Wall clock time and date at job start Mon Mar 30 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.30657 * 52.82650 * 4 3 2 6 6 C 1.54393 * 110.34333 * 290.53575 * 4 3 2 7 7 N 1.48141 * 104.61918 * 217.26525 * 6 4 3 8 8 C 1.34773 * 127.83866 * 219.60876 * 7 6 4 9 9 O 1.21688 * 120.00476 * 179.97438 * 8 7 6 10 10 C 1.46382 * 119.99878 * 359.96641 * 8 7 6 11 11 H 1.07996 * 119.99821 * 0.02562 * 10 8 7 12 12 C 1.40051 * 119.99962 * 179.97438 * 10 8 7 13 13 N 1.30672 * 119.99735 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99950 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46828 * 90.00266 * 14 12 10 16 16 H 1.48496 * 109.47139 * 210.00170 * 14 12 10 17 17 H 1.48496 * 109.47180 * 330.00641 * 14 12 10 18 18 C 1.48143 * 104.32442 * 39.58377 * 7 6 4 19 19 C 1.54286 * 110.34311 * 175.00105 * 4 3 2 20 20 C 1.53001 * 110.33964 * 237.74072 * 19 4 3 21 21 C 1.52993 * 110.34027 * 359.97438 * 19 4 3 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 24 24 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 26 26 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 27 27 H 1.09007 * 110.40515 * 336.05230 * 6 4 3 28 28 H 1.09000 * 110.40620 * 98.47567 * 6 4 3 29 29 H 0.97004 * 119.99654 * 179.97438 * 13 12 10 30 30 H 1.08997 * 110.40826 * 201.63307 * 18 7 6 31 31 H 1.09001 * 110.40829 * 79.20167 * 18 7 6 32 32 H 1.08995 * 109.47398 * 60.00058 * 20 19 4 33 33 H 1.09002 * 109.46547 * 179.97438 * 20 19 4 34 34 H 1.08999 * 109.47349 * 299.99675 * 20 19 4 35 35 H 1.09001 * 109.47810 * 60.00047 * 21 19 4 36 36 H 1.09004 * 109.47366 * 180.02562 * 21 19 4 37 37 H 1.09002 * 109.47601 * 300.00041 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8635 0.5391 -0.8154 6 6 4.0310 0.6357 1.3547 7 7 5.2925 1.3672 1.6157 8 6 6.4342 0.8840 2.1442 9 8 7.3927 1.6181 2.2965 10 6 6.5213 -0.5239 2.5351 11 1 5.6708 -1.1755 2.3997 12 6 7.7080 -1.0262 3.0838 13 7 8.7372 -0.2378 3.2471 14 14 7.8194 -2.8231 3.5820 15 1 8.3035 -3.6268 2.4310 16 1 8.7661 -2.9642 4.7174 17 1 6.4771 -3.3067 3.9937 18 6 5.0144 2.7503 1.1635 19 6 4.1840 2.5788 -0.1267 20 6 5.0935 2.6332 -1.3559 21 6 3.1059 3.6609 -0.2136 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.3021 0.8433 2.1382 28 1 4.2202 -0.4355 1.2846 29 1 9.5590 -0.5856 3.6275 30 1 5.9457 3.2745 0.9491 31 1 4.4392 3.2882 1.9171 32 1 4.5060 2.4321 -2.2517 33 1 5.5432 3.6232 -1.4314 34 1 5.8787 1.8833 -1.2603 35 1 2.4913 3.6348 0.6863 36 1 3.5790 4.6389 -0.3026 37 1 2.4791 3.4801 -1.0869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:00 Heat of formation + Delta-G solvation = -86.166391 kcal Electronic energy + Delta-G solvation = -18190.524268 eV Core-core repulsion = 15353.847893 eV Total energy + Delta-G solvation = -2836.676375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54553 -37.40486 -36.11573 -32.74965 -32.33589 -30.47412 -27.35376 -27.00114 -26.63711 -24.68671 -24.47814 -21.60349 -19.27530 -18.25139 -16.61112 -16.39555 -15.78549 -15.44599 -15.16334 -14.32608 -14.17460 -13.86977 -13.65476 -13.31862 -12.61832 -12.54852 -12.29127 -11.84544 -11.75294 -11.52179 -11.27045 -11.16182 -11.03875 -11.00995 -10.80991 -10.44189 -10.27344 -10.17961 -10.08255 -9.94458 -9.49873 -8.82503 -7.60314 -7.20545 -6.16884 -4.60553 3.16795 3.23364 3.27379 3.82000 4.11889 4.56817 4.61623 4.90842 4.95906 5.07421 5.26265 5.28288 5.40381 5.46929 5.56577 5.62223 5.69888 5.75147 5.80246 5.84330 5.96206 6.03844 6.10588 6.21988 6.40327 6.44939 6.50190 6.66129 6.70657 6.73235 7.24645 7.35339 7.48107 8.15527 8.47235 9.05503 9.57031 10.60992 10.80141 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.007288 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.990241 B = 3841.011198 C = 4732.111576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.071 3.929 4 C -0.095 4.095 5 H 0.084 0.916 6 C 0.127 3.873 7 N -0.645 5.645 8 C 0.577 3.423 9 O -0.577 6.577 10 C -0.538 4.538 11 H 0.070 0.930 12 C 0.087 3.913 13 N -0.769 5.769 14 Si 0.908 3.092 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.119 3.881 19 C -0.074 4.074 20 C -0.132 4.132 21 C -0.141 4.141 22 H 0.083 0.917 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 2.766 -7.209 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C -0.005 4.005 4 C -0.115 4.115 5 H 0.102 0.898 6 C 0.002 3.998 7 N -0.384 5.384 8 C 0.384 3.616 9 O -0.460 6.460 10 C -0.575 4.575 11 H 0.088 0.912 12 C -0.133 4.133 13 N -0.398 5.398 14 Si 0.732 3.268 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.006 4.006 19 C -0.075 4.075 20 C -0.189 4.189 21 C -0.198 4.198 22 H 0.101 0.899 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.407 2.981 -6.984 15.408 hybrid contribution -0.323 -0.658 0.206 0.762 sum -13.730 2.323 -6.778 15.487 Atomic orbital electron populations 1.22692 0.81707 1.02447 0.99563 1.87926 1.19045 1.28519 1.95310 1.22808 0.93737 0.84098 0.99881 1.22216 0.91983 0.96875 1.00392 0.89758 1.21946 0.86833 0.97972 0.93024 1.49236 1.13107 1.08077 1.67972 1.18005 0.78557 0.88681 0.76370 1.90607 1.35835 1.60430 1.59106 1.20889 0.99503 0.93351 1.43711 0.91189 1.25726 0.94992 0.98888 0.93649 1.70029 1.02020 1.35444 1.32325 0.86368 0.78850 0.82985 0.78579 1.19700 1.20444 1.18830 1.21997 0.98270 0.87788 0.92528 1.21480 0.95416 0.93725 0.96856 1.21802 0.99241 1.02018 0.95858 1.21955 0.98188 0.98303 1.01397 0.89889 0.94524 0.94295 0.93189 0.93086 0.93531 0.90364 0.92115 0.91022 0.93589 0.93170 0.92772 0.91925 0.92422 0.92525 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.46 10.60 -35.23 -0.37 -5.84 16 3 C 0.07 0.93 4.07 37.16 0.15 1.08 16 4 C -0.10 -1.51 2.98 -89.22 -0.27 -1.77 16 5 H 0.08 1.39 7.71 -51.93 -0.40 0.99 16 6 C 0.13 2.50 6.32 -2.41 -0.02 2.48 16 7 N -0.65 -15.35 3.32 -170.96 -0.57 -15.91 16 8 C 0.58 17.07 7.84 -12.99 -0.10 16.97 16 9 O -0.58 -19.29 15.29 5.20 0.08 -19.21 16 10 C -0.54 -15.65 9.07 -35.63 -0.32 -15.97 16 11 H 0.07 1.89 6.50 -52.49 -0.34 1.55 16 12 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 13 N -0.77 -23.48 11.83 55.55 0.66 -22.83 16 14 Si 0.91 20.60 29.56 -169.99 -5.02 15.58 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.26 -5.82 7.11 56.52 0.40 -5.41 16 18 C 0.12 2.33 6.14 -2.41 -0.01 2.32 16 19 C -0.07 -1.12 1.03 -153.11 -0.16 -1.28 16 20 C -0.13 -1.96 8.24 37.16 0.31 -1.65 16 21 C -0.14 -1.65 7.27 37.15 0.27 -1.38 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.56 6.49 -51.93 -0.34 0.23 16 26 H 0.05 0.63 6.94 -51.93 -0.36 0.27 16 27 H 0.05 0.87 7.75 -51.92 -0.40 0.47 16 28 H 0.08 1.63 6.69 -51.93 -0.35 1.28 16 29 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 30 H 0.07 1.54 7.60 -51.93 -0.39 1.14 16 31 H 0.05 0.85 7.83 -51.93 -0.41 0.44 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.57 6.68 -51.93 -0.35 0.22 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -34.76 297.76 -5.66 -40.43 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.79 Total: -1.32 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 0.87 Total: 4.62 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.09 Total: -38.74 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.29 Total: -25.05 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.76 -5.66 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.740 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds