Wall clock time and date at job start Mon Mar 30 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.62681 * 300.70259 * 9 7 2 11 11 C 1.55132 * 110.70549 * 63.80929 * 9 7 2 12 12 C 1.55110 * 101.56082 * 153.90552 * 11 9 7 13 13 N 1.47843 * 104.90661 * 323.15826 * 12 11 9 14 14 C 1.46899 * 111.00354 * 146.23789 * 13 12 11 15 15 C 1.53005 * 109.46993 * 69.15598 * 14 13 12 16 16 C 1.53001 * 112.99496 * 48.17837 * 15 14 13 17 17 O 1.42899 * 109.46790 * 179.97438 * 16 15 14 18 18 C 1.54028 * 113.81648 * 276.19024 * 15 14 13 19 19 O 1.44178 * 85.51687 * 223.19628 * 18 15 14 20 20 C 1.44170 * 93.33856 * 24.19367 * 19 18 15 21 21 C 1.47444 * 108.56597 * 23.97236 * 13 12 11 22 22 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 23 23 H 1.09000 * 110.98942 * 272.13211 * 11 9 7 24 24 H 1.09007 * 110.99235 * 35.94449 * 11 9 7 25 25 H 1.09002 * 110.42989 * 204.23666 * 12 11 9 26 26 H 1.09008 * 110.30830 * 82.01671 * 12 11 9 27 27 H 1.08999 * 109.47379 * 189.16010 * 14 13 12 28 28 H 1.09004 * 109.46803 * 309.16014 * 14 13 12 29 29 H 1.08999 * 109.46811 * 299.99334 * 16 15 14 30 30 H 1.08997 * 109.47340 * 59.99632 * 16 15 14 31 31 H 0.96698 * 114.00033 * 179.97438 * 17 16 15 32 32 H 1.08999 * 113.86901 * 337.34373 * 18 15 14 33 33 H 1.09003 * 113.86459 * 109.04969 * 18 15 14 34 34 H 1.09001 * 113.86699 * 221.65850 * 20 19 18 35 35 H 1.09006 * 113.86799 * 89.95718 * 20 19 18 36 36 H 1.09007 * 109.88940 * 239.60866 * 21 13 12 37 37 H 1.08997 * 109.89287 * 118.41851 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6083 -2.5715 0.8769 11 6 0.4217 -2.6537 -1.3024 12 6 0.3212 -4.1966 -1.4256 13 7 1.6283 -4.7018 -0.9545 14 6 1.4776 -5.9907 -0.2660 15 6 1.0915 -7.0687 -1.2808 16 6 1.9745 -7.0572 -2.5302 17 8 1.5505 -8.0896 -3.4227 18 6 -0.4178 -7.1266 -1.5829 19 8 -0.2650 -8.5577 -1.4974 20 6 0.9069 -8.4673 -0.6625 21 6 2.2273 -3.6928 -0.0616 22 1 -0.4849 -0.8401 0.0004 23 1 -0.5646 -2.2028 -1.1928 24 1 0.9509 -2.2287 -2.1553 25 1 0.1544 -4.4854 -2.4634 26 1 -0.4822 -4.5751 -0.7935 27 1 2.4201 -6.2607 0.2101 28 1 0.6981 -5.9089 0.4915 29 1 1.8897 -6.0903 -3.0261 30 1 3.0120 -7.2287 -2.2435 31 1 2.0670 -8.1408 -4.2386 32 1 -1.0416 -6.7020 -0.7964 33 1 -0.6822 -6.7700 -2.5784 34 1 1.6931 -9.1741 -0.9278 35 1 0.6876 -8.4521 0.4052 36 1 3.1873 -3.3665 -0.4620 37 1 2.3623 -4.1129 0.9350 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397641552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:10 Heat of formation + Delta-G solvation = -82.261879 kcal Electronic energy + Delta-G solvation = -18241.064974 eV Core-core repulsion = 15404.557911 eV Total energy + Delta-G solvation = -2836.507063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87659 -39.65495 -37.22114 -35.65090 -33.32648 -30.62753 -30.13171 -27.53304 -26.70447 -26.20401 -25.32815 -21.81043 -21.62115 -19.93746 -19.02345 -18.38691 -17.28582 -17.10743 -16.88682 -15.93609 -15.92958 -15.65523 -15.44584 -15.04330 -14.50282 -14.23008 -13.80834 -13.46802 -13.33355 -13.21204 -12.81055 -12.69162 -12.37528 -12.23244 -11.93979 -11.75320 -11.67510 -11.60523 -11.21123 -10.75887 -10.58668 -10.50374 -10.48057 -9.28044 -8.58043 -6.31460 1.54039 1.61996 1.79491 2.57841 2.71603 2.89124 3.20683 3.22611 3.39516 3.75759 3.98602 4.07856 4.13468 4.31150 4.34569 4.41262 4.43220 4.55323 4.57455 4.61971 4.71852 4.80220 4.81879 4.88860 5.02866 5.05284 5.11418 5.17677 5.25164 5.36168 5.49910 5.97953 6.10318 6.16394 6.23814 6.66379 6.96875 7.48279 8.80490 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.051507 B = 0.005241 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.488986 B = 5340.860630 C = 5420.104551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.030 4.030 3 Si 1.114 2.886 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.006 3.994 10 H -0.007 1.007 11 C -0.113 4.113 12 C 0.054 3.946 13 N -0.525 5.525 14 C 0.061 3.939 15 C -0.113 4.113 16 C 0.113 3.887 17 O -0.581 6.581 18 C 0.047 3.953 19 O -0.392 6.392 20 C 0.052 3.948 21 C 0.067 3.933 22 H 0.262 0.738 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.393 0.607 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -14.334 -3.179 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.228 4.228 3 Si 0.937 3.063 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.013 4.013 10 H 0.011 0.989 11 C -0.152 4.152 12 C -0.074 4.074 13 N -0.249 5.249 14 C -0.068 4.068 15 C -0.114 4.114 16 C 0.035 3.965 17 O -0.389 6.389 18 C -0.030 4.030 19 O -0.311 6.311 20 C -0.025 4.025 21 C -0.060 4.060 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.242 0.758 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.594 -13.128 -3.235 13.990 hybrid contribution -0.138 -0.972 0.475 1.091 sum 3.456 -14.100 -2.760 14.778 Atomic orbital electron populations 1.70891 1.07843 1.30514 1.48537 1.27154 0.96623 1.06211 0.92831 0.82952 0.74239 0.71580 0.77530 1.20138 1.21174 1.19645 1.22299 0.94133 0.92690 1.55025 0.93439 1.19987 0.94004 0.94682 0.92610 0.98887 1.22701 0.98841 0.94552 0.99095 1.23049 0.90110 0.93967 1.00248 1.63607 1.21810 1.02691 1.36749 1.22345 1.01654 0.88589 0.94186 1.23614 0.96077 0.95450 0.96279 1.21553 0.95785 0.90426 0.88735 1.86526 1.62363 1.55689 1.34272 1.24041 0.95313 0.81615 1.02014 1.89661 1.48384 1.23588 1.69426 1.24050 0.88101 0.94963 0.95387 1.22636 0.98186 0.91067 0.94121 0.92716 0.93885 0.93595 0.90091 0.93869 0.89096 0.94141 0.92664 0.92232 0.75844 0.90386 0.89717 0.88295 0.89062 0.91792 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.38 13.45 21.45 0.29 -56.10 16 2 C -0.03 -1.67 5.35 84.65 0.45 -1.22 16 3 Si 1.11 49.65 29.90 68.60 2.05 51.70 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.60 -33.21 8.48 25.60 0.22 -33.00 16 8 H 0.05 2.58 7.55 -2.91 -0.02 2.56 16 9 C 0.01 0.32 2.45 -10.36 -0.03 0.29 16 10 H -0.01 -0.37 8.00 -2.39 -0.02 -0.39 16 11 C -0.11 -5.11 5.78 32.05 0.19 -4.92 16 12 C 0.05 1.88 5.28 86.84 0.46 2.34 16 13 N -0.52 -17.32 4.23 -885.08 -3.74 -21.07 16 14 C 0.06 1.59 4.18 86.30 0.36 1.95 16 15 C -0.11 -2.73 0.97 -51.48 -0.05 -2.78 16 16 C 0.11 2.58 6.30 71.98 0.45 3.04 16 17 O -0.58 -13.04 12.10 -132.22 -1.60 -14.64 16 18 C 0.05 1.23 6.48 72.27 0.47 1.70 16 19 O -0.39 -11.28 11.59 -132.22 -1.53 -12.81 16 20 C 0.05 1.16 8.07 72.27 0.58 1.74 16 21 C 0.07 2.67 6.45 86.65 0.56 3.23 16 22 H 0.26 15.69 5.44 -92.71 -0.50 15.18 16 23 H 0.04 2.07 6.60 -2.39 -0.02 2.05 16 24 H 0.05 2.21 8.04 -2.38 -0.02 2.19 16 25 H 0.08 2.58 8.09 -2.39 -0.02 2.56 16 26 H 0.04 1.44 6.70 -2.38 -0.02 1.42 16 27 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 28 H 0.04 1.09 7.64 -2.38 -0.02 1.07 16 29 H 0.06 1.41 7.60 -2.39 -0.02 1.39 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.39 5.25 9.12 -74.06 -0.68 4.58 16 32 H 0.08 1.96 7.43 -2.39 -0.02 1.95 16 33 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.09 1.72 8.10 -2.38 -0.02 1.70 16 36 H 0.06 2.65 7.64 -2.38 -0.02 2.63 16 37 H 0.05 1.73 7.55 -2.39 -0.02 1.71 16 Total: -1.00 -65.63 290.26 -0.23 -65.86 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.64 Total: 14.69 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 3.66 Total: -27.63 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.45 Total: -77.16 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -3.13 Total: -27.46 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -65.63 -0.23 -65.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.406 kcal (2) G-P(sol) polarization free energy of solvation -65.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds