 * 119.99536 * 5.03754 * 1 2 3 22 22 H 1.08998 * 109.46695 * 279.70377 * 10 9 7 23 23 H 1.09003 * 109.46889 * 159.70320 * 10 9 7 24 24 H 1.00899 * 111.00038 * 297.09986 * 11 10 9 25 25 H 1.09000 * 109.47168 * 178.51479 * 13 12 11 26 26 H 1.09007 * 109.46302 * 58.52023 * 13 12 11 27 27 H 0.96698 * 114.00173 * 179.97438 * 14 13 12 28 28 H 1.09000 * 110.50593 * 237.42327 * 15 12 11 29 29 H 1.08995 * 110.50985 * 359.97438 * 15 12 11 30 30 H 1.08994 * 110.37742 * 142.80763 * 16 15 12 31 31 H 1.09008 * 110.37199 * 265.03883 * 16 15 12 32 32 H 1.08997 * 110.37360 * 281.68159 * 18 17 16 33 33 H 1.08999 * 110.37177 * 159.34168 * 18 17 16 34 34 H 1.08999 * 117.49702 * 214.96827 * 19 9 7 35 35 H 1.09001 * 117.50447 * 359.97438 * 19 9 7 36 36 H 1.09000 * 117.49680 * 359.97438 * 20 9 7 37 37 H 1.08997 * 117.50369 * 144.99651 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 0.0044 9 6 1.2509 -2.4992 -0.0079 10 6 0.8194 -3.0042 -1.3862 11 7 1.8916 -2.7515 -2.3580 12 6 1.5819 -3.3669 -3.6555 13 6 0.3504 -2.7077 -4.2797 14 8 -0.7782 -2.9008 -3.4248 15 6 2.7939 -3.2614 -4.6078 16 6 3.1611 -4.7306 -4.9126 17 8 1.9421 -5.4707 -4.6836 18 6 1.3601 -4.8876 -3.4973 19 6 1.6398 -3.5458 1.0381 20 6 0.3198 -2.7840 1.1722 21 1 -0.4849 0.8368 -0.0738 22 1 -0.0845 -2.4809 -1.6981 23 1 0.6203 -4.0746 -1.3349 24 1 2.0626 -1.7622 -2.4587 25 1 0.1510 -3.1579 -5.2522 26 1 0.5336 -1.6403 -4.4041 27 1 -1.5962 -2.5077 -3.7585 28 1 2.5158 -2.7395 -5.5234 29 1 3.6228 -2.7522 -4.1162 30 1 3.4792 -4.8351 -5.9498 31 1 3.9469 -5.0729 -4.2391 32 1 1.8684 -5.2545 -2.6056 33 1 0.2948 -5.1125 -3.4474 34 1 1.5881 -4.5942 0.7443 35 1 2.4411 -3.2909 1.7316 36 1 0.2525 -2.0276 1.9542 37 1 -0.6003 -3.3311 0.9668 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393894980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:34 Heat of formation + Delta-G solvation = -63.684217 kcal Electronic energy + Delta-G solvation = -18624.096832 eV Core-core repulsion = 15788.395357 eV Total energy + Delta-G solvation = -2835.701475 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67782 -36.91194 -36.12596 -33.85800 -31.84977 -30.55944 -28.44733 -25.51358 -25.42766 -24.13251 -22.19110 -20.90314 -19.23251 -18.90540 -17.07831 -16.15336 -15.79418 -15.64309 -15.23359 -14.56588 -14.45341 -14.16893 -13.81442 -13.02299 -12.68051 -12.37420 -11.99523 -11.85742 -11.44730 -11.25944 -11.11273 -10.94817 -10.81759 -10.74094 -10.45929 -10.38103 -10.02185 -9.75580 -9.46621 -9.20901 -8.77611 -8.34455 -7.98287 -7.21357 -5.95761 -4.00665 3.28418 3.37108 3.40917 4.20957 4.36710 4.43518 4.83408 5.05348 5.10510 5.21636 5.33689 5.46881 5.48394 5.59062 5.69391 5.85475 5.95387 6.07547 6.10773 6.14032 6.28984 6.33977 6.55294 6.77642 6.88171 6.92626 7.07432 7.20382 7.33505 7.63988 7.64629 7.91953 7.95723 8.15758 8.41573 8.62192 9.02153 9.62713 11.11854 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.008231 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.900679 B = 3400.833817 C = 3680.502948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.067 3.933 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.479 4.479 8 H 0.059 0.941 9 C 0.050 3.950 10 C 0.102 3.898 11 N -0.655 5.655 12 C 0.083 3.917 13 C 0.057 3.943 14 O -0.551 6.551 15 C -0.143 4.143 16 C 0.050 3.950 17 O -0.384 6.384 18 C 0.062 3.938 19 C -0.213 4.213 20 C -0.159 4.159 21 H 0.256 0.744 22 H 0.066 0.934 23 H 0.034 0.966 24 H 0.352 0.648 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.368 0.632 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -5.085 -9.479 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.049 3.951 10 C -0.027 4.027 11 N -0.287 5.287 12 C -0.010 4.010 13 C -0.023 4.023 14 O -0.356 6.356 15 C -0.181 4.181 16 C -0.027 4.027 17 O -0.303 6.303 18 C -0.015 4.015 19 C -0.250 4.250 20 C -0.197 4.197 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.173 0.827 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.214 0.786 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.039 -5.971 -8.952 10.952 hybrid contribution -0.639 2.139 -0.544 2.297 sum 1.400 -3.832 -9.496 10.335 Atomic orbital electron populations 1.70036 1.05644 1.26216 1.49745 1.24994 0.94775 0.98566 0.95235 0.86724 0.80039 0.84066 0.77956 1.20890 1.21495 1.19925 1.20424 0.92396 0.88606 1.50336 0.92289 1.18880 0.97023 0.92906 0.86243 1.21638 0.92479 0.97004 0.91543 1.60686 1.44106 1.19804 1.04151 1.22340 0.91353 0.95567 0.91713 1.23013 0.87723 0.98848 0.92760 1.86742 1.19489 1.80867 1.48518 1.22922 0.98582 0.97770 0.98836 1.23313 0.88181 0.90237 1.00977 1.89066 1.37166 1.58041 1.46023 1.23463 0.99197 0.90882 0.87947 1.22999 0.99223 0.95714 1.07069 1.22476 0.91248 1.01565 1.04435 0.93390 0.91586 0.94792 0.82716 0.94208 0.93841 0.78553 0.91207 0.88966 0.89733 0.92099 0.91178 0.88913 0.92119 0.91012 0.90272 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.39 12.76 55.43 0.71 -23.68 16 2 C 0.07 1.78 5.42 -17.82 -0.10 1.68 16 3 Si 0.88 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.48 -12.74 7.52 -34.44 -0.26 -13.00 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.05 1.24 1.80 -155.66 -0.28 0.96 16 10 C 0.10 2.27 4.69 -3.82 -0.02 2.25 16 11 N -0.65 -13.09 5.73 -98.37 -0.56 -13.65 16 12 C 0.08 1.38 0.89 -130.03 -0.12 1.26 16 13 C 0.06 0.88 5.89 37.16 0.22 1.10 16 14 O -0.55 -9.13 9.46 -35.23 -0.33 -9.47 16 15 C -0.14 -1.97 6.52 -25.17 -0.16 -2.13 16 16 C 0.05 0.66 7.63 37.93 0.29 0.95 16 17 O -0.38 -6.14 11.65 -35.23 -0.41 -6.55 16 18 C 0.06 1.04 5.40 37.94 0.20 1.24 16 19 C -0.21 -4.89 9.88 -26.73 -0.26 -5.16 16 20 C -0.16 -3.89 9.29 -26.73 -0.25 -4.14 16 21 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 22 H 0.07 1.61 5.54 -51.93 -0.29 1.32 16 23 H 0.03 0.74 6.40 -51.93 -0.33 0.41 16 24 H 0.35 7.56 7.83 -39.29 -0.31 7.26 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 27 H 0.37 4.57 9.12 45.56 0.42 4.98 16 28 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 29 H 0.09 1.28 7.97 -51.93 -0.41 0.87 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.07 1.25 7.64 -51.93 -0.40 0.85 16 33 H 0.09 1.58 7.32 -51.93 -0.38 1.20 16 34 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 35 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -28.91 296.14 -6.92 -35.83 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.73 Total: -14.98 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.14 Total: -37.33 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.74 Total: -16.02 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.91 -6.92 -35.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.855 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds