Wall clock time and date at job start Mon Mar 30 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48507 * 109.47197 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47338 * 120.00020 * 3 2 1 6 6 H 1.48503 * 109.47439 * 240.00204 * 3 2 1 7 7 C 1.37883 * 120.00357 * 179.72145 * 2 1 3 8 8 H 1.08000 * 119.99683 * 335.84533 * 7 2 1 9 9 C 1.50702 * 120.00109 * 155.83671 * 7 2 1 10 10 C 1.53115 * 109.52661 * 294.38358 * 9 7 2 11 11 C 1.53043 * 109.27389 * 182.50589 * 10 9 7 12 12 N 1.46847 * 109.57852 * 59.07896 * 11 10 9 13 13 C 1.46900 * 110.99914 * 174.18967 * 12 11 10 14 14 H 1.09005 * 110.45305 * 68.38843 * 13 12 11 15 15 C 1.54482 * 110.51459 * 305.78377 * 13 12 11 16 16 O 1.44416 * 104.80219 * 217.37359 * 15 13 12 17 17 C 1.44432 * 105.27443 * 40.51433 * 16 15 13 18 18 C 1.54478 * 104.80367 * 319.48423 * 17 16 15 19 19 H 1.08993 * 110.51183 * 142.62159 * 18 17 16 20 20 O 1.42899 * 110.50975 * 265.33391 * 18 17 16 21 21 C 1.46835 * 111.19927 * 298.29376 * 12 11 10 22 22 C 1.53040 * 109.52577 * 61.73997 * 21 12 11 23 23 H 0.96997 * 120.00179 * 174.88434 * 1 2 3 24 24 H 1.09001 * 109.51610 * 54.51246 * 9 7 2 25 25 H 1.09006 * 109.50057 * 302.38129 * 10 9 7 26 26 H 1.09001 * 109.50421 * 62.49473 * 10 9 7 27 27 H 1.09005 * 109.40452 * 299.06695 * 11 10 9 28 28 H 1.09001 * 109.45183 * 179.12767 * 11 10 9 29 29 H 1.09000 * 110.37007 * 336.20838 * 15 13 12 30 30 H 1.09002 * 110.36873 * 98.43265 * 15 13 12 31 31 H 1.09002 * 110.37451 * 78.32092 * 17 16 15 32 32 H 1.09001 * 110.37202 * 200.65082 * 17 16 15 33 33 H 0.96697 * 114.00262 * 294.63854 * 20 18 17 34 34 H 1.09005 * 109.46454 * 301.72533 * 21 12 11 35 35 H 1.09006 * 109.46541 * 181.75607 * 21 12 11 36 36 H 1.09003 * 109.50140 * 180.88333 * 22 21 12 37 37 H 1.08998 * 109.53358 * 60.78084 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0058 8 1 1.5355 -2.0865 0.3929 9 6 3.4126 -1.2538 -0.5281 10 6 3.4022 -0.9668 -2.0321 11 6 4.8259 -1.0904 -2.5798 12 7 5.3360 -2.4434 -2.3237 13 6 6.6467 -2.6405 -2.9569 14 1 7.4032 -2.0291 -2.4649 15 6 6.5760 -2.3057 -4.4634 16 8 7.4323 -3.2799 -5.0984 17 6 7.1689 -4.5230 -4.4118 18 6 7.0458 -4.1328 -2.9222 19 1 6.2704 -4.7242 -2.4353 20 8 8.2984 -4.3008 -2.2554 21 6 5.3998 -2.7229 -0.8836 22 6 3.9930 -2.6497 -0.2855 23 1 -0.4850 -0.8367 -0.0749 24 1 4.0267 -0.5105 -0.0197 25 1 2.7559 -1.6860 -2.5353 26 1 3.0300 0.0426 -2.2074 27 1 5.4682 -0.3607 -2.0867 28 1 4.8194 -0.9018 -3.6534 29 1 5.5531 -2.4054 -4.8266 30 1 6.9460 -1.2967 -4.6456 31 1 6.2370 -4.9628 -4.7672 32 1 7.9962 -5.2181 -4.5549 33 1 8.5971 -5.2191 -2.2049 34 1 6.0395 -1.9856 -0.3984 35 1 5.8104 -3.7202 -0.7250 36 1 4.0428 -2.8419 0.7863 37 1 3.3560 -3.3962 -0.7599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397205028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:38 Heat of formation + Delta-G solvation = -94.227781 kcal Electronic energy + Delta-G solvation = -18339.462876 eV Core-core repulsion = 15502.436932 eV Total energy + Delta-G solvation = -2837.025943 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12844 -37.87431 -36.17890 -34.03121 -31.85648 -30.36717 -29.29225 -28.32859 -25.22326 -23.45843 -22.04988 -21.40561 -20.27392 -18.81936 -17.59753 -17.44528 -16.66631 -16.34811 -15.43868 -14.60015 -14.29660 -13.83318 -13.69699 -13.40828 -13.14941 -12.97134 -12.73583 -12.48960 -11.96514 -11.77786 -11.62113 -11.19186 -11.01696 -10.64360 -10.47821 -10.31514 -10.16358 -9.85599 -9.69364 -9.58356 -9.35147 -8.81879 -8.14756 -8.07449 -6.42594 -4.01140 3.39458 3.44979 3.62807 3.65211 3.86399 4.32897 4.52745 4.53206 4.65514 4.94841 5.18297 5.21868 5.34549 5.43753 5.48187 5.54874 5.61675 5.69818 5.74806 5.88139 5.93452 6.10111 6.19834 6.41388 6.44781 6.53506 6.75179 6.83705 6.99712 7.24734 7.32512 7.46153 7.50951 7.63558 8.22956 8.41537 8.94322 9.63530 10.93182 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.006129 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.616440 B = 4567.484928 C = 4785.377191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.037 3.963 3 Si 1.037 2.963 4 H -0.287 1.287 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.604 4.604 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.051 3.949 12 N -0.525 5.525 13 C 0.055 3.945 14 H 0.063 0.937 15 C 0.052 3.948 16 O -0.373 6.373 17 C 0.020 3.980 18 C 0.075 3.925 19 H 0.084 0.916 20 O -0.560 6.560 21 C 0.057 3.943 22 C -0.096 4.096 23 H 0.269 0.731 24 H 0.014 0.986 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.378 0.622 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.186 -7.465 -7.150 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.169 4.169 3 Si 0.865 3.135 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.641 4.641 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.150 4.150 11 C -0.076 4.076 12 N -0.252 5.252 13 C -0.054 4.054 14 H 0.081 0.919 15 C -0.025 4.025 16 O -0.291 6.291 17 C -0.057 4.057 18 C 0.015 3.985 19 H 0.102 0.898 20 O -0.365 6.365 21 C -0.071 4.071 22 C -0.134 4.134 23 H 0.078 0.922 24 H 0.032 0.968 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.225 0.775 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.744 -5.462 -7.414 16.544 hybrid contribution 0.646 -1.768 0.450 1.936 sum 14.391 -7.230 -6.963 17.546 Atomic orbital electron populations 1.70836 1.07433 1.30473 1.44676 1.25693 0.95888 1.02292 0.93045 0.84133 0.75630 0.76536 0.77163 1.21259 1.21195 1.20439 1.21912 0.98473 0.97560 1.46130 0.92680 1.18980 0.96982 0.92221 0.91512 1.22028 0.92310 1.01338 0.99330 1.22311 0.98413 0.87065 0.99790 1.62039 1.21779 1.28352 1.12993 1.22882 0.92005 0.94595 0.95900 0.91882 1.23543 0.95551 0.93307 0.90054 1.89116 1.63353 1.18697 1.57914 1.24112 1.01710 0.88170 0.91726 1.23178 0.86135 0.97097 0.92049 0.89776 1.86549 1.38122 1.32204 1.79609 1.22221 0.99043 0.99501 0.86315 1.21521 0.92971 1.00175 0.98714 0.92152 0.96786 0.91976 0.92114 0.95449 0.91719 0.90568 0.88881 0.91191 0.88965 0.77516 0.95348 0.91926 0.92611 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.69 55.43 0.76 -26.72 16 2 C 0.04 1.05 5.26 -17.82 -0.09 0.95 16 3 Si 1.04 25.11 26.57 -169.99 -4.52 20.59 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.21 6.00 56.52 0.34 -5.87 16 7 C -0.60 -16.80 8.76 -34.44 -0.30 -17.10 16 8 H 0.05 1.65 7.99 -52.49 -0.42 1.24 16 9 C 0.02 0.52 1.76 -91.65 -0.16 0.36 16 10 C -0.11 -2.39 5.10 -26.65 -0.14 -2.53 16 11 C 0.05 0.90 5.19 -3.83 -0.02 0.88 16 12 N -0.52 -8.61 4.43 -224.81 -1.00 -9.61 16 13 C 0.06 0.79 2.65 -66.14 -0.17 0.62 16 14 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 15 C 0.05 0.69 5.92 37.94 0.22 0.92 16 16 O -0.37 -5.13 11.65 -35.23 -0.41 -5.54 16 17 C 0.02 0.22 7.38 37.93 0.28 0.50 16 18 C 0.07 0.91 3.58 -25.16 -0.09 0.82 16 19 H 0.08 1.02 7.01 -51.93 -0.36 0.65 16 20 O -0.56 -6.55 13.30 -35.23 -0.47 -7.02 16 21 C 0.06 0.97 5.27 -3.84 -0.02 0.95 16 22 C -0.10 -1.94 5.32 -26.65 -0.14 -2.08 16 23 H 0.27 8.16 8.73 -40.82 -0.36 7.80 16 24 H 0.01 0.34 6.71 -51.93 -0.35 -0.01 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.06 1.36 5.53 -51.93 -0.29 1.07 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.00 6.40 -51.93 -0.33 0.66 16 29 H 0.08 1.01 7.40 -51.93 -0.38 0.62 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.38 2.52 9.12 45.56 0.42 2.93 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.96 6.69 -51.93 -0.35 0.62 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -31.27 284.72 -7.05 -38.33 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.08 Total: 1.39 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -0.64 Total: -15.71 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.24 Total: -36.33 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.88 Total: -12.56 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -4.52 Total: 20.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.27 -7.05 -38.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397205028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.900 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds