Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99678 * 2 1 4 4 H 1.48502 * 109.47153 * 269.99941 * 3 2 1 5 5 H 1.48494 * 109.47434 * 30.00165 * 3 2 1 6 6 H 1.48501 * 109.47062 * 150.00356 * 3 2 1 7 7 C 1.37870 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.53122 * 109.52403 * 60.31121 * 9 7 2 11 11 C 1.53038 * 109.27617 * 177.55979 * 10 9 7 12 12 N 1.46846 * 109.52501 * 300.82332 * 11 10 9 13 13 C 1.46898 * 110.99848 * 185.84021 * 12 11 10 14 14 H 1.09007 * 110.80617 * 305.55104 * 13 12 11 15 15 C 1.54997 * 110.90797 * 181.92348 * 13 12 11 16 16 O 1.44386 * 103.49048 * 204.77703 * 15 13 12 17 17 C 1.43747 * 106.97488 * 40.05988 * 16 15 13 18 18 C 1.54107 * 107.29134 * 333.48577 * 17 16 15 19 19 H 1.08998 * 110.48456 * 243.35122 * 18 17 16 20 20 O 1.42901 * 110.48455 * 120.70527 * 18 17 16 21 21 C 1.46841 * 111.19909 * 61.74461 * 12 11 10 22 22 C 1.53038 * 109.52287 * 298.25644 * 21 12 11 23 23 H 0.97005 * 120.00465 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.51865 * 300.12421 * 9 7 2 25 25 H 1.09002 * 109.49959 * 57.62523 * 10 9 7 26 26 H 1.08999 * 109.50360 * 297.50505 * 10 9 7 27 27 H 1.09002 * 109.45954 * 180.80272 * 11 10 9 28 28 H 1.09006 * 109.45839 * 60.84310 * 11 10 9 29 29 H 1.09000 * 110.61843 * 323.27986 * 15 13 12 30 30 H 1.09002 * 110.61338 * 86.27956 * 15 13 12 31 31 H 1.08996 * 109.87777 * 92.90945 * 17 16 15 32 32 H 1.08995 * 109.87546 * 213.91244 * 17 16 15 33 33 H 0.96706 * 114.00268 * 65.23009 * 20 18 17 34 34 H 1.09006 * 109.46746 * 58.26928 * 21 12 11 35 35 H 1.09000 * 109.46758 * 178.24247 * 21 12 11 36 36 H 1.09000 * 109.50678 * 179.12311 * 22 21 12 37 37 H 1.09005 * 109.50433 * 299.23751 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3767 -2.5852 -1.2535 11 6 -0.3389 -3.9378 -1.2786 12 7 0.6550 -5.0189 -1.2778 13 6 0.0088 -6.3280 -1.4410 14 1 -0.7641 -6.4751 -0.6865 15 6 1.0546 -7.4710 -1.3916 16 8 0.4225 -8.5380 -2.1310 17 6 -0.2367 -7.9350 -3.2571 18 6 -0.5736 -6.4827 -2.8669 19 1 -1.6530 -6.3310 -2.8567 20 8 0.0532 -5.5652 -3.7654 21 6 1.4753 -4.9851 -0.0603 22 6 2.2451 -3.6638 0.0011 23 1 -0.4851 0.8400 0.0004 24 1 0.6221 -2.5566 0.8890 25 1 1.0024 -2.4881 -2.1407 26 1 -0.3613 -1.7833 -1.2383 27 1 -0.9513 -4.0080 -2.1776 28 1 -0.9750 -4.0285 -0.3980 29 1 1.9814 -7.1645 -1.8766 30 1 1.2415 -7.7759 -0.3619 31 1 0.4263 -7.9420 -4.1222 32 1 -1.1515 -8.4811 -3.4870 33 1 -0.2738 -5.6188 -4.6740 34 1 0.8308 -5.0709 0.8145 35 1 2.1807 -5.8160 -0.0744 36 1 2.8419 -3.6324 0.9127 37 1 2.9002 -3.5836 -0.8664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397205029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -89.380428 kcal Electronic energy + Delta-G solvation = -18406.805678 eV Core-core repulsion = 15569.989932 eV Total energy + Delta-G solvation = -2836.815746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93931 -37.57173 -35.92754 -33.80875 -31.50924 -29.90803 -29.22082 -28.10446 -25.30264 -23.27793 -21.98263 -21.32259 -20.18049 -18.66275 -17.63216 -16.63675 -16.15924 -15.37148 -15.33529 -14.59699 -14.36835 -14.13777 -13.45399 -13.10050 -13.00711 -12.76532 -12.43554 -12.15557 -11.93517 -11.52665 -11.25888 -10.89058 -10.68814 -10.61778 -10.33426 -10.16041 -9.98694 -9.90151 -9.72693 -9.35804 -8.89674 -8.64249 -8.24558 -7.68036 -5.92956 -3.97920 3.34391 3.40767 3.44248 3.74305 4.21806 4.45552 4.49404 4.54014 4.79911 4.99752 5.23640 5.35186 5.37709 5.58630 5.69048 5.73587 5.75879 5.87476 5.97845 6.13697 6.27316 6.36300 6.67734 6.69744 6.72220 6.90357 7.12747 7.24091 7.49037 7.64956 7.68659 7.83473 7.89689 8.11674 8.21632 8.53648 9.05714 9.66163 11.13292 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049042 B = 0.005768 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.804414 B = 4852.989138 C = 5111.391689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.100 4.100 11 C 0.064 3.936 12 N -0.504 5.504 13 C 0.054 3.946 14 H 0.059 0.941 15 C 0.055 3.945 16 O -0.379 6.379 17 C 0.018 3.982 18 C 0.079 3.921 19 H 0.065 0.935 20 O -0.524 6.524 21 C 0.054 3.946 22 C -0.105 4.105 23 H 0.258 0.742 24 H 0.019 0.981 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.367 0.633 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -13.305 -5.321 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.139 4.139 11 C -0.063 4.063 12 N -0.230 5.230 13 C -0.056 4.056 14 H 0.077 0.923 15 C -0.022 4.022 16 O -0.297 6.297 17 C -0.059 4.059 18 C 0.018 3.982 19 H 0.083 0.917 20 O -0.327 6.327 21 C -0.073 4.073 22 C -0.143 4.143 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.212 0.788 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.810 -13.165 -5.114 14.239 hybrid contribution -0.540 0.807 0.115 0.978 sum -2.350 -12.358 -4.999 13.536 Atomic orbital electron populations 1.69881 1.05874 1.26217 1.51286 1.24962 0.94823 0.98972 0.95266 0.86638 0.79873 0.83686 0.78042 1.20744 1.21379 1.20010 1.21214 0.92871 0.90692 1.49884 0.92783 1.18699 0.92740 0.91733 0.94002 1.21615 1.00110 0.92802 0.99325 1.22234 0.92890 0.92855 0.98306 1.61950 1.23350 1.00115 1.37574 1.23201 0.96042 0.92153 0.94213 0.92315 1.23672 0.96069 0.85636 0.96820 1.88848 1.70351 1.30847 1.39665 1.23989 0.97546 0.93916 0.90487 1.23074 0.96088 0.88068 0.90934 0.91668 1.86885 1.65123 1.59454 1.21222 1.22225 0.95891 0.99547 0.89647 1.21662 0.98710 0.93610 1.00279 0.93170 0.96277 0.93656 0.89138 0.92240 0.96610 0.90584 0.89043 0.91523 0.89813 0.78781 0.95924 0.92378 0.93219 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 11.37 55.43 0.63 -25.11 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.99 16 10 C -0.10 -2.43 5.12 -26.65 -0.14 -2.56 16 11 C 0.06 1.30 5.15 -3.83 -0.02 1.28 16 12 N -0.50 -9.19 3.89 -224.29 -0.87 -10.06 16 13 C 0.05 0.81 2.77 -65.71 -0.18 0.63 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.05 0.75 5.76 38.21 0.22 0.97 16 16 O -0.38 -5.24 11.52 -35.23 -0.41 -5.64 16 17 C 0.02 0.20 7.52 37.74 0.28 0.49 16 18 C 0.08 1.01 3.61 -25.20 -0.09 0.92 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 20 O -0.52 -7.28 11.60 -35.23 -0.41 -7.69 16 21 C 0.05 1.00 5.23 -3.84 -0.02 0.98 16 22 C -0.10 -2.25 5.32 -26.65 -0.14 -2.39 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.09 2.43 6.17 -51.93 -0.32 2.10 16 27 H 0.06 1.14 6.74 -51.93 -0.35 0.79 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 1.11 8.07 -51.93 -0.42 0.70 16 30 H 0.09 1.14 7.93 -51.93 -0.41 0.72 16 31 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.37 3.26 9.12 45.56 0.42 3.67 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 287.68 15.07 4.34 4.34 Total: -1.00 -30.68 287.68 -7.61 -38.29 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.19 Total: 0.94 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -0.67 Total: -11.59 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.24 Total: -35.17 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.81 Total: -13.33 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.68 -7.61 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397205029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.092 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds