Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99678 * 2 1 4 4 H 1.48502 * 109.47153 * 269.99941 * 3 2 1 5 5 H 1.48494 * 109.47434 * 30.00165 * 3 2 1 6 6 H 1.48501 * 109.47062 * 150.00356 * 3 2 1 7 7 C 1.37870 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00305 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.53122 * 109.52403 * 60.31121 * 9 7 2 11 11 C 1.53038 * 109.27617 * 177.55979 * 10 9 7 12 12 N 1.46846 * 109.52501 * 300.82332 * 11 10 9 13 13 C 1.46898 * 110.99848 * 185.84021 * 12 11 10 14 14 H 1.09007 * 110.80617 * 305.55104 * 13 12 11 15 15 C 1.54997 * 110.90797 * 181.92348 * 13 12 11 16 16 O 1.44386 * 103.49048 * 204.77703 * 15 13 12 17 17 C 1.43747 * 106.97488 * 40.05988 * 16 15 13 18 18 C 1.54107 * 107.29134 * 333.48577 * 17 16 15 19 19 H 1.08998 * 110.48456 * 243.35122 * 18 17 16 20 20 O 1.42901 * 110.48455 * 120.70527 * 18 17 16 21 21 C 1.46841 * 111.19909 * 61.74461 * 12 11 10 22 22 C 1.53038 * 109.52287 * 298.25644 * 21 12 11 23 23 H 0.97005 * 120.00465 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.51865 * 300.12421 * 9 7 2 25 25 H 1.09002 * 109.49959 * 57.62523 * 10 9 7 26 26 H 1.08999 * 109.50360 * 297.50505 * 10 9 7 27 27 H 1.09002 * 109.45954 * 180.80272 * 11 10 9 28 28 H 1.09006 * 109.45839 * 60.84310 * 11 10 9 29 29 H 1.09000 * 110.61843 * 323.27986 * 15 13 12 30 30 H 1.09002 * 110.61338 * 86.27956 * 15 13 12 31 31 H 1.08996 * 109.87777 * 92.90945 * 17 16 15 32 32 H 1.08995 * 109.87546 * 213.91244 * 17 16 15 33 33 H 0.96706 * 114.00268 * 65.23009 * 20 18 17 34 34 H 1.09006 * 109.46746 * 58.26928 * 21 12 11 35 35 H 1.09000 * 109.46758 * 178.24247 * 21 12 11 36 36 H 1.09000 * 109.50678 * 179.12311 * 22 21 12 37 37 H 1.09005 * 109.50433 * 299.23751 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 0.3767 -2.5852 -1.2535 11 6 -0.3389 -3.9378 -1.2786 12 7 0.6550 -5.0189 -1.2778 13 6 0.0088 -6.3280 -1.4410 14 1 -0.7641 -6.4751 -0.6865 15 6 1.0546 -7.4710 -1.3916 16 8 0.4225 -8.5380 -2.1310 17 6 -0.2367 -7.9350 -3.2571 18 6 -0.5736 -6.4827 -2.8669 19 1 -1.6530 -6.3310 -2.8567 20 8 0.0532 -5.5652 -3.7654 21 6 1.4753 -4.9851 -0.0603 22 6 2.2451 -3.6638 0.0011 23 1 -0.4851 0.8400 0.0004 24 1 0.6221 -2.5566 0.8890 25 1 1.0024 -2.4881 -2.1407 26 1 -0.3613 -1.7833 -1.2383 27 1 -0.9513 -4.0080 -2.1776 28 1 -0.9750 -4.0285 -0.3980 29 1 1.9814 -7.1645 -1.8766 30 1 1.2415 -7.7759 -0.3619 31 1 0.4263 -7.9420 -4.1222 32 1 -1.1515 -8.4811 -3.4870 33 1 -0.2738 -5.6188 -4.6740 34 1 0.8308 -5.0709 0.8145 35 1 2.1807 -5.8160 -0.0744 36 1 2.8419 -3.6324 0.9127 37 1 2.9002 -3.5836 -0.8664 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397205029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -112.656222 kcal Electronic energy + Delta-G solvation = -18407.814992 eV Core-core repulsion = 15569.989932 eV Total energy + Delta-G solvation = -2837.825061 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07171 -39.08993 -36.94800 -35.61625 -33.33147 -31.57493 -30.44704 -29.32463 -27.19021 -24.61615 -23.67366 -22.72802 -21.41069 -20.41154 -18.75805 -18.42581 -17.55057 -16.68342 -16.38339 -16.34442 -15.74407 -15.52405 -14.86047 -14.67495 -14.44253 -14.15671 -14.10818 -13.75274 -13.36179 -12.91558 -12.78887 -12.61073 -12.51791 -12.28075 -11.99363 -11.86911 -11.52770 -11.29692 -10.97078 -10.78961 -10.69032 -10.61693 -10.35531 -9.13429 -8.06990 -6.20244 1.41591 1.42252 1.52433 2.44685 2.65580 3.14199 3.19982 3.34415 3.56356 3.78740 4.02443 4.17678 4.24786 4.30877 4.35594 4.47114 4.57993 4.69825 4.75207 4.77222 4.82904 4.87928 4.92628 4.99769 5.10983 5.24215 5.35232 5.58216 5.62770 5.75494 6.01913 6.03494 6.30540 6.32792 6.42388 6.91176 7.02215 7.47355 8.97731 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049042 B = 0.005768 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.804414 B = 4852.989138 C = 5111.391689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.043 3.957 10 C -0.089 4.089 11 C 0.079 3.921 12 N -0.510 5.510 13 C 0.044 3.956 14 H 0.063 0.937 15 C 0.061 3.939 16 O -0.390 6.390 17 C 0.021 3.979 18 C 0.080 3.920 19 H 0.081 0.919 20 O -0.551 6.551 21 C 0.059 3.941 22 C -0.098 4.098 23 H 0.260 0.740 24 H -0.012 1.012 25 H 0.027 0.973 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.008 0.992 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.387 0.613 34 H 0.022 0.978 35 H 0.089 0.911 36 H 0.054 0.946 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 -14.559 -5.922 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.127 4.127 11 C -0.048 4.048 12 N -0.236 5.236 13 C -0.066 4.066 14 H 0.081 0.919 15 C -0.016 4.016 16 O -0.309 6.309 17 C -0.056 4.056 18 C 0.020 3.980 19 H 0.099 0.901 20 O -0.357 6.357 21 C -0.068 4.068 22 C -0.136 4.136 23 H 0.069 0.931 24 H 0.006 0.994 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.236 0.764 34 H 0.040 0.960 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.649 -14.439 -5.733 15.623 hybrid contribution -0.605 1.187 0.274 1.360 sum -2.255 -13.253 -5.459 14.509 Atomic orbital electron populations 1.70018 1.07162 1.27023 1.51651 1.25739 0.95685 1.02348 0.94858 0.85627 0.78757 0.79493 0.78196 1.20202 1.20855 1.19341 1.21586 0.92966 0.92295 1.50229 0.93175 1.18678 0.93205 0.92659 0.93019 1.21348 0.99003 0.94518 0.97871 1.21940 0.92774 0.91568 0.98567 1.61844 1.23116 1.01256 1.37367 1.23373 0.96623 0.90460 0.96098 0.91889 1.23598 0.95186 0.85199 0.97607 1.88841 1.70579 1.31034 1.40434 1.24109 0.98686 0.93019 0.89819 1.23115 0.96652 0.88785 0.89458 0.90097 1.86815 1.65930 1.60053 1.22938 1.22164 0.96240 0.98529 0.89872 1.21524 0.97971 0.93980 1.00116 0.93107 0.99402 0.95424 0.92252 0.90964 0.97337 0.91499 0.87690 0.90842 0.87134 0.76391 0.95955 0.89325 0.92713 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 11.37 21.44 0.24 -53.92 16 2 C 0.01 0.67 5.31 84.65 0.45 1.12 16 3 Si 0.95 44.57 29.54 68.60 2.03 46.59 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.53 -30.36 8.56 25.60 0.22 -30.14 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.79 16 9 C 0.04 2.23 2.16 -11.46 -0.02 2.21 16 10 C -0.09 -4.42 5.12 30.65 0.16 -4.27 16 11 C 0.08 3.18 5.15 86.33 0.44 3.63 16 12 N -0.51 -17.97 3.89 -863.53 -3.36 -21.33 16 13 C 0.04 1.22 2.77 46.22 0.13 1.34 16 14 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 15 C 0.06 1.52 5.76 72.67 0.42 1.94 16 16 O -0.39 -9.65 11.52 -148.98 -1.72 -11.37 16 17 C 0.02 0.40 7.52 72.36 0.54 0.94 16 18 C 0.08 1.83 3.61 31.59 0.11 1.94 16 19 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 20 O -0.55 -14.16 11.60 -148.98 -1.73 -15.89 16 21 C 0.06 2.10 5.23 86.33 0.45 2.55 16 22 C -0.10 -4.21 5.32 30.65 0.16 -4.05 16 23 H 0.26 14.54 8.31 -92.70 -0.77 13.77 16 24 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 25 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 3.30 6.17 -2.39 -0.01 3.29 16 27 H 0.07 2.71 6.74 -2.39 -0.02 2.69 16 28 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.07 1.81 8.07 -2.39 -0.02 1.79 16 30 H 0.11 2.30 7.93 -2.39 -0.02 2.29 16 31 H 0.07 1.33 7.97 -2.39 -0.02 1.31 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.39 6.01 9.12 -74.05 -0.68 5.34 16 34 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.09 2.61 6.58 -2.39 -0.02 2.59 16 36 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -66.35 287.68 -1.10 -67.45 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.37 Total: 11.23 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.06 Total: -22.76 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -3.12 Total: -75.25 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -3.44 Total: -27.25 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -66.35 -1.10 -67.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397205029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.208 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds