Wall clock time and date at job start Mon Mar 30 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.62681 * 300.70259 * 9 7 2 11 11 C 1.55132 * 110.70549 * 63.80929 * 9 7 2 12 12 C 1.55110 * 101.56082 * 153.90552 * 11 9 7 13 13 N 1.47843 * 104.90661 * 323.15826 * 12 11 9 14 14 C 1.46899 * 111.00354 * 146.23789 * 13 12 11 15 15 C 1.53005 * 109.46993 * 69.15598 * 14 13 12 16 16 C 1.53001 * 112.99496 * 48.17837 * 15 14 13 17 17 O 1.42899 * 109.46790 * 179.97438 * 16 15 14 18 18 C 1.54028 * 113.81648 * 276.19024 * 15 14 13 19 19 O 1.44178 * 85.51687 * 223.19628 * 18 15 14 20 20 C 1.44170 * 93.33856 * 24.19367 * 19 18 15 21 21 C 1.47444 * 108.56597 * 23.97236 * 13 12 11 22 22 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 23 23 H 1.09000 * 110.98942 * 272.13211 * 11 9 7 24 24 H 1.09007 * 110.99235 * 35.94449 * 11 9 7 25 25 H 1.09002 * 110.42989 * 204.23666 * 12 11 9 26 26 H 1.09008 * 110.30830 * 82.01671 * 12 11 9 27 27 H 1.08999 * 109.47379 * 189.16010 * 14 13 12 28 28 H 1.09004 * 109.46803 * 309.16014 * 14 13 12 29 29 H 1.08999 * 109.46811 * 299.99334 * 16 15 14 30 30 H 1.08997 * 109.47340 * 59.99632 * 16 15 14 31 31 H 0.96698 * 114.00033 * 179.97438 * 17 16 15 32 32 H 1.08999 * 113.86901 * 337.34373 * 18 15 14 33 33 H 1.09003 * 113.86459 * 109.04969 * 18 15 14 34 34 H 1.09001 * 113.86699 * 221.65850 * 20 19 18 35 35 H 1.09006 * 113.86799 * 89.95718 * 20 19 18 36 36 H 1.09007 * 109.88940 * 239.60866 * 21 13 12 37 37 H 1.08997 * 109.89287 * 118.41851 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6083 -2.5715 0.8769 11 6 0.4217 -2.6537 -1.3024 12 6 0.3212 -4.1966 -1.4256 13 7 1.6283 -4.7018 -0.9545 14 6 1.4776 -5.9907 -0.2660 15 6 1.0915 -7.0687 -1.2808 16 6 1.9745 -7.0572 -2.5302 17 8 1.5505 -8.0896 -3.4227 18 6 -0.4178 -7.1266 -1.5829 19 8 -0.2650 -8.5577 -1.4974 20 6 0.9069 -8.4673 -0.6625 21 6 2.2273 -3.6928 -0.0616 22 1 -0.4849 -0.8401 0.0004 23 1 -0.5646 -2.2028 -1.1928 24 1 0.9509 -2.2287 -2.1553 25 1 0.1544 -4.4854 -2.4634 26 1 -0.4822 -4.5751 -0.7935 27 1 2.4201 -6.2607 0.2101 28 1 0.6981 -5.9089 0.4915 29 1 1.8897 -6.0903 -3.0261 30 1 3.0120 -7.2287 -2.2435 31 1 2.0670 -8.1408 -4.2386 32 1 -1.0416 -6.7020 -0.7964 33 1 -0.6822 -6.7700 -2.5784 34 1 1.6931 -9.1741 -0.9278 35 1 0.6876 -8.4521 0.4052 36 1 3.1873 -3.3665 -0.4620 37 1 2.3623 -4.1129 0.9350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397641552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:10 Heat of formation + Delta-G solvation = -59.745922 kcal Electronic energy + Delta-G solvation = -18240.088609 eV Core-core repulsion = 15404.557911 eV Total energy + Delta-G solvation = -2835.530698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78304 -38.09081 -36.26791 -33.85871 -31.78203 -29.14337 -28.42563 -26.46467 -25.61478 -24.57219 -23.70579 -20.18840 -19.85793 -18.89872 -17.40570 -16.98976 -16.14526 -15.98104 -15.56093 -14.66850 -14.58666 -14.21883 -13.83369 -13.66152 -13.03425 -12.72359 -12.33910 -12.18307 -11.89724 -11.54286 -11.39207 -11.10318 -10.89081 -10.74619 -10.44194 -10.20254 -10.12965 -9.86477 -9.78322 -9.63752 -9.44149 -8.54075 -8.38796 -7.82493 -6.37205 -4.09977 3.41166 3.44480 3.60187 3.75441 4.06263 4.24457 4.48802 4.54270 4.85646 5.19823 5.29397 5.32190 5.38271 5.48477 5.56123 5.62027 5.71648 5.78201 5.83360 5.94389 6.00885 6.05979 6.11151 6.13843 6.27252 6.35713 6.63194 6.85365 6.89996 7.18989 7.32598 7.57023 7.67101 7.68969 8.18009 8.39475 8.84258 9.61867 11.00472 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051507 B = 0.005241 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.488986 B = 5340.860630 C = 5420.104551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 1.070 2.930 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.591 4.591 8 H 0.051 0.949 9 C 0.018 3.982 10 H 0.019 0.981 11 C -0.119 4.119 12 C 0.039 3.961 13 N -0.530 5.530 14 C 0.059 3.941 15 C -0.117 4.117 16 C 0.108 3.892 17 O -0.567 6.567 18 C 0.050 3.950 19 O -0.368 6.368 20 C 0.048 3.952 21 C 0.055 3.945 22 H 0.271 0.729 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.374 0.626 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.942 -13.217 -3.125 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.184 4.184 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.629 4.629 8 H 0.069 0.931 9 C -0.001 4.001 10 H 0.037 0.963 11 C -0.158 4.158 12 C -0.089 4.089 13 N -0.254 5.254 14 C -0.070 4.070 15 C -0.118 4.118 16 C 0.031 3.969 17 O -0.372 6.372 18 C -0.026 4.026 19 O -0.286 6.286 20 C -0.030 4.030 21 C -0.072 4.072 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.495 -11.977 -3.171 12.638 hybrid contribution 0.203 -1.256 0.462 1.353 sum 2.698 -13.232 -2.709 13.774 Atomic orbital electron populations 1.70786 1.06890 1.30941 1.46370 1.25792 0.96533 1.02573 0.93541 0.83526 0.74728 0.75181 0.76714 1.21534 1.21038 1.21467 1.21915 0.94011 0.91117 1.55881 0.93095 1.19972 0.93318 0.93944 0.92869 0.96315 1.22917 1.00594 0.91346 1.00933 1.23180 0.89400 0.97413 0.98872 1.63622 1.22410 1.02301 1.37065 1.22267 1.00668 0.90101 0.93934 1.23653 0.96586 0.95430 0.96129 1.21644 0.95367 0.90896 0.89011 1.86571 1.61476 1.55978 1.33153 1.23993 0.94604 0.81959 1.02081 1.89680 1.47288 1.23031 1.68649 1.23888 0.88763 0.95563 0.94770 1.22881 0.99610 0.91770 0.92903 0.91696 0.92006 0.91706 0.91840 0.94790 0.90736 0.94178 0.91386 0.93444 0.78032 0.90756 0.89248 0.89372 0.90746 0.90914 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.85 13.45 55.43 0.75 -26.11 16 2 C 0.02 0.55 5.35 -17.82 -0.10 0.46 16 3 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.59 -16.11 8.48 -34.44 -0.29 -16.40 16 8 H 0.05 1.39 7.55 -52.48 -0.40 0.99 16 9 C 0.02 0.44 2.45 -89.95 -0.22 0.22 16 10 H 0.02 0.49 8.00 -51.93 -0.42 0.08 16 11 C -0.12 -2.65 5.78 -24.49 -0.14 -2.79 16 12 C 0.04 0.70 5.28 -2.19 -0.01 0.69 16 13 N -0.53 -9.23 4.23 -231.10 -0.98 -10.21 16 14 C 0.06 0.86 4.18 -3.82 -0.02 0.84 16 15 C -0.12 -1.56 0.97 -153.43 -0.15 -1.71 16 16 C 0.11 1.38 6.30 37.16 0.23 1.61 16 17 O -0.57 -7.04 12.10 -52.75 -0.64 -7.68 16 18 C 0.05 0.71 6.48 37.60 0.24 0.95 16 19 O -0.37 -5.69 11.59 -52.75 -0.61 -6.30 16 20 C 0.05 0.60 8.07 37.60 0.30 0.91 16 21 C 0.06 1.12 6.45 -2.83 -0.02 1.10 16 22 H 0.27 7.85 5.44 -40.82 -0.22 7.63 16 23 H 0.06 1.44 6.60 -51.93 -0.34 1.10 16 24 H 0.06 1.53 8.04 -51.93 -0.42 1.12 16 25 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 26 H 0.03 0.59 6.70 -51.92 -0.35 0.24 16 27 H 0.07 1.01 8.03 -51.93 -0.42 0.59 16 28 H 0.04 0.60 7.64 -51.93 -0.40 0.20 16 29 H 0.07 0.94 7.60 -51.93 -0.39 0.55 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.37 2.94 9.12 45.56 0.42 3.36 16 32 H 0.07 1.01 7.43 -51.93 -0.39 0.62 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.07 1.54 7.64 -51.92 -0.40 1.15 16 37 H 0.03 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -30.71 290.26 -7.36 -38.07 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.01 Total: 2.30 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.16 Total: -14.11 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: -0.23 Total: -36.31 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.25 Total: -13.98 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.71 -7.36 -38.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.677 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds