Wall clock time and date at job start Mon Mar 30 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48495 * 109.47155 * 270.00167 * 3 2 1 5 5 H 1.48501 * 109.46867 * 30.00262 * 3 2 1 6 6 H 1.48495 * 109.47001 * 149.99972 * 3 2 1 7 7 C 1.37875 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99834 * 181.07019 * 7 2 1 9 9 C 1.50698 * 119.99797 * 1.06842 * 7 2 1 10 10 C 1.53001 * 115.55366 * 84.68491 * 9 7 2 11 11 N 1.46902 * 109.47110 * 39.74865 * 10 9 7 12 12 C 1.46901 * 111.00124 * 185.77718 * 11 10 9 13 13 C 1.52995 * 110.43444 * 293.15792 * 12 11 10 14 14 O 1.42901 * 109.47175 * 64.77173 * 13 12 11 15 15 C 1.54812 * 110.59815 * 170.53686 * 12 11 10 16 16 C 1.55001 * 102.09002 * 262.14828 * 15 12 11 17 17 O 1.44571 * 103.58614 * 323.05535 * 16 15 12 18 18 C 1.43748 * 106.86912 * 39.88086 * 17 16 15 19 19 C 1.53008 * 117.51892 * 230.38046 * 9 7 2 20 20 C 1.53003 * 117.49917 * 299.00930 * 9 7 2 21 21 H 0.97002 * 119.99580 * 5.03052 * 1 2 3 22 22 H 1.09009 * 109.46896 * 279.75809 * 10 9 7 23 23 H 1.08996 * 109.47517 * 159.75767 * 10 9 7 24 24 H 1.00897 * 111.00262 * 309.73505 * 11 10 9 25 25 H 1.09000 * 109.47370 * 184.77372 * 13 12 11 26 26 H 1.09004 * 109.47541 * 304.76846 * 13 12 11 27 27 H 0.96703 * 113.99937 * 179.97438 * 14 13 12 28 28 H 1.08995 * 110.90671 * 20.34571 * 15 12 11 29 29 H 1.09000 * 110.90636 * 143.91548 * 15 12 11 30 30 H 1.08996 * 110.61860 * 81.47979 * 16 15 12 31 31 H 1.09003 * 110.61428 * 204.31858 * 16 15 12 32 32 H 1.08998 * 109.88027 * 214.17153 * 18 17 16 33 33 H 1.08998 * 109.88164 * 93.16914 * 18 17 16 34 34 H 1.08994 * 117.49991 * 214.97502 * 19 9 7 35 35 H 1.09005 * 117.49437 * 359.97438 * 19 9 7 36 36 H 1.09000 * 117.49953 * 359.97438 * 20 9 7 37 37 H 1.09002 * 117.49761 * 144.99616 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0844 -1.1941 0.0169 9 6 1.2512 -2.4990 -0.0255 10 6 0.8328 -2.9931 -1.4117 11 7 1.9145 -2.7337 -2.3711 12 6 1.4969 -3.0695 -3.7389 13 6 1.2816 -4.5780 -3.8766 14 8 0.1915 -4.9814 -3.0453 15 6 2.5455 -2.5759 -4.7653 16 6 1.9306 -1.2338 -5.2378 17 8 0.5105 -1.5032 -5.2690 18 6 0.2125 -2.3049 -4.1137 19 6 1.6302 -3.5541 1.0158 20 6 0.3090 -2.7932 1.1436 21 1 -0.4849 0.8369 -0.0737 22 1 -0.0677 -2.4667 -1.7285 23 1 0.6323 -4.0637 -1.3707 24 1 2.2273 -1.7762 -2.3133 25 1 1.0553 -4.8194 -4.9151 26 1 2.1860 -5.1036 -3.5702 27 1 -0.0024 -5.9280 -3.0829 28 1 3.5115 -2.4142 -4.2871 29 1 2.6368 -3.2762 -5.5955 30 1 2.1527 -0.4383 -4.5265 31 1 2.2965 -0.9725 -6.2307 32 1 -0.5841 -3.0110 -4.3479 33 1 -0.0920 -1.6640 -3.2863 34 1 1.5815 -4.6000 0.7132 35 1 2.4250 -3.3045 1.7188 36 1 0.2343 -2.0431 1.9309 37 1 -0.6091 -3.3386 0.9250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393894981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:35 Heat of formation + Delta-G solvation = -64.209949 kcal Electronic energy + Delta-G solvation = -18743.953478 eV Core-core repulsion = 15908.229205 eV Total energy + Delta-G solvation = -2835.724273 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68911 -36.82784 -36.21520 -33.83049 -31.88817 -30.56516 -28.53166 -25.49881 -25.26017 -24.14566 -22.19390 -20.91555 -19.23589 -18.97749 -17.09965 -16.21980 -15.98620 -15.59840 -14.95713 -14.59331 -14.38464 -13.89805 -13.65232 -13.24629 -12.68261 -12.56764 -12.15636 -11.63973 -11.43848 -11.36108 -11.17722 -10.94956 -10.83189 -10.63245 -10.53613 -10.38802 -10.05100 -9.70572 -9.29147 -9.14155 -8.75333 -8.35211 -8.03001 -7.31678 -5.99559 -4.06251 3.27943 3.36813 3.39409 4.24617 4.38410 4.41242 4.79267 5.01840 5.19315 5.25658 5.32765 5.42427 5.51459 5.55075 5.72771 5.89347 5.94372 6.10530 6.11558 6.23898 6.35030 6.37970 6.59840 6.82029 6.88968 7.04211 7.11855 7.21437 7.26397 7.56057 7.63450 7.85745 7.90730 8.13124 8.43316 8.59129 8.98146 9.58650 11.07946 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.010507 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.629365 B = 2664.186683 C = 3551.532869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.489 4.489 8 H 0.060 0.940 9 C 0.044 3.956 10 C 0.101 3.899 11 N -0.659 5.659 12 C 0.085 3.915 13 C 0.099 3.901 14 O -0.557 6.557 15 C -0.145 4.145 16 C 0.043 3.957 17 O -0.385 6.385 18 C 0.019 3.981 19 C -0.209 4.209 20 C -0.158 4.158 21 H 0.258 0.742 22 H 0.028 0.972 23 H 0.070 0.930 24 H 0.353 0.647 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.368 0.632 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -7.026 -8.875 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.134 4.134 3 Si 0.711 3.289 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.044 3.956 10 C -0.027 4.027 11 N -0.293 5.293 12 C -0.008 4.008 13 C 0.021 3.979 14 O -0.362 6.362 15 C -0.183 4.183 16 C -0.033 4.033 17 O -0.304 6.304 18 C -0.059 4.059 19 C -0.246 4.246 20 C -0.196 4.196 21 H 0.068 0.932 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.176 0.824 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.214 0.786 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.656 -6.769 -8.703 11.342 hybrid contribution -0.091 1.064 -0.114 1.074 sum 2.565 -5.706 -8.817 10.811 Atomic orbital electron populations 1.70019 1.05747 1.26523 1.49124 1.25010 0.94775 0.98693 0.94940 0.86727 0.80049 0.83981 0.78128 1.20697 1.21352 1.19824 1.20455 0.92470 0.88747 1.51044 0.92210 1.18909 0.97388 0.92839 0.86484 1.21624 0.90807 0.98903 0.91349 1.60771 1.37162 1.31036 1.00315 1.22253 0.92634 0.93780 0.92164 1.22115 0.89425 0.94160 0.92233 1.86713 1.52958 1.28654 1.67903 1.23149 0.99623 0.97349 0.98188 1.23566 0.81651 0.96659 1.01452 1.88846 1.23676 1.72141 1.45751 1.24093 0.98766 0.94361 0.88717 1.22973 0.99262 0.95747 1.06607 1.22473 0.91240 1.01616 1.04301 0.93165 0.95351 0.91224 0.82410 0.94091 0.92890 0.78592 0.88942 0.90491 0.91945 0.89368 0.89991 0.90756 0.91930 0.91035 0.90254 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 12.74 55.43 0.71 -24.03 16 2 C 0.07 1.85 5.42 -17.82 -0.10 1.76 16 3 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.49 -13.02 7.24 -34.44 -0.25 -13.27 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.04 1.10 1.81 -155.66 -0.28 0.82 16 10 C 0.10 2.29 4.76 -3.82 -0.02 2.27 16 11 N -0.66 -13.33 6.09 -98.42 -0.60 -13.92 16 12 C 0.08 1.43 0.86 -130.08 -0.11 1.32 16 13 C 0.10 1.42 5.91 37.15 0.22 1.64 16 14 O -0.56 -8.31 9.77 -35.23 -0.34 -8.66 16 15 C -0.15 -2.04 6.30 -24.72 -0.16 -2.20 16 16 C 0.04 0.65 7.72 38.21 0.29 0.95 16 17 O -0.39 -7.02 11.54 -35.23 -0.41 -7.43 16 18 C 0.02 0.35 6.21 37.73 0.23 0.59 16 19 C -0.21 -4.76 9.88 -26.72 -0.26 -5.02 16 20 C -0.16 -3.86 9.28 -26.73 -0.25 -4.11 16 21 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 22 H 0.03 0.71 5.96 -51.92 -0.31 0.40 16 23 H 0.07 1.53 5.44 -51.93 -0.28 1.25 16 24 H 0.35 7.81 7.15 -39.29 -0.28 7.53 16 25 H 0.04 0.50 8.06 -51.93 -0.42 0.09 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.37 3.62 9.12 45.56 0.42 4.03 16 28 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 29 H 0.08 0.91 7.81 -51.93 -0.41 0.51 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 1.48 7.32 -51.93 -0.38 1.10 16 33 H 0.07 1.65 6.18 -51.93 -0.32 1.33 16 34 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 35 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 294.57 15.07 4.44 4.44 Total: -1.00 -29.59 294.57 -6.81 -36.40 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.90 Total: 12.60 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.68 Total: -15.25 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.11 Total: -37.96 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.75 Total: -16.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.59 -6.81 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.812 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds