Wall clock time and date at job start Mon Mar 30 2020 03:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 O 1.42905 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47152 * 64.99954 * 12 11 10 14 14 C 1.46847 * 110.99826 * 66.04527 * 13 12 11 15 15 C 1.53041 * 109.52296 * 185.83933 * 14 13 12 16 16 C 1.53116 * 109.27851 * 300.82259 * 15 14 13 17 17 C 1.53118 * 109.16402 * 57.65300 * 16 15 14 18 18 C 1.46845 * 111.00213 * 190.25289 * 13 12 11 19 19 H 1.09002 * 109.46381 * 294.17818 * 18 13 12 20 20 C 1.50702 * 109.46015 * 54.14594 * 18 13 12 21 21 O 1.20764 * 119.99911 * 239.99722 * 20 18 13 22 22 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08997 * 109.47171 * 299.99768 * 11 10 9 26 26 H 1.08997 * 109.47442 * 59.99964 * 11 10 9 27 27 H 1.09004 * 109.47113 * 184.99738 * 12 11 10 28 28 H 1.08993 * 109.47646 * 305.00069 * 12 11 10 29 29 H 1.09004 * 109.46226 * 305.85427 * 14 13 12 30 30 H 1.08997 * 109.46760 * 65.83377 * 14 13 12 31 31 H 1.09002 * 109.50183 * 60.76140 * 15 14 13 32 32 H 1.09000 * 109.50567 * 180.83976 * 15 14 13 33 33 H 1.08996 * 109.52098 * 177.56153 * 16 15 14 34 34 H 1.09001 * 109.52005 * 297.74832 * 16 15 14 35 35 H 1.08996 * 109.50593 * 62.28498 * 17 16 15 36 36 H 1.08999 * 109.50739 * 182.40897 * 17 16 15 37 37 H 1.07996 * 120.00173 * 59.99713 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.4124 -2.6541 -0.0022 12 6 5.8069 -4.1324 -0.0028 13 7 5.3676 -4.7560 -1.2583 14 6 6.0962 -4.1995 -2.4054 15 6 5.5141 -4.7634 -3.7035 16 6 5.6344 -6.2898 -3.6903 17 6 4.9083 -6.8406 -2.4599 18 6 5.5081 -6.2164 -1.1979 19 1 6.5643 -6.4772 -1.1304 20 6 4.7831 -6.7408 0.0148 21 8 5.3897 -7.3453 0.8664 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8746 -0.6800 -0.8912 25 1 5.8152 -2.1699 -0.8918 26 1 5.8152 -2.1713 0.8881 27 1 6.8897 -4.2195 0.0867 28 1 5.3311 -4.6358 0.8387 29 1 5.9991 -3.1138 -2.4053 30 1 7.1496 -4.4698 -2.3324 31 1 4.4641 -4.4818 -3.7840 32 1 6.0648 -4.3617 -4.5541 33 1 5.1818 -6.6986 -4.5937 34 1 6.6864 -6.5719 -3.6491 35 1 3.8489 -6.5917 -2.5208 36 1 5.0267 -7.9235 -2.4218 37 1 3.7213 -6.5760 0.1224 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395386126.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:58 Heat of formation + Delta-G solvation = -104.150208 kcal Electronic energy + Delta-G solvation = -17762.537305 eV Core-core repulsion = 14925.081093 eV Total energy + Delta-G solvation = -2837.456212 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08190 -39.30450 -38.34226 -35.13738 -34.50628 -32.40250 -30.78729 -29.09972 -26.04503 -25.13570 -23.93357 -22.53058 -21.91075 -20.80722 -19.01260 -17.97275 -17.43056 -16.93349 -16.59404 -16.33248 -15.99224 -15.77926 -15.16328 -15.02446 -14.71351 -14.36450 -14.27190 -14.15981 -13.67036 -13.44964 -13.06353 -12.79136 -12.48334 -12.24440 -12.22304 -11.86271 -11.80692 -11.59021 -11.36966 -11.14996 -10.89555 -10.57676 -10.26932 -9.30337 -8.34209 -6.41296 0.80815 1.34446 1.37474 1.48094 2.31287 2.77428 2.98435 3.09698 3.22990 3.82880 3.86554 3.97659 4.05585 4.21304 4.29289 4.36278 4.45212 4.49535 4.53647 4.62902 4.66383 4.77070 4.83779 4.89837 4.99677 5.04088 5.07814 5.22795 5.28906 5.47624 5.49719 5.88277 5.97055 6.07407 6.32553 6.63055 6.81432 7.23135 8.82902 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027775 B = 0.005576 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.858990 B = 5019.984189 C = 5266.510318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.540 4.540 8 H 0.031 0.969 9 C 0.180 3.820 10 O -0.390 6.390 11 C 0.056 3.944 12 C 0.060 3.940 13 N -0.530 5.530 14 C 0.054 3.946 15 C -0.118 4.118 16 C -0.112 4.112 17 C -0.108 4.108 18 C 0.026 3.974 19 H 0.062 0.938 20 C 0.366 3.634 21 O -0.496 6.496 22 H 0.272 0.728 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.801 -9.628 -7.197 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.578 4.578 8 H 0.049 0.951 9 C 0.104 3.896 10 O -0.309 6.309 11 C -0.021 4.021 12 C -0.067 4.067 13 N -0.258 5.258 14 C -0.073 4.073 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.083 4.083 19 H 0.080 0.920 20 C 0.223 3.777 21 O -0.368 6.368 22 H 0.081 0.919 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.360 -9.923 -6.789 19.506 hybrid contribution 0.614 0.834 0.295 1.077 sum 15.974 -9.089 -6.494 19.492 Atomic orbital electron populations 1.70035 1.08229 1.28653 1.51333 1.25817 0.95764 1.03306 0.93622 0.85633 0.79412 0.77680 0.79752 1.18352 1.20010 1.17015 1.21154 0.90987 0.93780 1.51893 0.95076 1.20282 0.93274 0.81338 0.94722 1.87952 1.20377 1.27473 1.95113 1.22647 0.82752 0.96312 1.00428 1.22142 0.98654 0.93905 0.92040 1.61816 1.58313 1.02450 1.03226 1.22212 0.95231 0.99757 0.90109 1.21604 1.01619 0.96167 0.96154 1.21519 1.00813 0.94901 0.97677 1.21563 1.01050 0.99942 0.91974 1.22566 0.99517 0.89193 0.97019 0.92011 1.26342 0.96035 0.72007 0.83300 1.90377 1.72452 1.32895 1.41059 0.91900 0.97439 0.97327 0.92638 0.92676 0.91193 0.91690 0.90969 0.93498 0.92490 0.89741 0.89960 0.91212 0.90734 0.89657 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.95 43.24 27.47 68.60 1.88 45.13 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.54 -32.88 9.99 25.60 0.26 -32.62 16 8 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 9 C 0.18 8.96 4.76 71.24 0.34 9.30 16 10 O -0.39 -17.86 10.27 -148.98 -1.53 -19.39 16 11 C 0.06 1.83 6.00 71.98 0.43 2.27 16 12 C 0.06 1.68 5.14 86.30 0.44 2.12 16 13 N -0.53 -14.14 4.43 -875.48 -3.88 -18.02 16 14 C 0.05 1.21 5.30 86.33 0.46 1.67 16 15 C -0.12 -2.29 6.09 30.65 0.19 -2.10 16 16 C -0.11 -1.76 6.00 30.67 0.18 -1.58 16 17 C -0.11 -1.96 5.36 30.65 0.16 -1.80 16 18 C 0.03 0.59 2.34 44.19 0.10 0.69 16 19 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 20 C 0.37 9.36 8.78 71.24 0.63 9.98 16 21 O -0.50 -15.39 17.90 -1.46 -0.03 -15.41 16 22 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 23 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 24 H 0.01 0.42 7.57 -2.39 -0.02 0.41 16 25 H 0.06 1.67 6.23 -2.39 -0.01 1.65 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.60 8.12 -2.38 -0.02 1.58 16 28 H 0.06 1.98 6.55 -2.39 -0.02 1.97 16 29 H 0.07 1.78 6.13 -2.38 -0.01 1.77 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -71.65 299.49 1.37 -70.27 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.97 Total: 7.36 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 3.65 Total: -10.87 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -3.58 Total: -77.10 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.56 Total: -34.80 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Total: -71.65 1.37 -70.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395386126.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.876 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds