Wall clock time and date at job start Mon Mar 30 2020 03:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48495 * 109.47155 * 270.00167 * 3 2 1 5 5 H 1.48501 * 109.46867 * 30.00262 * 3 2 1 6 6 H 1.48495 * 109.47001 * 149.99972 * 3 2 1 7 7 C 1.37875 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99834 * 181.07019 * 7 2 1 9 9 C 1.50698 * 119.99797 * 1.06842 * 7 2 1 10 10 C 1.53001 * 115.55366 * 84.68491 * 9 7 2 11 11 N 1.46902 * 109.47110 * 39.74865 * 10 9 7 12 12 C 1.46901 * 111.00124 * 185.77718 * 11 10 9 13 13 C 1.52995 * 110.43444 * 293.15792 * 12 11 10 14 14 O 1.42901 * 109.47175 * 64.77173 * 13 12 11 15 15 C 1.54812 * 110.59815 * 170.53686 * 12 11 10 16 16 C 1.55001 * 102.09002 * 262.14828 * 15 12 11 17 17 O 1.44571 * 103.58614 * 323.05535 * 16 15 12 18 18 C 1.43748 * 106.86912 * 39.88086 * 17 16 15 19 19 C 1.53008 * 117.51892 * 230.38046 * 9 7 2 20 20 C 1.53003 * 117.49917 * 299.00930 * 9 7 2 21 21 H 0.97002 * 119.99580 * 5.03052 * 1 2 3 22 22 H 1.09009 * 109.46896 * 279.75809 * 10 9 7 23 23 H 1.08996 * 109.47517 * 159.75767 * 10 9 7 24 24 H 1.00897 * 111.00262 * 309.73505 * 11 10 9 25 25 H 1.09000 * 109.47370 * 184.77372 * 13 12 11 26 26 H 1.09004 * 109.47541 * 304.76846 * 13 12 11 27 27 H 0.96703 * 113.99937 * 179.97438 * 14 13 12 28 28 H 1.08995 * 110.90671 * 20.34571 * 15 12 11 29 29 H 1.09000 * 110.90636 * 143.91548 * 15 12 11 30 30 H 1.08996 * 110.61860 * 81.47979 * 16 15 12 31 31 H 1.09003 * 110.61428 * 204.31858 * 16 15 12 32 32 H 1.08998 * 109.88027 * 214.17153 * 18 17 16 33 33 H 1.08998 * 109.88164 * 93.16914 * 18 17 16 34 34 H 1.08994 * 117.49991 * 214.97502 * 19 9 7 35 35 H 1.09005 * 117.49437 * 359.97438 * 19 9 7 36 36 H 1.09000 * 117.49953 * 359.97438 * 20 9 7 37 37 H 1.09002 * 117.49761 * 144.99616 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0844 -1.1941 0.0169 9 6 1.2512 -2.4990 -0.0255 10 6 0.8328 -2.9931 -1.4117 11 7 1.9145 -2.7337 -2.3711 12 6 1.4969 -3.0695 -3.7389 13 6 1.2816 -4.5780 -3.8766 14 8 0.1915 -4.9814 -3.0453 15 6 2.5455 -2.5759 -4.7653 16 6 1.9306 -1.2338 -5.2378 17 8 0.5105 -1.5032 -5.2690 18 6 0.2125 -2.3049 -4.1137 19 6 1.6302 -3.5541 1.0158 20 6 0.3090 -2.7932 1.1436 21 1 -0.4849 0.8369 -0.0737 22 1 -0.0677 -2.4667 -1.7285 23 1 0.6323 -4.0637 -1.3707 24 1 2.2273 -1.7762 -2.3133 25 1 1.0553 -4.8194 -4.9151 26 1 2.1860 -5.1036 -3.5702 27 1 -0.0024 -5.9280 -3.0829 28 1 3.5115 -2.4142 -4.2871 29 1 2.6368 -3.2762 -5.5955 30 1 2.1527 -0.4383 -4.5265 31 1 2.2965 -0.9725 -6.2307 32 1 -0.5841 -3.0110 -4.3479 33 1 -0.0920 -1.6640 -3.2863 34 1 1.5815 -4.6000 0.7132 35 1 2.4250 -3.3045 1.7188 36 1 0.2343 -2.0431 1.9309 37 1 -0.6091 -3.3386 0.9250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393894981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:35 Heat of formation + Delta-G solvation = -86.972756 kcal Electronic energy + Delta-G solvation = -18744.940547 eV Core-core repulsion = 15908.229205 eV Total energy + Delta-G solvation = -2836.711342 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04274 -38.53071 -37.55406 -35.28691 -33.96434 -31.94727 -29.87813 -27.54020 -26.54324 -25.85356 -23.43849 -22.82996 -20.95687 -20.52460 -18.30739 -17.80596 -17.49421 -17.09399 -16.63798 -16.36295 -15.88237 -15.47551 -15.04820 -14.79335 -14.37185 -13.93998 -13.69841 -13.26881 -13.07617 -12.96625 -12.83212 -12.59733 -12.43430 -12.34779 -11.99624 -11.94416 -11.76628 -11.15758 -10.91878 -10.71514 -10.53814 -10.34321 -9.91654 -9.00659 -8.07356 -6.18730 1.38685 1.41871 1.50376 2.42288 2.93306 3.20348 3.28589 3.44748 3.62419 3.74852 3.89261 4.16576 4.20308 4.33075 4.45806 4.55876 4.62884 4.68298 4.79750 4.83863 4.85171 4.93022 4.99367 5.03827 5.09884 5.24356 5.32149 5.39166 5.67667 5.68846 5.80804 5.81549 6.39768 6.56839 6.72777 6.91355 7.03442 7.48769 8.99539 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.019929 B = 0.010507 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.629365 B = 2664.186683 C = 3551.532869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.493 4.493 8 H 0.054 0.946 9 C 0.018 3.982 10 C 0.121 3.879 11 N -0.656 5.656 12 C 0.076 3.924 13 C 0.102 3.898 14 O -0.583 6.583 15 C -0.133 4.133 16 C 0.036 3.964 17 O -0.400 6.400 18 C 0.027 3.973 19 C -0.184 4.184 20 C -0.167 4.167 21 H 0.255 0.745 22 H -0.007 1.007 23 H 0.081 0.919 24 H 0.339 0.661 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.391 0.609 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.042 0.958 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.027 0.973 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -8.264 -10.313 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.531 4.531 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.007 4.007 11 N -0.287 5.287 12 C -0.016 4.016 13 C 0.025 3.975 14 O -0.391 6.391 15 C -0.171 4.171 16 C -0.040 4.040 17 O -0.319 6.319 18 C -0.051 4.051 19 C -0.221 4.221 20 C -0.205 4.205 21 H 0.064 0.936 22 H 0.011 0.989 23 H 0.098 0.902 24 H 0.159 0.841 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.241 0.759 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.190 -8.041 -10.149 13.609 hybrid contribution -0.574 1.426 0.322 1.571 sum 3.616 -6.615 -9.827 12.385 Atomic orbital electron populations 1.70145 1.07092 1.26899 1.50510 1.25642 0.95375 1.01628 0.94841 0.85799 0.78900 0.80221 0.78279 1.19971 1.21801 1.19161 1.20638 0.92251 0.89882 1.50309 0.92806 1.19148 0.97891 0.93265 0.87916 1.21350 0.90032 0.98700 0.90663 1.60794 1.36152 1.29758 1.02038 1.22547 0.92559 0.95720 0.90824 1.22115 0.89800 0.91856 0.93771 1.86625 1.53203 1.30959 1.68350 1.23162 0.98644 0.97061 0.98240 1.23806 0.80215 0.96941 1.03062 1.88828 1.25811 1.72206 1.45090 1.23889 1.00064 0.93648 0.87535 1.22962 0.97711 0.96467 1.04981 1.22355 0.92453 1.01883 1.03828 0.93576 0.98859 0.90159 0.84115 0.91238 0.91834 0.75948 0.88356 0.87132 0.93911 0.85877 0.89694 0.95450 0.89442 0.91018 0.92744 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.81 12.74 21.45 0.27 -52.54 16 2 C 0.03 1.37 5.42 84.65 0.46 1.83 16 3 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.49 -26.49 7.24 25.60 0.19 -26.31 16 8 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 9 C 0.02 0.92 1.81 -52.92 -0.10 0.82 16 10 C 0.12 5.51 4.76 86.30 0.41 5.92 16 11 N -0.66 -26.18 6.09 -465.29 -2.83 -29.02 16 12 C 0.08 2.45 0.86 4.51 0.00 2.45 16 13 C 0.10 2.62 5.91 71.98 0.43 3.04 16 14 O -0.58 -16.13 9.77 -148.98 -1.46 -17.58 16 15 C -0.13 -3.36 6.30 31.90 0.20 -3.16 16 16 C 0.04 1.02 7.72 72.67 0.56 1.58 16 17 O -0.40 -14.30 11.54 -148.98 -1.72 -16.02 16 18 C 0.03 1.02 6.21 72.35 0.45 1.47 16 19 C -0.18 -8.18 9.88 30.60 0.30 -7.87 16 20 C -0.17 -8.25 9.28 30.60 0.28 -7.97 16 21 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 22 H -0.01 -0.35 5.96 -2.38 -0.01 -0.36 16 23 H 0.08 3.45 5.44 -2.39 -0.01 3.44 16 24 H 0.34 15.11 7.15 -89.70 -0.64 14.46 16 25 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.39 6.60 9.12 -74.05 -0.68 5.93 16 28 H 0.10 2.40 8.06 -2.39 -0.02 2.38 16 29 H 0.11 2.09 7.81 -2.39 -0.02 2.07 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.08 3.06 7.32 -2.39 -0.02 3.04 16 33 H 0.03 1.28 6.18 -2.39 -0.01 1.27 16 34 H 0.09 3.44 8.08 -2.39 -0.02 3.42 16 35 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 36 H 0.05 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -64.70 294.57 -0.76 -65.47 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.24 Total: 32.40 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.19 Total: -28.19 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.56 Total: -81.56 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -3.17 Total: -33.60 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.70 -0.76 -65.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393894981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.506 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds