Wall clock time and date at job start Mon Mar 30 2020 03:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00135 * 2 1 4 4 H 1.48499 * 109.46945 * 269.99801 * 3 2 1 5 5 H 1.48500 * 109.46904 * 29.99722 * 3 2 1 6 6 H 1.48495 * 109.47036 * 150.00045 * 3 2 1 7 7 C 1.37875 * 119.99574 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00434 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.42896 * 114.00069 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47217 * 179.97438 * 11 10 9 13 13 N 1.46908 * 109.47284 * 67.59550 * 12 11 10 14 14 C 1.46847 * 110.98998 * 286.74691 * 13 12 11 15 15 C 1.53039 * 109.51029 * 174.14891 * 14 13 12 16 16 C 1.53115 * 109.28046 * 59.18434 * 15 14 13 17 17 C 1.53118 * 109.16147 * 302.34359 * 16 15 14 18 18 C 1.46841 * 111.00077 * 162.54141 * 13 12 11 19 19 H 1.08999 * 109.46370 * 65.83216 * 18 13 12 20 20 C 1.50701 * 109.46200 * 305.85647 * 18 13 12 21 21 O 1.20760 * 119.99862 * 124.98231 * 20 18 13 22 22 H 0.96999 * 120.00035 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46892 * 59.99518 * 9 7 2 24 24 H 1.09001 * 109.46562 * 299.99839 * 9 7 2 25 25 H 1.09000 * 109.47208 * 59.99364 * 11 10 9 26 26 H 1.09004 * 109.47120 * 299.99276 * 11 10 9 27 27 H 1.09001 * 109.47122 * 307.59707 * 12 11 10 28 28 H 1.09000 * 109.47397 * 187.59244 * 12 11 10 29 29 H 1.09000 * 109.45978 * 54.13721 * 14 13 12 30 30 H 1.08998 * 109.47085 * 294.16127 * 14 13 12 31 31 H 1.08996 * 109.50334 * 299.23854 * 15 14 13 32 32 H 1.09001 * 109.53437 * 179.14710 * 15 14 13 33 33 H 1.09002 * 109.52465 * 182.43815 * 16 15 14 34 34 H 1.09000 * 109.52150 * 62.24804 * 16 15 14 35 35 H 1.09003 * 109.50220 * 297.71839 * 17 16 15 36 36 H 1.08994 * 109.50356 * 177.59358 * 17 16 15 37 37 H 1.08000 * 120.00418 * 304.70262 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0017 11 6 1.5649 -4.8754 0.0013 12 6 2.6479 -5.9562 0.0020 13 7 3.3665 -5.9286 1.2830 14 6 4.2533 -4.7609 1.3635 15 6 4.8723 -4.6846 2.7611 16 6 5.6611 -5.9680 3.0354 17 6 4.7255 -7.1722 2.8974 18 6 4.1108 -7.1764 1.4959 19 1 4.9032 -7.2581 0.7519 20 6 3.1737 -8.3490 1.3622 21 8 3.4234 -9.2354 0.5810 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 0.9457 -4.9826 -0.8893 26 1 0.9439 -4.9824 0.8907 27 1 3.3485 -5.7691 -0.8118 28 1 2.1856 -6.9339 -0.1342 29 1 3.6791 -3.8548 1.1706 30 1 5.0451 -4.8541 0.6202 31 1 4.0819 -4.5775 3.5038 32 1 5.5424 -3.8267 2.8166 33 1 6.0678 -5.9366 4.0462 34 1 6.4758 -6.0554 2.3165 35 1 3.9327 -7.1042 3.6423 36 1 5.2909 -8.0916 3.0495 37 1 2.2812 -8.3990 1.9682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395386127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:00 Heat of formation + Delta-G solvation = -108.341726 kcal Electronic energy + Delta-G solvation = -17792.166342 eV Core-core repulsion = 14954.528372 eV Total energy + Delta-G solvation = -2837.637970 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.06427 -39.32562 -38.26045 -35.17627 -34.47350 -32.28332 -30.51742 -28.82830 -25.97878 -25.00182 -24.27906 -22.76440 -21.82825 -20.80880 -18.60376 -17.97617 -17.40953 -16.99051 -16.40968 -16.29125 -16.08864 -15.79235 -15.20352 -15.04495 -14.74179 -14.27378 -14.19313 -13.90347 -13.28797 -13.23791 -13.01107 -12.76697 -12.54671 -12.47661 -12.22463 -12.06503 -11.85307 -11.58306 -11.34783 -11.07898 -10.77585 -10.53712 -10.11750 -9.41510 -8.29878 -6.41528 0.84396 1.41360 1.43453 1.55388 2.35617 2.76737 3.04554 3.17514 3.25421 3.88106 3.90338 3.94425 4.07250 4.28455 4.33138 4.43245 4.48572 4.53327 4.63741 4.68036 4.76903 4.89348 4.93578 5.00738 5.03869 5.12092 5.22319 5.24305 5.45796 5.51444 5.56976 5.93407 5.98723 6.02050 6.37053 6.55509 6.84623 7.30269 8.82402 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.032926 B = 0.005409 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.195319 B = 5175.508994 C = 5825.599713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.210 3.790 10 O -0.397 6.397 11 C 0.061 3.939 12 C 0.063 3.937 13 N -0.518 5.518 14 C 0.047 3.953 15 C -0.114 4.114 16 C -0.114 4.114 17 C -0.101 4.101 18 C 0.013 3.987 19 H 0.046 0.954 20 C 0.369 3.631 21 O -0.497 6.497 22 H 0.270 0.730 23 H -0.018 1.018 24 H -0.013 1.013 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.035 0.965 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -13.305 6.782 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.803 3.197 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.135 3.865 10 O -0.317 6.317 11 C -0.017 4.017 12 C -0.065 4.065 13 N -0.245 5.245 14 C -0.080 4.080 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.138 4.138 18 C -0.096 4.096 19 H 0.064 0.936 20 C 0.226 3.774 21 O -0.369 6.369 22 H 0.078 0.922 23 H 0.000 1.000 24 H 0.004 0.996 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.091 -13.632 6.729 17.221 hybrid contribution 0.273 0.965 -0.987 1.407 sum 8.364 -12.666 5.742 16.228 Atomic orbital electron populations 1.70069 1.07750 1.28525 1.50696 1.25911 0.95875 1.03254 0.94073 0.85236 0.78498 0.77339 0.78677 1.19594 1.20087 1.18716 1.21361 0.94018 0.90757 1.51886 0.91967 1.19790 0.88650 0.84713 0.93361 1.87787 1.34851 1.14148 1.94927 1.22511 0.95335 0.83758 1.00062 1.22149 0.95840 0.97867 0.90610 1.61999 1.28743 1.01653 1.32059 1.22399 0.94427 0.93994 0.97181 1.21580 0.99450 0.98435 0.95747 1.21546 0.97354 0.93573 1.02669 1.21517 0.99598 0.99321 0.93413 1.22726 0.95768 0.90525 1.00558 0.93605 1.26405 0.88831 0.82801 0.79347 1.90408 1.73669 1.39270 1.33548 0.92154 0.99980 0.99553 0.93417 0.92915 0.94709 0.88591 0.89451 0.96212 0.91352 0.91400 0.89509 0.92476 0.89202 0.89608 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.54 -31.63 9.43 25.60 0.24 -31.39 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.54 5.69 71.24 0.41 11.95 16 10 O -0.40 -18.54 7.32 -148.98 -1.09 -19.63 16 11 C 0.06 2.19 6.23 71.98 0.45 2.64 16 12 C 0.06 1.87 5.36 86.30 0.46 2.33 16 13 N -0.52 -14.29 4.43 -875.49 -3.88 -18.17 16 14 C 0.05 1.47 5.18 86.33 0.45 1.92 16 15 C -0.11 -2.83 6.09 30.65 0.19 -2.64 16 16 C -0.11 -2.10 6.00 30.67 0.18 -1.91 16 17 C -0.10 -1.71 5.36 30.65 0.16 -1.54 16 18 C 0.01 0.29 2.34 44.19 0.10 0.40 16 19 H 0.05 1.14 8.12 -2.39 -0.02 1.13 16 20 C 0.37 7.46 8.71 71.24 0.62 8.09 16 21 O -0.50 -13.50 17.90 -1.45 -0.03 -13.52 16 22 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 23 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 24 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.11 8.03 -2.39 -0.02 1.09 16 28 H 0.10 2.38 6.35 -2.39 -0.02 2.36 16 29 H 0.09 3.49 5.12 -2.39 -0.01 3.48 16 30 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -66.75 301.01 2.07 -64.68 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.02 Total: 5.32 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 3.73 Total: -9.28 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -3.59 Total: -73.43 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -1.12 Total: -33.15 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -66.75 2.07 -64.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395386127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.661 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds