Wall clock time and date at job start Mon Mar 30 2020 03:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48493 * 109.47399 * 239.99921 * 3 2 1 5 5 H 1.48504 * 109.46578 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47041 * 119.99527 * 3 2 1 7 7 C 1.37880 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00312 * 180.02562 * 7 2 1 9 9 C 1.50712 * 119.99643 * 0.02562 * 7 2 1 10 10 H 1.08995 * 110.28406 * 60.67503 * 9 7 2 11 11 C 1.54257 * 110.32186 * 298.54459 * 9 7 2 12 12 C 1.54381 * 105.14978 * 241.05248 * 11 9 7 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.53001 * 109.46857 * 54.49058 * 14 13 12 16 16 C 1.53005 * 112.99842 * 48.17354 * 15 14 13 17 17 O 1.42898 * 109.46997 * 179.97438 * 16 15 14 18 18 C 1.54035 * 113.81660 * 276.18875 * 15 14 13 19 19 O 1.44182 * 85.51787 * 223.19096 * 18 15 14 20 20 C 1.44180 * 93.33529 * 24.19777 * 19 18 15 21 21 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 22 22 H 0.97001 * 119.99874 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.32715 * 0.02562 * 11 9 7 24 24 H 1.08998 * 110.32251 * 122.10830 * 11 9 7 25 25 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 26 26 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 27 27 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 28 28 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 29 29 H 1.08998 * 109.47154 * 300.00089 * 16 15 14 30 30 H 1.09003 * 109.46898 * 60.00203 * 16 15 14 31 31 H 0.96703 * 114.00221 * 179.97438 * 17 16 15 32 32 H 1.08999 * 113.86899 * 337.34227 * 18 15 14 33 33 H 1.09001 * 113.86629 * 109.04727 * 18 15 14 34 34 H 1.09001 * 113.85701 * 221.65633 * 20 19 18 35 35 H 1.08996 * 113.98850 * 89.96388 * 20 19 18 36 36 H 1.08999 * 110.41133 * 201.79165 * 21 13 12 37 37 H 1.09001 * 110.41003 * 79.35561 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6288 -2.5763 -0.8910 11 6 0.3840 -2.6173 1.2709 12 6 0.9145 -3.8664 2.0068 13 7 1.5546 -4.6830 0.9414 14 6 2.5209 -5.6305 1.5127 15 6 1.8319 -6.4776 2.5843 16 6 0.4946 -7.0577 2.1194 17 8 -0.0808 -7.8324 3.1734 18 6 1.7729 -5.8029 3.9678 19 8 2.1437 -7.0953 4.4884 20 6 2.7592 -7.5102 3.2524 21 6 2.2350 -3.6864 0.0746 22 1 -0.4850 0.8401 -0.0004 23 1 0.5031 -1.7311 1.8943 24 1 -0.6639 -2.7523 1.0030 25 1 1.6494 -3.5806 2.7595 26 1 0.0922 -4.4148 2.4662 27 1 2.9017 -6.2806 0.7249 28 1 3.3481 -5.0800 1.9610 29 1 -0.1816 -6.2449 1.8545 30 1 0.6573 -7.6934 1.2489 31 1 -0.9326 -8.2312 2.9485 32 1 2.5308 -5.0337 4.1161 33 1 0.7732 -5.4805 4.2590 34 1 2.5418 -8.5420 2.9762 35 1 3.8184 -7.2635 3.1802 36 1 2.4063 -4.1008 -0.9189 37 1 3.1770 -3.3721 0.5239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397641556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:11 Heat of formation + Delta-G solvation = -77.243640 kcal Electronic energy + Delta-G solvation = -18308.936434 eV Core-core repulsion = 15472.646978 eV Total energy + Delta-G solvation = -2836.289456 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89488 -39.40471 -37.20228 -35.35770 -33.38342 -30.73457 -30.02636 -27.52272 -26.79345 -26.41401 -25.12443 -21.73602 -21.28639 -19.87635 -18.50649 -18.08319 -17.37380 -17.08823 -16.61110 -16.43659 -16.14124 -15.59068 -15.51071 -14.81701 -14.38119 -14.15387 -13.89807 -13.31457 -13.05959 -12.97205 -12.83738 -12.60784 -12.44597 -12.25700 -12.09034 -11.72296 -11.62337 -11.44800 -11.05417 -10.81768 -10.69446 -10.48542 -10.45353 -9.34599 -8.13272 -6.24099 1.41889 1.42451 1.50164 2.42144 2.74939 2.99653 3.17922 3.26545 3.45429 3.75966 4.12852 4.15035 4.29733 4.36136 4.42438 4.51534 4.59010 4.61374 4.63786 4.70975 4.81008 4.86278 4.95024 5.06489 5.06914 5.13396 5.27584 5.28432 5.34253 5.62019 5.74649 5.89349 5.96934 6.23208 6.40699 6.87226 6.98106 7.43829 8.95393 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.044485 B = 0.005572 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.273379 B = 5023.814874 C = 5128.005185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.039 3.961 10 H -0.002 1.002 11 C -0.085 4.085 12 C 0.044 3.956 13 N -0.511 5.511 14 C 0.055 3.945 15 C -0.118 4.118 16 C 0.109 3.891 17 O -0.580 6.580 18 C 0.046 3.954 19 O -0.393 6.393 20 C 0.054 3.946 21 C 0.052 3.948 22 H 0.261 0.739 23 H 0.036 0.964 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.393 0.607 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -13.620 4.304 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.124 4.124 12 C -0.084 4.084 13 N -0.235 5.235 14 C -0.074 4.074 15 C -0.118 4.118 16 C 0.031 3.969 17 O -0.388 6.388 18 C -0.031 4.031 19 O -0.311 6.311 20 C -0.023 4.023 21 C -0.075 4.075 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.242 0.758 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.212 -13.777 4.563 14.864 hybrid contribution 0.233 1.678 -0.167 1.702 sum 3.445 -12.099 4.396 13.326 Atomic orbital electron populations 1.70102 1.07262 1.27328 1.50958 1.25739 0.95617 1.02384 0.94829 0.85695 0.78422 0.79189 0.78865 1.19557 1.21122 1.19660 1.21520 0.92887 0.91781 1.50994 0.92750 1.19339 0.92947 0.92199 0.93530 0.98359 1.21987 0.97594 0.95021 0.97811 1.23160 0.98136 0.93727 0.93349 1.65448 1.27399 1.14515 1.16138 1.22332 0.93300 0.94841 0.96880 1.23661 0.96867 0.96298 0.95020 1.21651 0.92222 0.94219 0.88805 1.86529 1.41007 1.70009 1.41236 1.24109 1.00819 0.86938 0.91234 1.89664 1.76920 1.29473 1.35088 1.24036 0.96830 0.99551 0.81888 1.23068 0.95843 0.91784 0.96826 0.93054 0.94467 0.95275 0.94446 0.90242 0.88681 0.93904 0.92799 0.91930 0.75838 0.90337 0.89856 0.88294 0.88860 0.91046 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.13 12.35 21.45 0.26 -52.87 16 2 C 0.01 0.74 5.09 84.65 0.43 1.17 16 3 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -28.91 8.37 25.60 0.21 -28.70 16 8 H 0.05 2.87 7.58 -2.91 -0.02 2.85 16 9 C 0.04 1.93 2.99 -10.64 -0.03 1.90 16 10 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 11 C -0.09 -3.99 5.75 31.49 0.18 -3.81 16 12 C 0.04 1.59 4.53 86.42 0.39 1.98 16 13 N -0.51 -17.22 4.75 -881.03 -4.19 -21.40 16 14 C 0.05 1.44 4.68 86.30 0.40 1.85 16 15 C -0.12 -2.89 0.75 -51.48 -0.04 -2.93 16 16 C 0.11 2.56 6.17 71.98 0.44 3.00 16 17 O -0.58 -13.40 12.10 -132.22 -1.60 -15.00 16 18 C 0.05 1.24 5.91 72.27 0.43 1.67 16 19 O -0.39 -11.52 11.59 -132.22 -1.53 -13.06 16 20 C 0.05 1.21 8.07 72.27 0.58 1.79 16 21 C 0.05 2.07 6.02 86.45 0.52 2.59 16 22 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 23 H 0.04 1.92 7.23 -2.39 -0.02 1.91 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.33 6.85 -2.38 -0.02 1.31 16 26 H 0.08 2.64 5.79 -2.39 -0.01 2.62 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.14 7.67 -2.39 -0.02 1.12 16 29 H 0.05 1.43 6.07 -2.39 -0.01 1.42 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.39 5.52 9.12 -74.06 -0.68 4.85 16 32 H 0.08 2.07 7.53 -2.39 -0.02 2.05 16 33 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 34 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.03 1.38 7.38 -2.39 -0.02 1.36 16 Total: -1.00 -63.48 288.01 -1.12 -64.60 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.38 Total: 12.07 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.53 Total: -19.48 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -3.92 Total: -74.27 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -3.13 Total: -28.06 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -63.48 -1.12 -64.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397641556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.647 kcal (2) G-P(sol) polarization free energy of solvation -63.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds