Wall clock time and date at job start Mon Mar 30 2020 03:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48507 * 109.47103 * 239.99983 * 3 2 1 5 5 H 1.48499 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47281 * 120.00218 * 3 2 1 7 7 C 1.37876 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99508 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.53122 * 109.52182 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.27773 * 177.55867 * 10 9 7 12 12 N 1.46847 * 109.52352 * 300.81939 * 11 10 9 13 13 C 1.46898 * 111.00204 * 185.83773 * 12 11 10 14 14 H 1.08992 * 110.56720 * 190.07304 * 13 12 11 15 15 C 1.54475 * 110.51221 * 312.75980 * 13 12 11 16 16 O 1.44422 * 104.80866 * 142.62035 * 15 13 12 17 17 C 1.44429 * 105.27420 * 319.48984 * 16 15 13 18 18 C 1.54484 * 104.80329 * 40.50650 * 17 16 15 19 19 H 1.09003 * 110.50986 * 94.80627 * 18 17 16 20 20 O 1.42902 * 110.51288 * 217.38086 * 18 17 16 21 21 C 1.46845 * 111.19614 * 61.74324 * 12 11 10 22 22 C 1.53040 * 109.52342 * 298.25469 * 21 12 11 23 23 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.52308 * 59.87394 * 9 7 2 25 25 H 1.08999 * 109.50344 * 57.61375 * 10 9 7 26 26 H 1.08998 * 109.53264 * 297.51777 * 10 9 7 27 27 H 1.08995 * 109.46227 * 180.80572 * 11 10 9 28 28 H 1.08998 * 109.45227 * 60.83195 * 11 10 9 29 29 H 1.09005 * 110.37306 * 23.78796 * 15 13 12 30 30 H 1.08996 * 110.37122 * 261.45543 * 15 13 12 31 31 H 1.09000 * 110.37719 * 159.34023 * 17 16 15 32 32 H 1.09004 * 110.37303 * 281.56953 * 17 16 15 33 33 H 0.96700 * 113.99960 * 298.54843 * 20 18 17 34 34 H 1.08999 * 109.46459 * 58.27216 * 21 12 11 35 35 H 1.09002 * 109.46523 * 178.24291 * 21 12 11 36 36 H 1.09002 * 109.50446 * 299.24006 * 22 21 12 37 37 H 1.09005 * 109.53607 * 179.14112 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4752 -4.9851 0.0610 12 7 0.6545 -5.0186 1.2782 13 6 0.0082 -6.3276 1.4416 14 1 -0.7328 -6.2919 2.2400 15 6 -0.6453 -6.7778 0.1162 16 8 -0.4258 -8.2042 0.0622 17 6 0.9212 -8.4004 0.5449 18 6 1.0626 -7.4196 1.7301 19 1 0.8450 -7.9243 2.6715 20 8 2.3745 -6.8539 1.7582 21 6 -0.3393 -3.9375 1.2784 22 6 0.3764 -2.5850 1.2533 23 1 -0.4850 0.8400 0.0004 24 1 0.6220 -2.5566 -0.8889 25 1 2.8999 -3.5834 0.8671 26 1 2.8426 -3.6330 -0.9116 27 1 2.1805 -5.8160 0.0756 28 1 0.8309 -5.0709 -0.8140 29 1 -0.1640 -6.2875 -0.7300 30 1 -1.7129 -6.5583 0.1259 31 1 1.0571 -9.4273 0.8840 32 1 1.6429 -8.1608 -0.2361 33 1 3.0807 -7.5039 1.8762 34 1 -0.9751 -4.0284 0.3978 35 1 -0.9520 -4.0075 2.1773 36 1 1.0018 -2.4876 2.1407 37 1 -0.3612 -1.7825 1.2381 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397205031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:43 Heat of formation + Delta-G solvation = -104.013374 kcal Electronic energy + Delta-G solvation = -18588.398684 eV Core-core repulsion = 15750.948406 eV Total energy + Delta-G solvation = -2837.450279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37106 -38.89605 -37.01054 -35.58768 -33.34114 -31.47773 -30.32539 -29.22019 -27.16020 -24.76147 -23.72512 -23.19510 -21.33831 -20.07701 -18.78014 -18.28469 -17.52301 -16.80933 -16.44256 -16.41696 -15.82245 -15.32570 -15.07418 -14.72905 -14.40653 -14.12734 -13.86930 -13.74220 -13.13321 -12.94511 -12.73655 -12.66108 -12.49942 -12.34357 -12.00773 -11.86606 -11.66985 -11.35057 -11.02047 -10.81632 -10.66354 -10.49109 -10.32493 -9.02175 -8.07026 -6.20466 1.41519 1.43184 1.50737 2.44559 2.64865 3.19140 3.25059 3.46103 3.61403 3.69993 3.94939 4.15396 4.21102 4.35301 4.39069 4.47015 4.55870 4.67041 4.72032 4.77198 4.87763 4.89753 4.96390 5.04318 5.18682 5.30456 5.37637 5.54969 5.61825 5.69246 6.01854 6.05249 6.30645 6.37013 6.42575 6.90676 7.05847 7.47033 8.97378 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.049627 B = 0.005950 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.072640 B = 4704.852999 C = 4922.098759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.095 4.095 11 C 0.066 3.934 12 N -0.508 5.508 13 C 0.049 3.951 14 H 0.106 0.894 15 C 0.007 3.993 16 O -0.384 6.384 17 C 0.010 3.990 18 C 0.086 3.914 19 H 0.093 0.907 20 O -0.548 6.548 21 C 0.062 3.938 22 C -0.093 4.093 23 H 0.260 0.740 24 H -0.014 1.014 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.015 0.985 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.388 0.612 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.028 0.972 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 -16.435 3.378 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.133 4.133 11 C -0.061 4.061 12 N -0.232 5.232 13 C -0.061 4.061 14 H 0.124 0.876 15 C -0.071 4.071 16 O -0.303 6.303 17 C -0.066 4.066 18 C 0.026 3.974 19 H 0.111 0.889 20 O -0.355 6.355 21 C -0.065 4.065 22 C -0.131 4.131 23 H 0.069 0.931 24 H 0.004 0.996 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.237 0.763 34 H 0.034 0.966 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.879 -15.855 3.624 16.288 hybrid contribution 0.059 0.817 -0.751 1.111 sum 0.937 -15.038 2.873 15.338 Atomic orbital electron populations 1.70007 1.07137 1.27115 1.51544 1.25745 0.95706 1.02337 0.94833 0.85684 0.78450 0.79169 0.78777 1.19723 1.20842 1.19727 1.21567 0.92944 0.92353 1.50389 0.93266 1.18665 0.93186 0.92657 0.92950 1.21493 0.97938 0.94226 0.99660 1.22254 0.95865 0.98905 0.89051 1.61924 1.21795 1.01085 1.38386 1.23329 0.95580 0.89725 0.97478 0.87553 1.24275 1.02260 0.81960 0.98621 1.89092 1.31627 1.22631 1.86927 1.24443 0.84401 1.01847 0.95952 1.23127 0.84092 0.91900 0.98272 0.88889 1.86819 1.15033 1.37936 1.95692 1.22137 0.93167 0.92014 0.99214 1.21392 0.99100 0.94648 0.97993 0.93073 0.99550 0.93386 0.93438 0.88048 0.96728 0.92190 0.88518 0.85978 0.91641 0.76277 0.96566 0.90800 0.95310 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.23 11.37 21.45 0.24 -53.99 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.53 -30.66 8.56 25.60 0.22 -30.44 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.30 2.16 -11.46 -0.02 2.28 16 10 C -0.10 -4.20 5.32 30.65 0.16 -4.03 16 11 C 0.07 2.42 4.24 86.32 0.37 2.78 16 12 N -0.51 -17.79 4.14 -865.21 -3.58 -21.37 16 13 C 0.05 1.32 3.16 45.93 0.15 1.46 16 14 H 0.11 2.66 7.96 -2.39 -0.02 2.64 16 15 C 0.01 0.19 6.61 72.48 0.48 0.67 16 16 O -0.38 -9.83 11.65 -148.98 -1.74 -11.56 16 17 C 0.01 0.20 7.37 72.49 0.53 0.73 16 18 C 0.09 1.80 4.20 31.61 0.13 1.93 16 19 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 20 O -0.55 -12.36 9.98 -148.98 -1.49 -13.85 16 21 C 0.06 2.46 5.28 86.33 0.46 2.92 16 22 C -0.09 -4.60 5.12 30.65 0.16 -4.44 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 25 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.10 3.29 5.59 -2.39 -0.01 3.28 16 28 H 0.01 0.56 5.96 -2.39 -0.01 0.54 16 29 H 0.06 1.83 5.15 -2.38 -0.01 1.82 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.28 8.09 -2.38 -0.02 1.26 16 33 H 0.39 4.72 9.11 -74.06 -0.67 4.05 16 34 H 0.02 0.65 7.89 -2.39 -0.02 0.63 16 35 H 0.07 2.62 8.00 -2.39 -0.02 2.60 16 36 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 3.41 6.17 -2.38 -0.01 3.39 16 Total: -1.00 -66.51 282.30 -1.07 -67.58 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.39 Total: 11.48 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 3.08 Total: -25.00 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -3.34 Total: -75.36 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -3.22 Total: -25.41 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -66.51 -1.07 -67.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397205031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.433 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds