Wall clock time and date at job start Mon Mar 30 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.30657 * 52.82650 * 4 3 2 6 6 C 1.54393 * 110.34333 * 290.53575 * 4 3 2 7 7 N 1.48141 * 104.61918 * 217.26525 * 6 4 3 8 8 C 1.34773 * 127.83866 * 219.60876 * 7 6 4 9 9 O 1.21688 * 120.00476 * 179.97438 * 8 7 6 10 10 C 1.46382 * 119.99878 * 359.96641 * 8 7 6 11 11 H 1.07996 * 119.99821 * 0.02562 * 10 8 7 12 12 C 1.40051 * 119.99962 * 179.97438 * 10 8 7 13 13 N 1.30672 * 119.99735 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99950 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46828 * 90.00266 * 14 12 10 16 16 H 1.48496 * 109.47139 * 210.00170 * 14 12 10 17 17 H 1.48496 * 109.47180 * 330.00641 * 14 12 10 18 18 C 1.48143 * 104.32442 * 39.58377 * 7 6 4 19 19 C 1.54286 * 110.34311 * 175.00105 * 4 3 2 20 20 C 1.53001 * 110.33964 * 237.74072 * 19 4 3 21 21 C 1.52993 * 110.34027 * 359.97438 * 19 4 3 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 24 24 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 26 26 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 27 27 H 1.09007 * 110.40515 * 336.05230 * 6 4 3 28 28 H 1.09000 * 110.40620 * 98.47567 * 6 4 3 29 29 H 0.97004 * 119.99654 * 179.97438 * 13 12 10 30 30 H 1.08997 * 110.40826 * 201.63307 * 18 7 6 31 31 H 1.09001 * 110.40829 * 79.20167 * 18 7 6 32 32 H 1.08995 * 109.47398 * 60.00058 * 20 19 4 33 33 H 1.09002 * 109.46547 * 179.97438 * 20 19 4 34 34 H 1.08999 * 109.47349 * 299.99675 * 20 19 4 35 35 H 1.09001 * 109.47810 * 60.00047 * 21 19 4 36 36 H 1.09004 * 109.47366 * 180.02562 * 21 19 4 37 37 H 1.09002 * 109.47601 * 300.00041 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8635 0.5391 -0.8154 6 6 4.0310 0.6357 1.3547 7 7 5.2925 1.3672 1.6157 8 6 6.4342 0.8840 2.1442 9 8 7.3927 1.6181 2.2965 10 6 6.5213 -0.5239 2.5351 11 1 5.6708 -1.1755 2.3997 12 6 7.7080 -1.0262 3.0838 13 7 8.7372 -0.2378 3.2471 14 14 7.8194 -2.8231 3.5820 15 1 8.3035 -3.6268 2.4310 16 1 8.7661 -2.9642 4.7174 17 1 6.4771 -3.3067 3.9937 18 6 5.0144 2.7503 1.1635 19 6 4.1840 2.5788 -0.1267 20 6 5.0935 2.6332 -1.3559 21 6 3.1059 3.6609 -0.2136 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.6887 1.8463 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 3.3021 0.8433 2.1382 28 1 4.2202 -0.4355 1.2846 29 1 9.5590 -0.5856 3.6275 30 1 5.9457 3.2745 0.9491 31 1 4.4392 3.2882 1.9171 32 1 4.5060 2.4321 -2.2517 33 1 5.5432 3.6232 -1.4314 34 1 5.8787 1.8833 -1.2603 35 1 2.4913 3.6348 0.6863 36 1 3.5790 4.6389 -0.3026 37 1 2.4791 3.4801 -1.0869 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409435786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:00 Heat of formation + Delta-G solvation = -111.373750 kcal Electronic energy + Delta-G solvation = -18191.617341 eV Core-core repulsion = 15353.847893 eV Total energy + Delta-G solvation = -2837.769448 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98885 -38.80129 -37.86551 -34.73840 -34.25748 -31.76447 -29.06817 -28.46641 -27.57531 -26.47914 -25.70209 -23.01118 -21.26276 -19.60496 -18.44297 -17.78109 -17.36484 -16.78127 -16.41484 -16.13909 -15.60192 -15.41170 -14.98230 -14.46612 -14.27806 -14.20479 -13.47333 -13.33445 -13.24045 -13.00840 -12.79122 -12.75526 -12.50243 -12.40485 -12.32027 -12.06723 -12.03165 -11.49801 -11.42069 -11.31153 -10.96514 -10.44371 -9.90469 -9.17697 -8.33158 -6.88491 1.36528 1.38555 1.54020 2.21297 2.41426 2.79478 2.92190 3.47689 3.61246 3.77356 3.93467 4.21464 4.31529 4.40913 4.43660 4.54375 4.60778 4.66449 4.71487 4.74862 4.82368 4.85997 4.88909 4.94068 5.04959 5.11987 5.16843 5.29971 5.30831 5.38469 5.43034 5.63708 6.00104 6.36197 6.39995 6.83287 7.47715 8.42160 8.63578 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.007288 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.990241 B = 3841.011198 C = 4732.111576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.078 3.922 4 C -0.087 4.087 5 H 0.075 0.925 6 C 0.124 3.876 7 N -0.656 5.656 8 C 0.558 3.442 9 O -0.633 6.633 10 C -0.567 4.567 11 H 0.082 0.918 12 C 0.029 3.971 13 N -0.822 5.822 14 Si 0.997 3.003 15 H -0.260 1.260 16 H -0.268 1.268 17 H -0.250 1.250 18 C 0.112 3.888 19 C -0.063 4.063 20 C -0.130 4.130 21 C -0.135 4.135 22 H 0.091 0.909 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.276 0.724 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.202 2.179 -8.119 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.002 3.998 4 C -0.106 4.106 5 H 0.093 0.907 6 C 0.001 3.999 7 N -0.393 5.393 8 C 0.365 3.635 9 O -0.521 6.521 10 C -0.603 4.603 11 H 0.100 0.900 12 C -0.186 4.186 13 N -0.451 5.451 14 Si 0.816 3.184 15 H -0.184 1.184 16 H -0.193 1.193 17 H -0.173 1.173 18 C -0.012 4.012 19 C -0.064 4.064 20 C -0.187 4.187 21 C -0.192 4.192 22 H 0.109 0.891 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.297 2.412 -7.925 18.282 hybrid contribution 0.497 -0.427 0.471 0.807 sum -15.800 1.984 -7.455 17.583 Atomic orbital electron populations 1.22902 0.79555 1.03569 1.00932 1.87881 1.21423 1.29078 1.95601 1.22747 0.90973 0.84310 1.01769 1.22115 0.94666 0.96567 0.97267 0.90679 1.22132 0.85137 0.96745 0.95916 1.49021 1.13057 1.10508 1.66684 1.18337 0.79468 0.89115 0.76587 1.90542 1.38330 1.61660 1.61521 1.21363 1.00680 0.93791 1.44451 0.89957 1.27003 0.93931 1.04907 0.92785 1.70192 1.03036 1.38620 1.33257 0.85029 0.79609 0.75133 0.78612 1.18438 1.19284 1.17349 1.22280 0.98040 0.85472 0.95402 1.21430 0.95835 0.94955 0.94173 1.21793 0.98577 1.01278 0.97054 1.21934 0.97126 0.96933 1.03199 0.89081 0.92639 0.93346 0.90229 0.92061 0.92316 0.92337 0.91444 0.93921 0.92194 0.90090 0.91886 0.95914 0.91480 0.91626 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.63 10.60 -148.98 -1.58 -12.21 16 3 C 0.08 1.76 4.07 71.98 0.29 2.05 16 4 C -0.09 -2.62 2.98 -9.89 -0.03 -2.64 16 5 H 0.07 2.41 7.71 -2.39 -0.02 2.39 16 6 C 0.12 4.90 6.32 86.54 0.55 5.45 16 7 N -0.66 -32.39 3.32 -813.03 -2.70 -35.08 16 8 C 0.56 34.76 7.84 86.36 0.68 35.44 16 9 O -0.63 -44.96 15.29 -4.31 -0.07 -45.03 16 10 C -0.57 -34.13 9.07 24.83 0.23 -33.90 16 11 H 0.08 4.57 6.50 -2.91 -0.02 4.55 16 12 C 0.03 1.67 5.50 85.31 0.47 2.14 16 13 N -0.82 -52.10 11.83 21.84 0.26 -51.85 16 14 Si 1.00 42.71 29.56 68.60 2.03 44.73 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 18 C 0.11 4.47 6.14 86.53 0.53 5.00 16 19 C -0.06 -1.82 1.03 -51.28 -0.05 -1.87 16 20 C -0.13 -3.73 8.24 71.98 0.59 -3.13 16 21 C -0.13 -2.61 7.27 71.98 0.52 -2.09 16 22 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.08 1.36 6.49 -2.39 -0.02 1.35 16 26 H 0.06 1.27 6.94 -2.39 -0.02 1.25 16 27 H 0.06 2.16 7.75 -2.38 -0.02 2.14 16 28 H 0.06 2.50 6.69 -2.39 -0.02 2.48 16 29 H 0.28 15.73 8.29 -92.71 -0.77 14.96 16 30 H 0.04 1.93 7.60 -2.39 -0.02 1.91 16 31 H 0.06 2.20 7.83 -2.39 -0.02 2.18 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.21 6.90 -2.39 -0.02 1.20 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.08 1.22 6.68 -2.39 -0.02 1.21 16 Total: -1.00 -81.00 297.76 4.01 -76.98 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.04 Total: 14.32 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.03 Total: 8.13 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.44 Total: -86.93 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -1.64 Total: -57.23 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -81.00 4.01 -76.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.393 kcal (2) G-P(sol) polarization free energy of solvation -80.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds