Wall clock time and date at job start Mon Mar 30 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47450 * 2 1 4 4 C 1.53004 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.50122 * 54.99853 * 4 3 2 6 6 C 1.53195 * 109.49634 * 294.93252 * 4 3 2 7 7 N 1.46922 * 108.77635 * 185.41624 * 6 4 3 8 8 C 1.34772 * 120.63025 * 233.63355 * 7 6 4 9 9 O 1.21685 * 120.00095 * 354.74462 * 8 7 6 10 10 C 1.46374 * 120.00276 * 174.74892 * 8 7 6 11 11 H 1.08005 * 119.99575 * 5.59510 * 10 8 7 12 12 C 1.40042 * 120.00372 * 185.59766 * 10 8 7 13 13 N 1.30670 * 119.99969 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00142 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47299 * 89.99691 * 14 12 10 16 16 H 1.48504 * 109.47457 * 209.99743 * 14 12 10 17 17 H 1.48500 * 109.47258 * 329.99904 * 14 12 10 18 18 C 1.46927 * 118.73806 * 53.60922 * 7 6 4 19 19 C 1.53193 * 108.77579 * 306.39173 * 18 7 6 20 20 C 1.53041 * 109.49382 * 175.06640 * 4 3 2 21 21 H 1.08998 * 109.46293 * 61.29483 * 20 4 3 22 22 O 1.42901 * 109.46060 * 301.32819 * 20 4 3 23 23 H 1.08996 * 109.47015 * 300.00113 * 1 2 3 24 24 H 1.09007 * 109.47019 * 60.00101 * 1 2 3 25 25 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47194 * 120.00458 * 2 1 3 27 27 H 1.09008 * 109.47354 * 239.99600 * 2 1 3 28 28 H 1.09007 * 109.46927 * 299.99955 * 3 2 1 29 29 H 1.08996 * 109.47104 * 59.99942 * 3 2 1 30 30 H 1.08997 * 109.58407 * 305.20328 * 6 4 3 31 31 H 1.09003 * 109.58559 * 65.62841 * 6 4 3 32 32 H 0.97005 * 119.99996 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.58959 * 66.18171 * 18 7 6 34 34 H 1.08999 * 109.58646 * 186.45946 * 18 7 6 35 35 H 1.08994 * 109.49687 * 174.58777 * 19 18 7 36 36 H 1.09001 * 109.49745 * 294.65095 * 19 18 7 37 37 H 0.96698 * 113.99921 * 180.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9335 0.8531 -0.8425 6 6 4.0819 0.8334 1.3086 7 7 5.5451 0.9592 1.3485 8 6 6.3217 -0.1212 1.5627 9 8 5.8117 -1.1956 1.8202 10 6 7.7786 -0.0024 1.4858 11 1 8.2347 0.9668 1.3472 12 6 8.5810 -1.1452 1.5918 13 7 8.0292 -2.3177 1.7599 14 14 10.4402 -0.9935 1.4929 15 1 10.9928 -0.7824 2.8550 16 1 11.0084 -2.2382 0.9156 17 1 10.7975 0.1606 0.6294 18 6 6.1458 2.2853 1.1498 19 6 5.6108 2.8781 -0.1576 20 6 4.0808 2.8797 -0.1247 21 1 3.7371 3.4623 0.7300 22 8 3.5788 3.4609 -1.3298 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.6461 1.3657 2.1540 31 1 3.8043 -0.2197 1.3548 32 1 8.5850 -3.1092 1.8337 33 1 5.8784 2.9361 1.9824 34 1 7.2302 2.1906 1.0938 35 1 5.9734 3.8999 -0.2689 36 1 5.9561 2.2760 -0.9981 37 1 3.8633 4.3738 -1.4744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:56 Heat of formation + Delta-G solvation = -107.966353 kcal Electronic energy + Delta-G solvation = -18151.264556 eV Core-core repulsion = 15313.642863 eV Total energy + Delta-G solvation = -2837.621693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19996 -36.88824 -35.28110 -34.29607 -32.54039 -30.92244 -30.20681 -26.93352 -25.42233 -23.84694 -22.46830 -20.63459 -20.12803 -18.96810 -17.13162 -16.52744 -15.67771 -15.11267 -14.58827 -14.24155 -14.12749 -13.87495 -13.65248 -13.00604 -12.78519 -12.59968 -12.41832 -11.86750 -11.68263 -11.40667 -11.18009 -11.08723 -11.04530 -10.84528 -10.75937 -10.52579 -10.27043 -10.24112 -10.12672 -9.73326 -9.44628 -8.87104 -7.59166 -7.25210 -6.21194 -4.66181 3.12511 3.19433 3.22279 4.06783 4.38210 4.51732 4.59649 4.90332 5.12146 5.20952 5.35280 5.43626 5.48924 5.55908 5.71560 5.81335 5.85067 5.92710 5.99454 6.06842 6.13554 6.20227 6.26625 6.32545 6.44662 6.45794 6.55745 6.61227 6.68494 6.83022 7.44090 7.60384 7.80795 8.11975 8.33418 9.00665 9.41603 10.56102 10.74588 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.006795 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.870400 B = 4119.849658 C = 4881.294725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.105 4.105 4 C -0.093 4.093 5 H 0.076 0.924 6 C 0.127 3.873 7 N -0.644 5.644 8 C 0.559 3.441 9 O -0.577 6.577 10 C -0.545 4.545 11 H 0.073 0.927 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.906 3.094 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.265 1.265 18 C 0.123 3.877 19 C -0.166 4.166 20 C 0.113 3.887 21 H 0.049 0.951 22 O -0.569 6.569 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.268 0.732 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 10.381 -3.551 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.143 4.143 4 C -0.112 4.112 5 H 0.095 0.905 6 C 0.003 3.997 7 N -0.382 5.382 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.582 4.582 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.397 5.397 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.001 4.001 19 C -0.205 4.205 20 C 0.054 3.946 21 H 0.067 0.933 22 O -0.374 6.374 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.723 8.954 -3.423 12.310 hybrid contribution 1.262 0.796 -0.043 1.493 sum -6.461 9.749 -3.466 12.198 Atomic orbital electron populations 1.21757 0.96369 1.01206 1.01295 1.21602 0.95228 0.97221 1.02664 1.21506 0.94400 0.96551 1.01814 1.21593 0.95241 0.94191 1.00210 0.90523 1.21223 0.83017 1.01860 0.93579 1.48225 1.04144 1.08043 1.77761 1.18248 0.87452 0.81341 0.76412 1.90589 1.75175 1.27014 1.53156 1.20973 0.89595 0.94301 1.53303 0.90934 1.25723 1.00096 0.94778 0.92598 1.70012 1.36284 0.98634 1.34722 0.86397 0.83070 0.78458 0.78999 1.19701 1.20438 1.18897 1.21368 1.00076 0.84901 0.93788 1.22680 0.96055 1.00874 1.00872 1.21815 0.92536 0.94337 0.85888 0.93275 1.86518 1.75762 1.31615 1.43483 0.93025 0.93129 0.93040 0.91418 0.92072 0.91419 0.92552 0.94094 0.89106 0.92071 0.94071 0.88557 0.91861 0.90843 0.78376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.15 0.37 -1.37 16 2 C -0.13 -1.84 5.69 -26.74 -0.15 -1.99 16 3 C -0.10 -1.50 4.60 -26.73 -0.12 -1.63 16 4 C -0.09 -1.57 2.09 -90.50 -0.19 -1.75 16 5 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 6 C 0.13 2.54 5.31 -3.71 -0.02 2.52 16 7 N -0.64 -14.71 2.97 -174.43 -0.52 -15.22 16 8 C 0.56 15.96 7.61 -12.99 -0.10 15.87 16 9 O -0.58 -18.69 14.48 5.20 0.08 -18.61 16 10 C -0.55 -15.21 8.88 -35.63 -0.32 -15.53 16 11 H 0.07 1.83 5.64 -52.48 -0.30 1.54 16 12 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 13 N -0.77 -22.98 11.84 55.55 0.66 -22.32 16 14 Si 0.91 19.96 29.56 -169.99 -5.02 14.93 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 18 C 0.12 2.28 6.35 -3.71 -0.02 2.25 16 19 C -0.17 -2.56 5.70 -26.61 -0.15 -2.71 16 20 C 0.11 1.67 2.88 -26.69 -0.08 1.59 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 O -0.57 -7.71 12.51 -35.23 -0.44 -8.15 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.04 6.70 -51.93 -0.35 0.69 16 27 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.07 0.97 7.50 -51.93 -0.39 0.58 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 2.03 5.76 -51.93 -0.30 1.73 16 32 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.87 5.30 -51.93 -0.28 1.59 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.37 3.34 9.08 45.56 0.41 3.75 16 LS Contribution 295.03 15.07 4.45 4.45 Total: -1.00 -33.80 295.03 -6.66 -40.47 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.98 Total: 4.88 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.88 Total: -0.42 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.14 Total: -37.54 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.37 Total: -26.76 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.80 -6.66 -40.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.501 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds