Wall clock time and date at job start Mon Mar 30 2020 03:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48507 * 109.47197 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47338 * 120.00020 * 3 2 1 6 6 H 1.48503 * 109.47439 * 240.00204 * 3 2 1 7 7 C 1.37883 * 120.00357 * 179.72145 * 2 1 3 8 8 H 1.08000 * 119.99683 * 335.84533 * 7 2 1 9 9 C 1.50702 * 120.00109 * 155.83671 * 7 2 1 10 10 C 1.53115 * 109.52661 * 294.38358 * 9 7 2 11 11 C 1.53043 * 109.27389 * 182.50589 * 10 9 7 12 12 N 1.46847 * 109.57852 * 59.07896 * 11 10 9 13 13 C 1.46900 * 110.99914 * 174.18967 * 12 11 10 14 14 H 1.09005 * 110.45305 * 68.38843 * 13 12 11 15 15 C 1.54482 * 110.51459 * 305.78377 * 13 12 11 16 16 O 1.44416 * 104.80219 * 217.37359 * 15 13 12 17 17 C 1.44432 * 105.27443 * 40.51433 * 16 15 13 18 18 C 1.54478 * 104.80367 * 319.48423 * 17 16 15 19 19 H 1.08993 * 110.51183 * 142.62159 * 18 17 16 20 20 O 1.42899 * 110.50975 * 265.33391 * 18 17 16 21 21 C 1.46835 * 111.19927 * 298.29376 * 12 11 10 22 22 C 1.53040 * 109.52577 * 61.73997 * 21 12 11 23 23 H 0.96997 * 120.00179 * 174.88434 * 1 2 3 24 24 H 1.09001 * 109.51610 * 54.51246 * 9 7 2 25 25 H 1.09006 * 109.50057 * 302.38129 * 10 9 7 26 26 H 1.09001 * 109.50421 * 62.49473 * 10 9 7 27 27 H 1.09005 * 109.40452 * 299.06695 * 11 10 9 28 28 H 1.09001 * 109.45183 * 179.12767 * 11 10 9 29 29 H 1.09000 * 110.37007 * 336.20838 * 15 13 12 30 30 H 1.09002 * 110.36873 * 98.43265 * 15 13 12 31 31 H 1.09002 * 110.37451 * 78.32092 * 17 16 15 32 32 H 1.09001 * 110.37202 * 200.65082 * 17 16 15 33 33 H 0.96697 * 114.00262 * 294.63854 * 20 18 17 34 34 H 1.09005 * 109.46454 * 301.72533 * 21 12 11 35 35 H 1.09006 * 109.46541 * 181.75607 * 21 12 11 36 36 H 1.09003 * 109.50140 * 180.88333 * 22 21 12 37 37 H 1.08998 * 109.53358 * 60.78084 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0058 8 1 1.5355 -2.0865 0.3929 9 6 3.4126 -1.2538 -0.5281 10 6 3.4022 -0.9668 -2.0321 11 6 4.8259 -1.0904 -2.5798 12 7 5.3360 -2.4434 -2.3237 13 6 6.6467 -2.6405 -2.9569 14 1 7.4032 -2.0291 -2.4649 15 6 6.5760 -2.3057 -4.4634 16 8 7.4323 -3.2799 -5.0984 17 6 7.1689 -4.5230 -4.4118 18 6 7.0458 -4.1328 -2.9222 19 1 6.2704 -4.7242 -2.4353 20 8 8.2984 -4.3008 -2.2554 21 6 5.3998 -2.7229 -0.8836 22 6 3.9930 -2.6497 -0.2855 23 1 -0.4850 -0.8367 -0.0749 24 1 4.0267 -0.5105 -0.0197 25 1 2.7559 -1.6860 -2.5353 26 1 3.0300 0.0426 -2.2074 27 1 5.4682 -0.3607 -2.0867 28 1 4.8194 -0.9018 -3.6534 29 1 5.5531 -2.4054 -4.8266 30 1 6.9460 -1.2967 -4.6456 31 1 6.2370 -4.9628 -4.7672 32 1 7.9962 -5.2181 -4.5549 33 1 8.5971 -5.2191 -2.2049 34 1 6.0395 -1.9856 -0.3984 35 1 5.8104 -3.7202 -0.7250 36 1 4.0428 -2.8419 0.7863 37 1 3.3560 -3.3962 -0.7599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397205028.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:37 Heat of formation + Delta-G solvation = -119.807435 kcal Electronic energy + Delta-G solvation = -18340.572093 eV Core-core repulsion = 15502.436932 eV Total energy + Delta-G solvation = -2838.135160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.20302 -39.25347 -37.06435 -35.76856 -33.74850 -31.85425 -30.51630 -29.39169 -26.97917 -24.68351 -23.61177 -22.77744 -21.44567 -20.48046 -19.64884 -18.54436 -17.70495 -17.29940 -16.46676 -16.04150 -15.65153 -15.39216 -15.27721 -15.00092 -14.63481 -14.13019 -14.05949 -13.85324 -13.45452 -13.14402 -13.00994 -12.58555 -12.43104 -12.19463 -11.97782 -11.92309 -11.67294 -11.39781 -11.20600 -11.08440 -10.77503 -10.61068 -10.34654 -9.38574 -8.70853 -6.30251 1.45500 1.51909 1.72335 2.50397 2.55684 2.96709 3.02559 3.29959 3.58097 3.74196 3.97980 4.06703 4.10054 4.21088 4.28310 4.40203 4.47347 4.59131 4.61007 4.67417 4.72371 4.76074 4.77441 4.84759 4.91779 4.98216 5.15627 5.27451 5.51982 5.61353 5.74960 6.02912 6.06680 6.13264 6.19181 6.62349 6.83529 7.42923 8.63073 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041743 B = 0.006129 C = 0.005850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.616440 B = 4567.484928 C = 4785.377191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 1.077 2.923 4 H -0.290 1.290 5 H -0.270 1.270 6 H -0.245 1.245 7 C -0.609 4.609 8 H 0.015 0.985 9 C 0.017 3.983 10 C -0.107 4.107 11 C 0.058 3.942 12 N -0.528 5.528 13 C 0.053 3.947 14 H 0.054 0.946 15 C 0.054 3.946 16 O -0.389 6.389 17 C 0.020 3.980 18 C 0.080 3.920 19 H 0.086 0.914 20 O -0.574 6.574 21 C 0.067 3.933 22 C -0.091 4.091 23 H 0.253 0.747 24 H 0.016 0.984 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.032 0.968 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.399 0.601 34 H 0.029 0.971 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.904 -7.471 -8.250 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.212 4.212 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.646 4.646 8 H 0.034 0.966 9 C -0.002 4.002 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.255 5.255 13 C -0.056 4.056 14 H 0.071 0.929 15 C -0.022 4.022 16 O -0.308 6.308 17 C -0.057 4.057 18 C 0.020 3.980 19 H 0.104 0.896 20 O -0.383 6.383 21 C -0.061 4.061 22 C -0.129 4.129 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.250 0.750 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.490 -5.516 -8.520 19.363 hybrid contribution -0.230 -1.902 0.837 2.090 sum 16.261 -7.418 -7.683 19.454 Atomic orbital electron populations 1.70963 1.08681 1.29577 1.47699 1.27091 0.95829 1.06071 0.92205 0.83635 0.75101 0.72246 0.79191 1.21607 1.19562 1.16930 1.22167 1.00779 0.96061 1.45584 0.96620 1.19000 0.94167 0.94250 0.92774 1.21825 0.94942 1.00137 0.97587 1.22184 0.95595 0.87976 1.01169 1.61981 1.23458 1.27589 1.12469 1.22926 0.90219 0.96165 0.96257 0.92854 1.23543 0.95650 0.93946 0.89111 1.89103 1.63550 1.19704 1.58404 1.24277 1.03252 0.87625 0.90566 1.23065 0.86480 0.95509 0.92950 0.89642 1.86497 1.37755 1.34492 1.79562 1.22067 0.96444 1.00836 0.86728 1.21399 0.94871 0.97800 0.98854 0.93795 0.96573 0.93658 0.93154 0.94938 0.89182 0.90615 0.87821 0.90316 0.86625 0.74988 0.95318 0.89771 0.92908 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.69 21.45 0.29 -58.51 16 2 C -0.01 -0.76 5.26 84.66 0.45 -0.31 16 3 Si 1.08 50.01 26.57 68.60 1.82 51.84 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 6 H -0.25 -10.04 6.00 99.48 0.60 -9.44 16 7 C -0.61 -34.78 8.76 25.60 0.22 -34.56 16 8 H 0.02 0.98 7.99 -2.91 -0.02 0.96 16 9 C 0.02 0.80 1.76 -11.46 -0.02 0.78 16 10 C -0.11 -4.44 5.10 30.65 0.16 -4.29 16 11 C 0.06 1.88 5.19 86.33 0.45 2.33 16 12 N -0.53 -15.99 4.43 -865.16 -3.83 -19.83 16 13 C 0.05 1.37 2.65 45.93 0.12 1.49 16 14 H 0.05 1.51 8.00 -2.38 -0.02 1.49 16 15 C 0.05 1.28 5.92 72.49 0.43 1.70 16 16 O -0.39 -9.54 11.65 -148.98 -1.74 -11.27 16 17 C 0.02 0.37 7.38 72.48 0.53 0.90 16 18 C 0.08 1.68 3.58 31.61 0.11 1.80 16 19 H 0.09 1.79 7.01 -2.39 -0.02 1.78 16 20 O -0.57 -11.53 13.30 -148.98 -1.98 -13.51 16 21 C 0.07 2.14 5.27 86.33 0.46 2.59 16 22 C -0.09 -3.64 5.32 30.65 0.16 -3.48 16 23 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 24 H 0.02 0.75 6.71 -2.39 -0.02 0.73 16 25 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.05 2.17 5.53 -2.39 -0.01 2.16 16 27 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.09 2.48 6.40 -2.39 -0.02 2.46 16 29 H 0.08 1.78 7.40 -2.39 -0.02 1.76 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.12 1.59 8.09 -2.39 -0.02 1.57 16 33 H 0.40 3.91 9.12 -74.06 -0.68 3.24 16 34 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.08 2.35 6.69 -2.38 -0.02 2.34 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -68.41 284.72 -2.13 -70.54 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.23 Total: 11.79 kcal Atomic # 6 Polarization: -34.11 SS G_CDS: 3.07 Total: -31.04 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -3.54 Total: -78.34 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -3.72 Total: -24.78 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 1.82 Total: 51.84 kcal Total: -68.41 -2.13 -70.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397205028.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.268 kcal (2) G-P(sol) polarization free energy of solvation -68.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds