Wall clock time and date at job start Mon Mar 30 2020 03:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47178 * 300.00045 * 3 2 1 6 6 H 1.48498 * 109.47163 * 60.00307 * 3 2 1 7 7 C 1.37885 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47188 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.47212 * 120.01033 * 269.72355 * 13 12 11 15 15 C 1.53633 * 108.30355 * 109.91561 * 14 13 12 16 16 O 1.41711 * 110.50563 * 84.48330 * 15 14 13 17 17 C 1.41757 * 118.91958 * 291.43064 * 16 15 14 18 18 C 1.53221 * 110.37711 * 68.23670 * 17 16 15 19 19 C 1.33818 * 120.00967 * 90.00343 * 13 12 11 20 20 O 1.21279 * 120.10186 * 0.22669 * 19 13 12 21 21 H 0.97007 * 119.99787 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00495 * 9 7 2 23 23 H 1.08992 * 109.47413 * 300.00826 * 9 7 2 24 24 H 1.09001 * 109.46993 * 60.00038 * 10 9 7 25 25 H 1.09004 * 109.47298 * 300.00453 * 10 9 7 26 26 H 1.09001 * 109.46832 * 60.00325 * 11 10 9 27 27 H 1.08993 * 109.47194 * 299.99846 * 11 10 9 28 28 H 1.09001 * 109.46801 * 300.00272 * 12 11 10 29 29 H 1.09001 * 109.46998 * 59.99868 * 12 11 10 30 30 H 1.09001 * 109.61882 * 229.61771 * 14 13 12 31 31 H 1.09002 * 109.61998 * 350.16576 * 14 13 12 32 32 H 1.09000 * 109.35206 * 324.18327 * 15 14 13 33 33 H 1.08998 * 109.20284 * 204.68326 * 15 14 13 34 34 H 1.08997 * 109.32184 * 307.95205 * 17 16 15 35 35 H 1.09000 * 109.16839 * 188.41795 * 17 16 15 36 36 H 1.09004 * 109.68138 * 157.54211 * 18 17 16 37 37 H 1.08998 * 109.68189 * 36.98161 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4744 -6.1501 -0.0005 13 7 1.7418 -7.4187 -0.0018 14 6 1.3776 -8.0599 1.2724 15 6 -0.1453 -7.9562 1.4467 16 8 -0.7960 -9.0161 0.7675 17 6 -0.7736 -9.0382 -0.6498 18 6 0.6471 -9.3072 -1.1568 19 6 1.4085 -7.9980 -1.1611 20 8 1.7154 -7.4763 -2.2121 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8895 24 1 2.8718 -3.6044 0.8895 25 1 2.8719 -3.6044 -0.8905 26 1 0.8538 -5.0445 -0.8914 27 1 0.8532 -5.0451 0.8885 28 1 3.1017 -6.0922 -0.8901 29 1 3.1004 -6.0924 0.8899 30 1 1.6753 -9.1083 1.2527 31 1 1.8785 -7.5498 2.0951 32 1 -0.4911 -7.0046 1.0430 33 1 -0.3889 -8.0062 2.5079 34 1 -1.1165 -8.0763 -1.0309 35 1 -1.4386 -9.8250 -1.0060 36 1 0.6055 -9.7111 -2.1684 37 1 1.1438 -10.0185 -0.4970 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395442880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:04 Heat of formation + Delta-G solvation = -122.390340 kcal Electronic energy + Delta-G solvation = -17570.137735 eV Core-core repulsion = 14731.890572 eV Total energy + Delta-G solvation = -2838.247164 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56827 -38.93736 -37.42861 -35.97886 -34.27676 -32.86654 -31.27046 -29.33618 -26.79695 -25.74633 -23.67317 -23.28834 -21.85758 -20.07054 -18.51796 -18.44911 -17.80419 -17.32734 -16.70163 -16.53186 -16.19540 -15.87648 -15.06353 -14.86875 -14.60185 -14.17472 -13.85486 -13.75698 -13.60411 -13.33193 -12.88179 -12.73833 -12.61976 -12.37822 -12.33446 -12.19537 -11.81572 -11.45567 -11.41624 -11.19585 -10.87306 -10.81244 -10.59019 -9.71021 -8.22517 -6.34433 1.38221 1.39265 1.49568 1.52758 1.95049 2.39465 2.70507 3.10471 3.38389 3.85418 3.95674 4.02092 4.07343 4.15172 4.16525 4.24236 4.38377 4.45315 4.55713 4.68171 4.74613 4.81932 4.85539 4.88787 4.95522 5.08198 5.19300 5.23879 5.48350 5.51414 5.71376 5.82513 6.20526 6.22025 6.43096 6.83021 7.07545 7.35357 8.89808 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.004340 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.112714 B = 6450.584105 C = 6625.795634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.116 4.116 12 C 0.119 3.881 13 N -0.611 5.611 14 C 0.072 3.928 15 C 0.042 3.958 16 O -0.393 6.393 17 C 0.076 3.924 18 C -0.164 4.164 19 C 0.495 3.505 20 O -0.596 6.596 21 H 0.264 0.736 22 H -0.021 1.021 23 H -0.005 1.005 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.027 0.973 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.034 0.966 33 H 0.135 0.865 34 H 0.030 0.970 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 -21.425 5.009 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.133 4.133 11 C -0.155 4.155 12 C -0.004 4.004 13 N -0.342 5.342 14 C -0.049 4.049 15 C -0.035 4.035 16 O -0.312 6.312 17 C -0.001 4.001 18 C -0.204 4.204 19 C 0.285 3.715 20 O -0.477 6.477 21 H 0.073 0.927 22 H -0.003 1.003 23 H 0.013 0.987 24 H 0.086 0.914 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.053 0.947 33 H 0.153 0.847 34 H 0.048 0.952 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.629 -21.190 4.585 21.741 hybrid contribution 0.164 1.576 -0.555 1.679 sum 1.793 -19.614 4.029 20.104 Atomic orbital electron populations 1.70115 1.07959 1.27762 1.51795 1.26040 0.95787 1.03580 0.94621 0.85353 0.79096 0.78480 0.77842 1.18415 1.20551 1.19996 1.21764 0.93644 0.92370 1.50446 0.91985 1.19009 0.94478 0.93483 0.94369 1.21369 0.97998 0.93094 1.00859 1.21806 0.98495 0.94611 1.00573 1.21550 0.93743 0.81437 1.03653 1.48266 1.56057 1.22705 1.07205 1.23001 0.96244 1.00524 0.85161 1.23209 0.91597 0.89444 0.99221 1.87079 1.75937 1.49009 1.19131 1.22423 0.94642 1.02453 0.80607 1.22761 0.97241 0.93792 1.06569 1.21547 0.79058 0.87930 0.83011 1.90711 1.56689 1.67297 1.33022 0.92748 1.00293 0.98711 0.91422 0.93836 0.95451 0.91603 0.91957 0.87228 0.87432 0.85979 0.94743 0.84722 0.95176 0.84621 0.86669 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 11 C -0.12 -4.14 5.54 30.60 0.17 -3.97 16 12 C 0.12 3.32 5.41 86.38 0.47 3.79 16 13 N -0.61 -14.69 2.49 -819.15 -2.04 -16.72 16 14 C 0.07 1.06 6.01 86.46 0.52 1.58 16 15 C 0.04 0.71 6.68 72.20 0.48 1.19 16 16 O -0.39 -7.08 10.27 -148.81 -1.53 -8.61 16 17 C 0.08 1.31 6.60 72.06 0.48 1.78 16 18 C -0.16 -2.88 5.64 30.16 0.17 -2.71 16 19 C 0.50 13.79 6.85 88.05 0.60 14.40 16 20 O -0.60 -22.98 16.66 -3.03 -0.05 -23.03 16 21 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 22 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 23 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.04 1.87 8.14 -2.38 -0.02 1.86 16 26 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 28 H 0.06 2.02 7.41 -2.39 -0.02 2.00 16 29 H 0.11 2.34 7.87 -2.39 -0.02 2.32 16 30 H 0.11 1.14 7.05 -2.39 -0.02 1.12 16 31 H 0.12 1.28 7.78 -2.39 -0.02 1.26 16 32 H 0.03 0.77 8.00 -2.39 -0.02 0.75 16 33 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 0.67 7.90 -2.39 -0.02 0.65 16 35 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.12 1.54 7.10 -2.39 -0.02 1.53 16 Total: -1.00 -76.83 303.33 3.61 -73.22 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.03 Total: 4.14 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.89 Total: -17.85 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.75 Total: -75.05 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.58 Total: -31.64 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.83 3.61 -73.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395442880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.173 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds