Wall clock time and date at job start Mon Mar 30 2020 03:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86794 * 120.00064 * 2 1 4 4 H 1.48501 * 109.47129 * 270.00037 * 3 2 1 5 5 H 1.48499 * 109.47302 * 30.00233 * 3 2 1 6 6 H 1.48499 * 109.46939 * 149.99832 * 3 2 1 7 7 C 1.37872 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99940 * 180.30409 * 7 2 1 9 9 C 1.50704 * 120.00227 * 0.29776 * 7 2 1 10 10 C 1.53002 * 115.54841 * 84.82709 * 9 7 2 11 11 N 1.46901 * 109.47015 * 39.70396 * 10 9 7 12 12 C 1.46901 * 110.99881 * 173.14901 * 11 10 9 13 13 C 1.53000 * 110.45984 * 65.06785 * 12 11 10 14 14 O 1.42897 * 109.47312 * 298.52179 * 13 12 11 15 15 C 1.54507 * 110.51226 * 187.68236 * 12 11 10 16 16 C 1.54475 * 104.06797 * 118.78014 * 15 12 11 17 17 O 1.44428 * 104.80304 * 23.97524 * 16 15 12 18 18 C 1.44430 * 105.27473 * 319.48897 * 17 16 15 19 19 C 1.52998 * 117.51620 * 230.52532 * 9 7 2 20 20 C 1.52997 * 117.50087 * 299.15506 * 9 7 2 21 21 H 0.97001 * 119.99536 * 5.03754 * 1 2 3 22 22 H 1.08998 * 109.46695 * 279.70377 * 10 9 7 23 23 H 1.09003 * 109.46889 * 159.70320 * 10 9 7 24 24 H 1.00899 * 111.00038 * 297.09986 * 11 10 9 25 25 H 1.09000 * 109.47168 * 178.51479 * 13 12 11 26 26 H 1.09007 * 109.46302 * 58.52023 * 13 12 11 27 27 H 0.96698 * 114.00173 * 179.97438 * 14 13 12 28 28 H 1.09000 * 110.50593 * 237.42327 * 15 12 11 29 29 H 1.08995 * 110.50985 * 359.97438 * 15 12 11 30 30 H 1.08994 * 110.37742 * 142.80763 * 16 15 12 31 31 H 1.09008 * 110.37199 * 265.03883 * 16 15 12 32 32 H 1.08997 * 110.37360 * 281.68159 * 18 17 16 33 33 H 1.08999 * 110.37177 * 159.34168 * 18 17 16 34 34 H 1.08999 * 117.49702 * 214.96827 * 19 9 7 35 35 H 1.09001 * 117.50447 * 359.97438 * 19 9 7 36 36 H 1.09000 * 117.49680 * 359.97438 * 20 9 7 37 37 H 1.08997 * 117.50369 * 144.99651 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 0.0044 9 6 1.2509 -2.4992 -0.0079 10 6 0.8194 -3.0042 -1.3862 11 7 1.8916 -2.7515 -2.3580 12 6 1.5819 -3.3669 -3.6555 13 6 0.3504 -2.7077 -4.2797 14 8 -0.7782 -2.9008 -3.4248 15 6 2.7939 -3.2614 -4.6078 16 6 3.1611 -4.7306 -4.9126 17 8 1.9421 -5.4707 -4.6836 18 6 1.3601 -4.8876 -3.4973 19 6 1.6398 -3.5458 1.0381 20 6 0.3198 -2.7840 1.1722 21 1 -0.4849 0.8368 -0.0738 22 1 -0.0845 -2.4809 -1.6981 23 1 0.6203 -4.0746 -1.3349 24 1 2.0626 -1.7622 -2.4587 25 1 0.1510 -3.1579 -5.2522 26 1 0.5336 -1.6403 -4.4041 27 1 -1.5962 -2.5077 -3.7585 28 1 2.5158 -2.7395 -5.5234 29 1 3.6228 -2.7522 -4.1162 30 1 3.4792 -4.8351 -5.9498 31 1 3.9469 -5.0729 -4.2391 32 1 1.8684 -5.2545 -2.6056 33 1 0.2948 -5.1125 -3.4474 34 1 1.5881 -4.5942 0.7443 35 1 2.4411 -3.2909 1.7316 36 1 0.2525 -2.0276 1.9542 37 1 -0.6003 -3.3311 0.9668 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393894980.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:33 Heat of formation + Delta-G solvation = -85.086069 kcal Electronic energy + Delta-G solvation = -18625.024886 eV Core-core repulsion = 15788.395357 eV Total energy + Delta-G solvation = -2836.629529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94759 -38.54916 -37.58726 -35.29199 -33.89904 -31.87666 -29.74008 -27.47579 -26.76820 -25.77406 -23.36000 -22.82403 -20.83638 -20.52496 -18.38078 -17.76259 -17.28400 -16.96800 -16.63211 -16.50456 -15.78605 -15.68159 -15.29955 -14.62491 -14.32741 -13.76460 -13.56522 -13.33386 -12.97018 -12.85248 -12.77782 -12.69801 -12.32789 -12.24971 -12.09954 -11.89049 -11.72767 -11.16834 -10.94159 -10.77907 -10.65298 -10.31485 -9.87193 -8.83146 -8.00290 -6.10210 1.42532 1.46514 1.54613 2.47548 2.99562 3.17387 3.28980 3.49346 3.68037 3.78499 3.90886 4.13921 4.30233 4.36731 4.46001 4.48738 4.60926 4.70816 4.79910 4.85928 4.88438 4.91426 5.04203 5.05220 5.08936 5.15582 5.28208 5.49024 5.69230 5.76940 5.81622 5.90246 6.45244 6.63676 6.77564 6.86796 6.97079 7.55521 9.06721 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.008231 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.900679 B = 3400.833817 C = 3680.502948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.486 4.486 8 H 0.049 0.951 9 C 0.028 3.972 10 C 0.120 3.880 11 N -0.657 5.657 12 C 0.075 3.925 13 C 0.060 3.940 14 O -0.573 6.573 15 C -0.138 4.138 16 C 0.047 3.953 17 O -0.393 6.393 18 C 0.069 3.931 19 C -0.196 4.196 20 C -0.165 4.165 21 H 0.255 0.745 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.342 0.658 25 H 0.061 0.939 26 H 0.041 0.959 27 H 0.384 0.616 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.281 -5.183 -10.942 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.028 3.972 10 C -0.009 4.009 11 N -0.289 5.289 12 C -0.017 4.017 13 C -0.020 4.020 14 O -0.381 6.381 15 C -0.176 4.176 16 C -0.029 4.029 17 O -0.312 6.312 18 C -0.009 4.009 19 C -0.233 4.233 20 C -0.203 4.203 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.161 0.839 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.234 0.766 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.879 -6.081 -10.432 12.413 hybrid contribution -0.889 2.126 -0.093 2.306 sum 1.990 -3.956 -10.524 11.418 Atomic orbital electron populations 1.70144 1.06793 1.26756 1.50634 1.25574 0.95423 1.01283 0.95019 0.85789 0.78609 0.80364 0.78241 1.19785 1.21873 1.19949 1.20543 0.91988 0.89758 1.50169 0.93298 1.19119 0.97310 0.93139 0.87662 1.21323 0.92305 0.96411 0.90867 1.60614 1.43403 1.19074 1.05813 1.22517 0.93290 0.95154 0.90788 1.22963 0.87010 0.98703 0.93294 1.86677 1.20634 1.81219 1.49591 1.22928 0.97156 0.98550 0.98927 1.23526 0.87115 0.89291 1.02956 1.89059 1.38297 1.58527 1.45321 1.23274 0.98710 0.90982 0.87893 1.22989 0.98010 0.96398 1.05900 1.22360 0.92276 1.01676 1.04035 0.93553 0.93569 0.94691 0.83854 0.92043 0.94058 0.76650 0.89013 0.89204 0.86613 0.91983 0.92720 0.89539 0.90114 0.91167 0.92602 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.53 12.76 21.45 0.27 -50.26 16 2 C 0.03 1.43 5.42 84.65 0.46 1.89 16 3 Si 0.94 42.49 29.54 68.60 2.03 44.51 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.49 -25.88 7.52 25.60 0.19 -25.69 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.03 1.40 1.80 -52.93 -0.10 1.31 16 10 C 0.12 5.34 4.69 86.30 0.40 5.74 16 11 N -0.66 -25.89 5.73 -465.15 -2.67 -28.56 16 12 C 0.07 2.37 0.89 4.55 0.00 2.38 16 13 C 0.06 1.76 5.89 71.98 0.42 2.18 16 14 O -0.57 -18.57 9.46 -148.98 -1.41 -19.98 16 15 C -0.14 -3.44 6.52 31.61 0.21 -3.24 16 16 C 0.05 1.11 7.63 72.48 0.55 1.66 16 17 O -0.39 -11.71 11.65 -148.98 -1.74 -13.45 16 18 C 0.07 2.21 5.40 72.49 0.39 2.60 16 19 C -0.20 -8.88 9.88 30.59 0.30 -8.58 16 20 C -0.17 -8.13 9.29 30.59 0.28 -7.85 16 21 H 0.26 13.75 8.32 -92.71 -0.77 12.98 16 22 H 0.05 2.26 5.54 -2.39 -0.01 2.25 16 23 H 0.03 1.52 6.40 -2.39 -0.02 1.51 16 24 H 0.34 14.58 7.83 -89.69 -0.70 13.88 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.38 9.23 9.12 -74.06 -0.68 8.55 16 28 H 0.09 1.90 7.73 -2.39 -0.02 1.88 16 29 H 0.09 2.31 7.97 -2.39 -0.02 2.29 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 1.92 7.64 -2.39 -0.02 1.90 16 33 H 0.09 2.87 7.32 -2.39 -0.02 2.86 16 34 H 0.08 3.31 8.08 -2.39 -0.02 3.29 16 35 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.06 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -60.48 296.14 -0.69 -61.17 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.31 Total: 34.15 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.13 Total: -27.58 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.39 Total: -78.82 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -3.14 Total: -33.43 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -60.48 -0.69 -61.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894980.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.912 kcal (2) G-P(sol) polarization free energy of solvation -60.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds