Wall clock time and date at job start Mon Mar 30 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47178 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47163 * 60.00307 * 3 2 1 7 7 C 1.37885 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.47212 * 120.01033 * 269.72355 * 13 12 11 15 15 C 1.53633 * 108.30355 * 109.91561 * 14 13 12 16 16 O 1.41711 * 110.50563 * 84.48330 * 15 14 13 17 17 C 1.41757 * 118.91958 * 291.43064 * 16 15 14 18 18 C 1.53221 * 110.37711 * 68.23670 * 17 16 15 19 19 C 1.33818 * 120.00967 * 90.00343 * 13 12 11 20 20 O 1.21279 * 120.10186 * 0.22669 * 19 13 12 21 21 H 0.97007 * 119.99787 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 23 23 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 24 24 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 25 25 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 26 26 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 27 27 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 28 28 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 29 29 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 30 30 H 1.09001 * 109.61882 * 229.61771 * 14 13 12 31 31 H 1.09002 * 109.61998 * 350.16576 * 14 13 12 32 32 H 1.09000 * 109.35206 * 324.18327 * 15 14 13 33 33 H 1.08998 * 109.20284 * 204.68326 * 15 14 13 34 34 H 1.08997 * 109.32184 * 307.95205 * 17 16 15 35 35 H 1.09000 * 109.16839 * 188.41795 * 17 16 15 36 36 H 1.09004 * 109.68138 * 157.54211 * 18 17 16 37 37 H 1.08998 * 109.68189 * 36.98161 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 7 1.7418 -7.4187 -0.0018 14 6 1.3776 -8.0599 1.2724 15 6 -0.1453 -7.9562 1.4467 16 8 -0.7960 -9.0161 0.7675 17 6 -0.7736 -9.0382 -0.6498 18 6 0.6471 -9.3072 -1.1568 19 6 1.4085 -7.9980 -1.1611 20 8 1.7154 -7.4763 -2.2121 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8895 24 1 2.8718 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 0.8538 -5.0445 -0.8914 27 1 0.8532 -5.0451 0.8885 28 1 3.1017 -6.0922 -0.8901 29 1 3.1004 -6.0924 0.8899 30 1 1.6753 -9.1083 1.2527 31 1 1.8785 -7.5498 2.0951 32 1 -0.4911 -7.0046 1.0430 33 1 -0.3889 -8.0062 2.5079 34 1 -1.1165 -8.0763 -1.0309 35 1 -1.4386 -9.8250 -1.0060 36 1 0.6055 -9.7111 -2.1684 37 1 1.1438 -10.0185 -0.4970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395442880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:04 Heat of formation + Delta-G solvation = -99.430102 kcal Electronic energy + Delta-G solvation = -17569.142105 eV Core-core repulsion = 14731.890572 eV Total energy + Delta-G solvation = -2837.251533 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58260 -38.02452 -36.13321 -34.30673 -32.40845 -31.96792 -29.92026 -27.94241 -25.36306 -24.51596 -22.54950 -21.97659 -20.07783 -19.04309 -17.51928 -16.89619 -16.57295 -16.21445 -15.71374 -14.98459 -14.65146 -14.43083 -14.08280 -13.85652 -13.15780 -12.88783 -12.61475 -12.28771 -12.06573 -11.98162 -11.71939 -11.63354 -11.15940 -10.95832 -10.55218 -10.51377 -10.46123 -10.10714 -9.72417 -9.65314 -9.38693 -9.07528 -8.57662 -8.32982 -5.97743 -3.99935 2.56505 2.92097 3.32303 3.39606 3.41454 3.43998 4.25714 4.47902 4.63864 4.76791 4.80397 4.85955 4.96718 5.12071 5.30251 5.38041 5.38911 5.50524 5.54584 5.59804 5.67504 5.77344 5.98938 6.12076 6.46607 6.53735 6.77067 6.92016 7.04082 7.16905 7.35480 7.70654 7.85689 8.02882 8.13676 8.45751 9.07652 9.64077 11.13733 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.004340 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.112714 B = 6450.584105 C = 6625.795634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.130 4.130 12 C 0.111 3.889 13 N -0.613 5.613 14 C 0.074 3.926 15 C 0.045 3.955 16 O -0.389 6.389 17 C 0.075 3.925 18 C -0.176 4.176 19 C 0.507 3.493 20 O -0.539 6.539 21 H 0.259 0.741 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -20.289 3.429 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.169 4.169 12 C -0.010 4.010 13 N -0.346 5.346 14 C -0.049 4.049 15 C -0.033 4.033 16 O -0.308 6.308 17 C -0.002 4.002 18 C -0.217 4.217 19 C 0.295 3.705 20 O -0.416 6.416 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.473 -20.023 2.965 20.247 hybrid contribution 0.591 1.230 -0.082 1.367 sum 1.064 -18.794 2.883 19.043 Atomic orbital electron populations 1.69979 1.06084 1.26423 1.51119 1.25034 0.94838 0.99267 0.95387 0.86547 0.80134 0.83837 0.77558 1.19733 1.21016 1.21032 1.21321 0.93077 0.91141 1.50229 0.92651 1.19085 0.94009 0.91381 0.97090 1.21566 0.99125 0.93568 1.00298 1.22002 0.98395 0.94747 1.01711 1.21762 0.94626 0.81672 1.02978 1.48142 1.56953 1.23569 1.05893 1.22692 0.96531 0.99143 0.86541 1.23114 0.91269 0.90846 0.98032 1.87070 1.75696 1.49016 1.18988 1.22332 0.94384 1.02685 0.80784 1.22763 0.97733 0.95954 1.05224 1.20653 0.79610 0.86733 0.83533 1.90742 1.54351 1.65507 1.30953 0.93101 0.96705 0.96764 0.93376 0.93230 0.92226 0.92557 0.89941 0.90644 0.89872 0.88298 0.91930 0.87369 0.92657 0.87535 0.87526 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.13 -2.27 5.54 -26.73 -0.15 -2.42 16 12 C 0.11 1.60 5.41 -4.04 -0.02 1.58 16 13 N -0.61 -7.75 2.49 -172.68 -0.43 -8.18 16 14 C 0.07 0.66 6.01 -3.32 -0.02 0.64 16 15 C 0.04 0.42 6.68 37.49 0.25 0.67 16 16 O -0.39 -3.95 10.27 -35.18 -0.36 -4.31 16 17 C 0.08 0.71 6.60 37.27 0.25 0.95 16 18 C -0.18 -1.71 5.64 -27.40 -0.15 -1.87 16 19 C 0.51 7.14 6.85 -11.04 -0.08 7.06 16 20 O -0.54 -10.01 16.66 5.56 0.09 -9.92 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.08 1.33 7.41 -51.93 -0.38 0.94 16 29 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 30 H 0.08 0.62 7.05 -51.93 -0.37 0.26 16 31 H 0.10 0.73 7.78 -51.93 -0.40 0.32 16 32 H 0.06 0.71 8.00 -51.93 -0.42 0.30 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.61 7.90 -51.93 -0.41 0.19 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 0.78 7.10 -51.93 -0.37 0.41 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -34.12 303.33 -7.12 -41.24 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.10 Total: -4.43 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.61 Total: -9.19 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.31 Total: -34.95 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.27 Total: -14.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.12 -7.12 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395442880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.189 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds