Wall clock time and date at job start Mon Mar 30 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48493 * 109.47399 * 239.99921 * 3 2 1 5 5 H 1.48504 * 109.46578 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47041 * 119.99527 * 3 2 1 7 7 C 1.37880 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00312 * 180.02562 * 7 2 1 9 9 C 1.50712 * 119.99643 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.28406 * 60.67503 * 9 7 2 11 11 C 1.54257 * 110.32186 * 298.54459 * 9 7 2 12 12 C 1.54381 * 105.14978 * 241.05248 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.53001 * 109.46857 * 54.49058 * 14 13 12 16 16 C 1.53005 * 112.99842 * 48.17354 * 15 14 13 17 17 O 1.42898 * 109.46997 * 179.97438 * 16 15 14 18 18 C 1.54035 * 113.81660 * 276.18875 * 15 14 13 19 19 O 1.44182 * 85.51787 * 223.19096 * 18 15 14 20 20 C 1.44180 * 93.33529 * 24.19777 * 19 18 15 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.97001 * 119.99874 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.32715 * 0.02562 * 11 9 7 24 24 H 1.08998 * 110.32251 * 122.10830 * 11 9 7 25 25 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 26 26 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 27 27 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 28 28 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 29 29 H 1.08998 * 109.47154 * 300.00089 * 16 15 14 30 30 H 1.09003 * 109.46898 * 60.00203 * 16 15 14 31 31 H 0.96703 * 114.00221 * 179.97438 * 17 16 15 32 32 H 1.08999 * 113.86899 * 337.34227 * 18 15 14 33 33 H 1.09001 * 113.86629 * 109.04727 * 18 15 14 34 34 H 1.09001 * 113.85701 * 221.65633 * 20 19 18 35 35 H 1.08996 * 113.98850 * 89.96388 * 20 19 18 36 36 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 37 37 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6288 -2.5763 -0.8910 11 6 0.3840 -2.6173 1.2709 12 6 0.9145 -3.8664 2.0068 13 7 1.5546 -4.6830 0.9414 14 6 2.5209 -5.6305 1.5127 15 6 1.8319 -6.4776 2.5843 16 6 0.4946 -7.0577 2.1194 17 8 -0.0808 -7.8324 3.1734 18 6 1.7729 -5.8029 3.9678 19 8 2.1437 -7.0953 4.4884 20 6 2.7592 -7.5102 3.2524 21 6 2.2350 -3.6864 0.0746 22 1 -0.4850 0.8401 -0.0004 23 1 0.5031 -1.7311 1.8943 24 1 -0.6639 -2.7523 1.0030 25 1 1.6494 -3.5806 2.7595 26 1 0.0922 -4.4148 2.4662 27 1 2.9017 -6.2806 0.7249 28 1 3.3481 -5.0800 1.9610 29 1 -0.1816 -6.2449 1.8545 30 1 0.6573 -7.6934 1.2489 31 1 -0.9326 -8.2312 2.9485 32 1 2.5308 -5.0337 4.1161 33 1 0.7732 -5.4805 4.2590 34 1 2.5418 -8.5420 2.9762 35 1 3.8184 -7.2635 3.1802 36 1 2.4063 -4.1008 -0.9189 37 1 3.1770 -3.3721 0.5239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397641556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:12 Heat of formation + Delta-G solvation = -55.022307 kcal Electronic energy + Delta-G solvation = -18307.972845 eV Core-core repulsion = 15472.646978 eV Total energy + Delta-G solvation = -2835.325866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78121 -37.84429 -36.22437 -33.59919 -31.76080 -29.24783 -28.32931 -26.39873 -25.58843 -24.87411 -23.56002 -20.19504 -19.47342 -18.78601 -17.30506 -16.32773 -16.16682 -15.92840 -15.08259 -15.00876 -14.60604 -14.41241 -14.06519 -13.46292 -12.91168 -12.63429 -12.30507 -12.23893 -11.64069 -11.31160 -11.11920 -11.04032 -10.89812 -10.65200 -10.46986 -10.29142 -10.15829 -9.76971 -9.72254 -9.44754 -9.25074 -8.77222 -8.40571 -7.89431 -6.04757 -4.09017 3.28968 3.34245 3.36277 3.80119 4.13173 4.27893 4.39816 4.64877 4.89903 5.22373 5.28813 5.35407 5.44858 5.56116 5.61970 5.72410 5.80525 5.83113 5.88968 6.05230 6.12948 6.17954 6.24149 6.32283 6.36641 6.51297 6.82413 7.05800 7.13824 7.48081 7.63402 7.65744 7.72462 7.85399 7.96370 8.42221 8.93757 9.55279 11.04322 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.005572 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.273379 B = 5023.814874 C = 5128.005185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.049 3.951 10 H 0.033 0.967 11 C -0.092 4.092 12 C 0.028 3.972 13 N -0.514 5.514 14 C 0.053 3.947 15 C -0.121 4.121 16 C 0.105 3.895 17 O -0.567 6.567 18 C 0.050 3.950 19 O -0.369 6.369 20 C 0.049 3.951 21 C 0.040 3.960 22 H 0.261 0.739 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.374 0.626 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 -12.508 4.040 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.030 3.970 10 H 0.051 0.949 11 C -0.131 4.131 12 C -0.100 4.100 13 N -0.238 5.238 14 C -0.076 4.076 15 C -0.121 4.121 16 C 0.027 3.973 17 O -0.371 6.371 18 C -0.027 4.027 19 O -0.287 6.287 20 C -0.029 4.029 21 C -0.087 4.087 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.220 0.780 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.929 -12.642 4.301 13.492 hybrid contribution 0.665 1.382 -0.079 1.535 sum 2.595 -11.260 4.222 12.302 Atomic orbital electron populations 1.69974 1.05846 1.26654 1.50005 1.24963 0.94838 0.98993 0.95093 0.86699 0.79644 0.83302 0.78595 1.20271 1.21271 1.20349 1.21159 0.92649 0.90478 1.51372 0.92815 1.19357 0.92261 0.90951 0.94429 0.94911 1.22201 0.98502 0.93996 0.98369 1.23344 0.97532 0.95449 0.93641 1.65478 1.26624 1.15260 1.16482 1.22256 0.94000 0.95389 0.95999 1.23687 0.96164 0.96200 0.96068 1.21739 0.92868 0.94343 0.88323 1.86573 1.39556 1.69993 1.40991 1.24077 1.01084 0.86998 0.90505 1.89683 1.76395 1.29039 1.33616 1.23867 0.96156 0.99235 0.83633 1.23311 0.97127 0.92711 0.95551 0.92935 0.91502 0.93694 0.94893 0.91955 0.90699 0.94155 0.91298 0.93329 0.78012 0.90631 0.89113 0.89434 0.90729 0.92103 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.08 12.35 55.43 0.68 -24.40 16 2 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.89 8.37 -34.43 -0.29 -14.18 16 8 H 0.05 1.42 7.58 -52.49 -0.40 1.02 16 9 C 0.05 1.20 2.99 -90.39 -0.27 0.93 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.09 -2.10 5.75 -25.35 -0.15 -2.25 16 12 C 0.03 0.52 4.53 -2.09 -0.01 0.51 16 13 N -0.51 -9.11 4.75 -229.82 -1.09 -10.20 16 14 C 0.05 0.77 4.68 -3.82 -0.02 0.75 16 15 C -0.12 -1.64 0.75 -153.43 -0.12 -1.76 16 16 C 0.10 1.36 6.17 37.16 0.23 1.59 16 17 O -0.57 -7.18 12.10 -52.76 -0.64 -7.82 16 18 C 0.05 0.73 5.91 37.61 0.22 0.95 16 19 O -0.37 -5.81 11.59 -52.76 -0.61 -6.43 16 20 C 0.05 0.62 8.07 37.61 0.30 0.93 16 21 C 0.04 0.81 6.02 -2.18 -0.01 0.80 16 22 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 23 H 0.07 1.69 7.23 -51.93 -0.38 1.31 16 24 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.61 6.85 -51.93 -0.36 0.25 16 26 H 0.06 1.07 5.79 -51.93 -0.30 0.77 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 29 H 0.07 0.98 6.07 -51.93 -0.32 0.66 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.37 3.04 9.12 45.56 0.42 3.45 16 32 H 0.08 1.07 7.53 -51.93 -0.39 0.67 16 33 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 34 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.73 7.38 -51.93 -0.38 0.35 16 LS Contribution 288.01 15.07 4.34 4.34 Total: -1.00 -29.64 288.01 -7.52 -37.16 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.99 Total: 1.51 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.20 Total: -10.10 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.41 Total: -34.60 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.25 Total: -14.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.64 -7.52 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.862 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds