Wall clock time and date at job start Mon Mar 30 2020 03:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48507 * 109.47103 * 239.99983 * 3 2 1 5 5 H 1.48499 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47281 * 120.00218 * 3 2 1 7 7 C 1.37876 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99508 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.53122 * 109.52182 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.27773 * 177.55867 * 10 9 7 12 12 N 1.46847 * 109.52352 * 300.81939 * 11 10 9 13 13 C 1.46898 * 111.00204 * 185.83773 * 12 11 10 14 14 H 1.08992 * 110.56720 * 190.07304 * 13 12 11 15 15 C 1.54475 * 110.51221 * 312.75980 * 13 12 11 16 16 O 1.44422 * 104.80866 * 142.62035 * 15 13 12 17 17 C 1.44429 * 105.27420 * 319.48984 * 16 15 13 18 18 C 1.54484 * 104.80329 * 40.50650 * 17 16 15 19 19 H 1.09003 * 110.50986 * 94.80627 * 18 17 16 20 20 O 1.42902 * 110.51288 * 217.38086 * 18 17 16 21 21 C 1.46845 * 111.19614 * 61.74324 * 12 11 10 22 22 C 1.53040 * 109.52342 * 298.25469 * 21 12 11 23 23 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.52308 * 59.87394 * 9 7 2 25 25 H 1.08999 * 109.50344 * 57.61375 * 10 9 7 26 26 H 1.08998 * 109.53264 * 297.51777 * 10 9 7 27 27 H 1.08995 * 109.46227 * 180.80572 * 11 10 9 28 28 H 1.08998 * 109.45227 * 60.83195 * 11 10 9 29 29 H 1.09005 * 110.37306 * 23.78796 * 15 13 12 30 30 H 1.08996 * 110.37122 * 261.45543 * 15 13 12 31 31 H 1.09000 * 110.37719 * 159.34023 * 17 16 15 32 32 H 1.09004 * 110.37303 * 281.56953 * 17 16 15 33 33 H 0.96700 * 113.99960 * 298.54843 * 20 18 17 34 34 H 1.08999 * 109.46459 * 58.27216 * 21 12 11 35 35 H 1.09002 * 109.46523 * 178.24291 * 21 12 11 36 36 H 1.09002 * 109.50446 * 299.24006 * 22 21 12 37 37 H 1.09005 * 109.53607 * 179.14112 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 0.0610 12 7 0.6545 -5.0186 1.2782 13 6 0.0082 -6.3276 1.4416 14 1 -0.7328 -6.2919 2.2400 15 6 -0.6453 -6.7778 0.1162 16 8 -0.4258 -8.2042 0.0622 17 6 0.9212 -8.4004 0.5449 18 6 1.0626 -7.4196 1.7301 19 1 0.8450 -7.9243 2.6715 20 8 2.3745 -6.8539 1.7582 21 6 -0.3393 -3.9375 1.2784 22 6 0.3764 -2.5850 1.2533 23 1 -0.4850 0.8400 0.0004 24 1 0.6220 -2.5566 -0.8889 25 1 2.8999 -3.5834 0.8671 26 1 2.8426 -3.6330 -0.9116 27 1 2.1805 -5.8160 0.0756 28 1 0.8309 -5.0709 -0.8140 29 1 -0.1640 -6.2875 -0.7300 30 1 -1.7129 -6.5583 0.1259 31 1 1.0571 -9.4273 0.8840 32 1 1.6429 -8.1608 -0.2361 33 1 3.0807 -7.5039 1.8762 34 1 -0.9751 -4.0284 0.3978 35 1 -0.9520 -4.0075 2.1773 36 1 1.0018 -2.4876 2.1407 37 1 -0.3612 -1.7825 1.2381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397205031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:43 Heat of formation + Delta-G solvation = -80.618896 kcal Electronic energy + Delta-G solvation = -18587.384223 eV Core-core repulsion = 15750.948406 eV Total energy + Delta-G solvation = -2836.435818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21393 -37.38373 -36.04133 -33.79082 -31.50411 -29.80586 -29.09314 -27.99600 -25.30240 -23.43068 -22.13872 -21.65706 -20.04195 -18.34649 -17.68073 -16.47770 -16.25323 -15.55895 -15.32101 -14.59482 -14.45584 -13.98378 -13.68459 -13.11803 -12.89409 -12.67422 -12.36900 -12.13717 -11.71448 -11.40850 -11.28730 -10.98877 -10.85858 -10.63127 -10.35795 -10.34244 -9.93123 -9.81239 -9.67701 -9.36632 -8.78593 -8.65986 -8.23792 -7.58576 -5.92421 -3.97360 3.36101 3.40294 3.43447 3.70157 4.38248 4.47862 4.49908 4.57793 4.74175 5.01922 5.16356 5.24924 5.37647 5.55907 5.66081 5.73236 5.79311 5.91268 6.08468 6.18845 6.29888 6.50546 6.62340 6.65056 6.75067 6.99000 7.17088 7.24010 7.47866 7.61977 7.71931 7.81495 7.91076 8.12132 8.21740 8.54658 9.06224 9.66645 11.13786 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049627 B = 0.005950 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.072640 B = 4704.852999 C = 4922.098759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.053 0.947 9 C 0.047 3.953 10 C -0.103 4.103 11 C 0.055 3.945 12 N -0.502 5.502 13 C 0.058 3.942 14 H 0.095 0.905 15 C 0.002 3.998 16 O -0.373 6.373 17 C 0.010 3.990 18 C 0.080 3.920 19 H 0.070 0.930 20 O -0.524 6.524 21 C 0.052 3.948 22 C -0.102 4.102 23 H 0.259 0.741 24 H 0.019 0.981 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.365 0.635 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 -14.915 2.695 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.028 3.972 10 C -0.141 4.141 11 C -0.072 4.072 12 N -0.227 5.227 13 C -0.053 4.053 14 H 0.113 0.887 15 C -0.076 4.076 16 O -0.291 6.291 17 C -0.068 4.068 18 C 0.019 3.981 19 H 0.087 0.913 20 O -0.327 6.327 21 C -0.075 4.075 22 C -0.141 4.141 23 H 0.069 0.931 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.211 0.789 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.255 -14.303 2.939 14.604 hybrid contribution 0.227 0.383 -0.537 0.697 sum 0.481 -13.920 2.402 14.134 Atomic orbital electron populations 1.69866 1.05863 1.26337 1.51241 1.24968 0.94833 0.98962 0.95278 0.86700 0.79619 0.83348 0.78548 1.20406 1.21408 1.20327 1.21192 0.92852 0.90726 1.49933 0.92842 1.18692 0.92776 0.91885 0.93802 1.21633 0.98651 0.93689 1.00107 1.22378 0.95732 1.00346 0.88722 1.62008 1.21975 0.99798 1.38889 1.23129 0.94193 0.91042 0.96925 0.88661 1.24417 1.02081 0.81542 0.99561 1.89096 1.29994 1.23332 1.86661 1.24273 0.85828 1.00269 0.96397 1.23137 0.84984 0.93101 0.96863 0.91258 1.86914 1.14107 1.36082 1.95591 1.22364 0.93213 0.93450 0.98486 1.21643 1.00157 0.92760 0.99497 0.93106 0.96332 0.92418 0.93549 0.90191 0.96332 0.90524 0.89046 0.89154 0.91476 0.78930 0.96056 0.92744 0.93793 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 11.37 55.43 0.63 -25.14 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.19 2.16 -91.65 -0.20 1.00 16 10 C -0.10 -2.25 5.32 -26.65 -0.14 -2.39 16 11 C 0.06 1.03 4.24 -3.83 -0.02 1.01 16 12 N -0.50 -9.11 4.14 -224.82 -0.93 -10.04 16 13 C 0.06 0.85 3.16 -66.15 -0.21 0.64 16 14 H 0.10 1.32 7.96 -51.93 -0.41 0.91 16 15 C 0.00 0.03 6.61 37.93 0.25 0.28 16 16 O -0.37 -5.25 11.65 -35.23 -0.41 -5.66 16 17 C 0.01 0.11 7.37 37.94 0.28 0.39 16 18 C 0.08 0.97 4.20 -25.16 -0.11 0.86 16 19 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 20 O -0.52 -6.72 9.98 -35.23 -0.35 -7.07 16 21 C 0.05 1.03 5.28 -3.83 -0.02 1.01 16 22 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.37 5.59 -51.93 -0.29 1.08 16 28 H 0.02 0.35 5.96 -51.93 -0.31 0.05 16 29 H 0.08 1.20 5.15 -51.93 -0.27 0.93 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.36 2.86 9.11 45.56 0.42 3.27 16 34 H 0.02 0.43 7.89 -51.93 -0.41 0.02 16 35 H 0.05 0.99 8.00 -51.93 -0.42 0.58 16 36 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -30.61 282.30 -7.45 -38.06 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.93 Total: 1.77 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.69 Total: -12.75 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.30 Total: -35.18 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.76 Total: -12.73 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.61 -7.45 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397205031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.557 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds