Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48499 * 109.46945 * 269.99801 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99722 * 3 2 1 6 6 H 1.48495 * 109.47036 * 150.00045 * 3 2 1 7 7 C 1.37875 * 119.99574 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00434 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00069 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47217 * 179.97438 * 11 10 9 13 13 N 1.46908 * 109.47284 * 67.59550 * 12 11 10 14 14 C 1.46847 * 110.98998 * 286.74691 * 13 12 11 15 15 C 1.53039 * 109.51029 * 174.14891 * 14 13 12 16 16 C 1.53115 * 109.28046 * 59.18434 * 15 14 13 17 17 C 1.53118 * 109.16147 * 302.34359 * 16 15 14 18 18 C 1.46841 * 111.00077 * 162.54141 * 13 12 11 19 19 H 1.08999 * 109.46370 * 65.83216 * 18 13 12 20 20 C 1.50701 * 109.46200 * 305.85647 * 18 13 12 21 21 O 1.20760 * 119.99862 * 124.98231 * 20 18 13 22 22 H 0.96999 * 120.00035 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46892 * 59.99518 * 9 7 2 24 24 H 1.09001 * 109.46562 * 299.99839 * 9 7 2 25 25 H 1.09000 * 109.47208 * 59.99364 * 11 10 9 26 26 H 1.09004 * 109.47120 * 299.99276 * 11 10 9 27 27 H 1.09001 * 109.47122 * 307.59707 * 12 11 10 28 28 H 1.09000 * 109.47397 * 187.59244 * 12 11 10 29 29 H 1.09000 * 109.45978 * 54.13721 * 14 13 12 30 30 H 1.08998 * 109.47085 * 294.16127 * 14 13 12 31 31 H 1.08996 * 109.50334 * 299.23854 * 15 14 13 32 32 H 1.09001 * 109.53437 * 179.14710 * 15 14 13 33 33 H 1.09002 * 109.52465 * 182.43815 * 16 15 14 34 34 H 1.09000 * 109.52150 * 62.24804 * 16 15 14 35 35 H 1.09003 * 109.50220 * 297.71839 * 17 16 15 36 36 H 1.08994 * 109.50356 * 177.59358 * 17 16 15 37 37 H 1.08000 * 120.00418 * 304.70262 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8754 0.0013 12 6 2.6479 -5.9562 0.0020 13 7 3.3665 -5.9286 1.2830 14 6 4.2533 -4.7609 1.3635 15 6 4.8723 -4.6846 2.7611 16 6 5.6611 -5.9680 3.0354 17 6 4.7255 -7.1722 2.8974 18 6 4.1108 -7.1764 1.4959 19 1 4.9032 -7.2581 0.7519 20 6 3.1737 -8.3490 1.3622 21 8 3.4234 -9.2354 0.5810 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9457 -4.9826 -0.8893 26 1 0.9439 -4.9824 0.8907 27 1 3.3485 -5.7691 -0.8118 28 1 2.1856 -6.9339 -0.1342 29 1 3.6791 -3.8548 1.1706 30 1 5.0451 -4.8541 0.6202 31 1 4.0819 -4.5775 3.5038 32 1 5.5424 -3.8267 2.8166 33 1 6.0678 -5.9366 4.0462 34 1 6.4758 -6.0554 2.3165 35 1 3.9327 -7.1042 3.6423 36 1 5.2909 -8.0916 3.0495 37 1 2.2812 -8.3990 1.9682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395386127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = -87.902406 kcal Electronic energy + Delta-G solvation = -17791.280026 eV Core-core repulsion = 14954.528372 eV Total energy + Delta-G solvation = -2836.751655 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01506 -38.15533 -36.63948 -33.72920 -32.61928 -31.23668 -29.02541 -26.89311 -24.94241 -23.73828 -22.28570 -21.54657 -20.77050 -19.81880 -16.83689 -16.44619 -15.93951 -15.62559 -15.12688 -14.88679 -14.68900 -14.31012 -13.99616 -13.83398 -13.33351 -13.09987 -12.94330 -12.40137 -12.01139 -11.72535 -11.32249 -11.24950 -11.02016 -10.89093 -10.82092 -10.76784 -10.57840 -10.25899 -9.83643 -9.57238 -9.10711 -8.80793 -8.25062 -8.14378 -6.12713 -4.14657 1.77455 3.28667 3.34098 3.38559 3.88810 4.15961 4.32321 4.74657 4.77782 4.89678 4.98156 5.15015 5.24085 5.27396 5.42504 5.52904 5.61943 5.67527 5.74421 5.87020 5.93519 5.98877 6.01863 6.07168 6.16904 6.29168 6.50003 6.74250 7.03981 7.14294 7.19155 7.35828 7.43197 7.76502 8.13386 8.54029 8.98196 9.50362 10.98748 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032926 B = 0.005409 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.195319 B = 5175.508994 C = 5825.599713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.195 3.805 10 O -0.392 6.392 11 C 0.068 3.932 12 C 0.055 3.945 13 N -0.517 5.517 14 C 0.044 3.956 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.104 4.104 18 C 0.014 3.986 19 H 0.058 0.942 20 C 0.358 3.642 21 O -0.466 6.466 22 H 0.264 0.736 23 H 0.004 0.996 24 H 0.007 0.993 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.128 0.872 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -12.795 5.721 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.313 6.313 11 C -0.010 4.010 12 C -0.073 4.073 13 N -0.244 5.244 14 C -0.082 4.082 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.142 4.142 18 C -0.095 4.095 19 H 0.076 0.924 20 C 0.214 3.786 21 O -0.336 6.336 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.090 -13.100 5.660 15.935 hybrid contribution 0.608 0.876 -0.654 1.251 sum 7.698 -12.224 5.006 15.288 Atomic orbital electron populations 1.69960 1.06104 1.27151 1.50462 1.24936 0.94943 0.99390 0.95145 0.86364 0.79680 0.82406 0.78207 1.20530 1.21089 1.19630 1.21035 0.93930 0.89383 1.50920 0.91645 1.20196 0.88788 0.83507 0.95438 1.87754 1.35415 1.13164 1.94922 1.22233 0.94016 0.85114 0.99628 1.22235 0.96693 0.98071 0.90301 1.62036 1.28541 1.00896 1.32915 1.22575 0.95071 0.95079 0.95486 1.21614 0.99371 0.96698 0.97837 1.21572 0.97695 0.94985 1.01423 1.21479 0.99258 0.98653 0.94832 1.22623 0.95979 0.91542 0.99374 0.92361 1.26074 0.88537 0.84009 0.79995 1.90399 1.73001 1.38179 1.32037 0.92655 0.97830 0.97555 0.93978 0.93271 0.93616 0.91051 0.85420 0.95505 0.90921 0.91424 0.91695 0.92412 0.90280 0.91684 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.51 -14.66 9.43 -34.44 -0.32 -14.98 16 8 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.19 5.16 5.69 36.01 0.20 5.36 16 10 O -0.39 -8.85 7.32 -35.23 -0.26 -9.11 16 11 C 0.07 1.22 6.23 37.16 0.23 1.45 16 12 C 0.05 0.82 5.36 -3.82 -0.02 0.80 16 13 N -0.52 -7.36 4.43 -228.07 -1.01 -8.37 16 14 C 0.04 0.69 5.18 -3.83 -0.02 0.67 16 15 C -0.12 -1.50 6.09 -26.65 -0.16 -1.67 16 16 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 17 C -0.10 -1.04 5.36 -26.65 -0.14 -1.18 16 18 C 0.01 0.17 2.34 -68.88 -0.16 0.01 16 19 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 20 C 0.36 4.09 8.71 36.01 0.31 4.41 16 21 O -0.47 -6.78 17.90 6.00 0.11 -6.67 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.73 8.03 -51.93 -0.42 0.31 16 28 H 0.07 0.94 6.35 -51.93 -0.33 0.61 16 29 H 0.13 2.46 5.12 -51.93 -0.27 2.19 16 30 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -30.62 301.01 -7.30 -37.92 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -6.05 Total: -3.97 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.34 Total: -5.01 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.27 Total: -34.11 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.15 Total: -15.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.62 -7.30 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395386127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.986 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds