Wall clock time and date at job start Mon Mar 30 2020 03:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47152 * 64.99954 * 12 11 10 14 14 C 1.46847 * 110.99826 * 66.04527 * 13 12 11 15 15 C 1.53041 * 109.52296 * 185.83933 * 14 13 12 16 16 C 1.53116 * 109.27851 * 300.82259 * 15 14 13 17 17 C 1.53118 * 109.16402 * 57.65300 * 16 15 14 18 18 C 1.46845 * 111.00213 * 190.25289 * 13 12 11 19 19 H 1.09002 * 109.46381 * 294.17818 * 18 13 12 20 20 C 1.50702 * 109.46015 * 54.14594 * 18 13 12 21 21 O 1.20764 * 119.99911 * 239.99722 * 20 18 13 22 22 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08997 * 109.47171 * 299.99768 * 11 10 9 26 26 H 1.08997 * 109.47442 * 59.99964 * 11 10 9 27 27 H 1.09004 * 109.47113 * 184.99738 * 12 11 10 28 28 H 1.08993 * 109.47646 * 305.00069 * 12 11 10 29 29 H 1.09004 * 109.46226 * 305.85427 * 14 13 12 30 30 H 1.08997 * 109.46760 * 65.83377 * 14 13 12 31 31 H 1.09002 * 109.50183 * 60.76140 * 15 14 13 32 32 H 1.09000 * 109.50567 * 180.83976 * 15 14 13 33 33 H 1.08996 * 109.52098 * 177.56153 * 16 15 14 34 34 H 1.09001 * 109.52005 * 297.74832 * 16 15 14 35 35 H 1.08996 * 109.50593 * 62.28498 * 17 16 15 36 36 H 1.08999 * 109.50739 * 182.40897 * 17 16 15 37 37 H 1.07996 * 120.00173 * 59.99713 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.4124 -2.6541 -0.0022 12 6 5.8069 -4.1324 -0.0028 13 7 5.3676 -4.7560 -1.2583 14 6 6.0962 -4.1995 -2.4054 15 6 5.5141 -4.7634 -3.7035 16 6 5.6344 -6.2898 -3.6903 17 6 4.9083 -6.8406 -2.4599 18 6 5.5081 -6.2164 -1.1979 19 1 6.5643 -6.4772 -1.1304 20 6 4.7831 -6.7408 0.0148 21 8 5.3897 -7.3453 0.8664 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6800 -0.8912 25 1 5.8152 -2.1699 -0.8918 26 1 5.8152 -2.1713 0.8881 27 1 6.8897 -4.2195 0.0867 28 1 5.3311 -4.6358 0.8387 29 1 5.9991 -3.1138 -2.4053 30 1 7.1496 -4.4698 -2.3324 31 1 4.4641 -4.4818 -3.7840 32 1 6.0648 -4.3617 -4.5541 33 1 5.1818 -6.6986 -4.5937 34 1 6.6864 -6.5719 -3.6491 35 1 3.8489 -6.5917 -2.5208 36 1 5.0267 -7.9235 -2.4218 37 1 3.7213 -6.5760 0.1224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395386126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:59 Heat of formation + Delta-G solvation = -80.767421 kcal Electronic energy + Delta-G solvation = -17761.523351 eV Core-core repulsion = 14925.081093 eV Total energy + Delta-G solvation = -2836.442258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.04275 -38.15940 -36.77283 -33.85305 -32.53595 -31.46024 -29.22903 -27.37355 -25.00840 -24.15296 -21.84379 -21.38906 -20.89443 -19.90619 -16.92057 -16.81960 -15.94317 -15.62491 -15.33276 -14.98949 -14.59513 -14.27221 -14.11898 -14.03765 -13.28063 -13.12467 -13.00694 -12.59827 -12.45715 -12.16259 -11.55915 -11.33347 -11.06586 -10.93703 -10.87036 -10.71542 -10.70145 -10.23081 -9.84480 -9.53824 -9.15171 -8.81655 -8.44169 -8.28239 -6.09591 -4.07994 1.86820 3.25099 3.32315 3.33505 3.77922 4.21810 4.36766 4.57745 4.68569 4.77739 4.87056 5.05411 5.19094 5.21787 5.33737 5.35567 5.43138 5.56869 5.62270 5.68392 5.75453 5.77951 5.85862 5.89964 6.04219 6.09889 6.12057 6.32856 6.61838 6.92332 7.01775 7.04874 7.36253 7.62275 8.05709 8.69884 9.03176 9.50152 11.03505 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.005576 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.858990 B = 5019.984189 C = 5266.510318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.364 6.364 11 C 0.063 3.937 12 C 0.055 3.945 13 N -0.508 5.508 14 C 0.056 3.944 15 C -0.119 4.119 16 C -0.117 4.117 17 C -0.109 4.109 18 C 0.020 3.980 19 H 0.056 0.944 20 C 0.361 3.639 21 O -0.468 6.468 22 H 0.266 0.734 23 H 0.000 1.000 24 H -0.004 1.004 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.389 -10.374 -6.304 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.283 6.283 11 C -0.015 4.015 12 C -0.072 4.072 13 N -0.235 5.235 14 C -0.072 4.072 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.089 4.089 19 H 0.074 0.926 20 C 0.216 3.784 21 O -0.338 6.338 22 H 0.076 0.924 23 H 0.018 0.982 24 H 0.014 0.986 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.936 -10.648 -5.884 17.758 hybrid contribution 1.416 1.171 0.025 1.837 sum 14.352 -9.477 -5.859 18.169 Atomic orbital electron populations 1.69874 1.06031 1.27001 1.50562 1.24762 0.94780 0.98673 0.94764 0.86870 0.80346 0.83919 0.78707 1.19981 1.20834 1.19197 1.20885 0.88266 0.95284 1.50843 0.89876 1.20587 0.96219 0.79839 0.94081 1.87997 1.16597 1.28836 1.94889 1.22325 0.85920 0.94101 0.99139 1.22223 0.97392 0.95687 0.91919 1.61843 1.57267 1.01371 1.03047 1.22163 0.94334 1.00491 0.90201 1.21607 1.02919 0.94908 0.96231 1.21532 1.00064 0.96181 0.97662 1.21525 1.01666 0.98946 0.92507 1.22593 0.99288 0.90246 0.96796 0.92572 1.26112 0.95734 0.73089 0.83448 1.90386 1.71942 1.31411 1.40031 0.92423 0.98244 0.98589 0.94129 0.93958 0.93781 0.90291 0.89713 0.95256 0.90185 0.91559 0.91409 0.92474 0.89721 0.91440 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.51 -15.24 9.99 -34.44 -0.34 -15.58 16 8 H 0.08 2.69 8.06 -52.48 -0.42 2.27 16 9 C 0.17 4.24 4.76 36.01 0.17 4.41 16 10 O -0.36 -8.34 10.27 -35.23 -0.36 -8.70 16 11 C 0.06 1.09 6.00 37.16 0.22 1.31 16 12 C 0.06 0.81 5.14 -3.82 -0.02 0.79 16 13 N -0.51 -7.07 4.43 -228.07 -1.01 -8.08 16 14 C 0.06 0.68 5.30 -3.83 -0.02 0.66 16 15 C -0.12 -1.26 6.09 -26.65 -0.16 -1.43 16 16 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 17 C -0.11 -1.08 5.36 -26.65 -0.14 -1.22 16 18 C 0.02 0.24 2.34 -68.87 -0.16 0.08 16 19 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 20 C 0.36 4.66 8.78 36.01 0.32 4.98 16 21 O -0.47 -7.31 17.90 6.00 0.11 -7.20 16 22 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 24 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 25 H 0.04 0.65 6.23 -51.93 -0.32 0.33 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.08 1.22 6.55 -51.93 -0.34 0.88 16 29 H 0.08 1.11 6.13 -51.93 -0.32 0.79 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -32.56 299.49 -7.03 -39.59 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -5.99 Total: -4.76 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -0.40 Total: -5.23 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.24 Total: -34.89 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.25 Total: -15.90 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.56 -7.03 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395386126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.176 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds