Wall clock time and date at job start Mon Mar 30 2020 04:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47450 * 2 1 4 4 C 1.53004 * 109.47121 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.50122 * 54.99853 * 4 3 2 6 6 C 1.53195 * 109.49634 * 294.93252 * 4 3 2 7 7 N 1.46922 * 108.77635 * 185.41624 * 6 4 3 8 8 C 1.34772 * 120.63025 * 233.63355 * 7 6 4 9 9 O 1.21685 * 120.00095 * 354.74462 * 8 7 6 10 10 C 1.46374 * 120.00276 * 174.74892 * 8 7 6 11 11 H 1.08005 * 119.99575 * 5.59510 * 10 8 7 12 12 C 1.40042 * 120.00372 * 185.59766 * 10 8 7 13 13 N 1.30670 * 119.99969 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00142 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47299 * 89.99691 * 14 12 10 16 16 H 1.48504 * 109.47457 * 209.99743 * 14 12 10 17 17 H 1.48500 * 109.47258 * 329.99904 * 14 12 10 18 18 C 1.46927 * 118.73806 * 53.60922 * 7 6 4 19 19 C 1.53193 * 108.77579 * 306.39173 * 18 7 6 20 20 C 1.53041 * 109.49382 * 175.06640 * 4 3 2 21 21 H 1.08998 * 109.46293 * 61.29483 * 20 4 3 22 22 O 1.42901 * 109.46060 * 301.32819 * 20 4 3 23 23 H 1.08996 * 109.47015 * 300.00113 * 1 2 3 24 24 H 1.09007 * 109.47019 * 60.00101 * 1 2 3 25 25 H 1.09001 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47194 * 120.00458 * 2 1 3 27 27 H 1.09008 * 109.47354 * 239.99600 * 2 1 3 28 28 H 1.09007 * 109.46927 * 299.99955 * 3 2 1 29 29 H 1.08996 * 109.47104 * 59.99942 * 3 2 1 30 30 H 1.08997 * 109.58407 * 305.20328 * 6 4 3 31 31 H 1.09003 * 109.58559 * 65.62841 * 6 4 3 32 32 H 0.97005 * 119.99996 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.58959 * 66.18171 * 18 7 6 34 34 H 1.08999 * 109.58646 * 186.45946 * 18 7 6 35 35 H 1.08994 * 109.49687 * 174.58777 * 19 18 7 36 36 H 1.09001 * 109.49745 * 294.65095 * 19 18 7 37 37 H 0.96698 * 113.99921 * 180.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9335 0.8531 -0.8425 6 6 4.0819 0.8334 1.3086 7 7 5.5451 0.9592 1.3485 8 6 6.3217 -0.1212 1.5627 9 8 5.8117 -1.1956 1.8202 10 6 7.7786 -0.0024 1.4858 11 1 8.2347 0.9668 1.3472 12 6 8.5810 -1.1452 1.5918 13 7 8.0292 -2.3177 1.7599 14 14 10.4402 -0.9935 1.4929 15 1 10.9928 -0.7824 2.8550 16 1 11.0084 -2.2382 0.9156 17 1 10.7975 0.1606 0.6294 18 6 6.1458 2.2853 1.1498 19 6 5.6108 2.8781 -0.1576 20 6 4.0808 2.8797 -0.1247 21 1 3.7371 3.4623 0.7300 22 8 3.5788 3.4609 -1.3298 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.6461 1.3657 2.1540 31 1 3.8043 -0.2197 1.3548 32 1 8.5850 -3.1092 1.8337 33 1 5.8784 2.9361 1.9824 34 1 7.2302 2.1906 1.0938 35 1 5.9734 3.8999 -0.2689 36 1 5.9561 2.2760 -0.9981 37 1 3.8633 4.3738 -1.4744 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409435832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:56 Heat of formation + Delta-G solvation = -133.174348 kcal Electronic energy + Delta-G solvation = -18152.357657 eV Core-core repulsion = 15313.642863 eV Total energy + Delta-G solvation = -2838.714793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71785 -38.65026 -36.52207 -35.88106 -34.66733 -32.28358 -31.70195 -28.81864 -26.84363 -25.46789 -23.80360 -21.99571 -21.63455 -20.61399 -18.51201 -18.24566 -17.64874 -16.58002 -16.17027 -15.74972 -15.49643 -15.38201 -15.08291 -14.43260 -14.18138 -14.15717 -13.74394 -13.40253 -13.30928 -13.04448 -12.76171 -12.63480 -12.49359 -12.22284 -12.17047 -12.04064 -11.96556 -11.76778 -11.41105 -11.00521 -10.94080 -10.70582 -9.78056 -9.11890 -8.29966 -6.84873 1.39082 1.40774 1.55762 2.22899 2.44892 2.81995 3.29741 3.61203 3.66343 3.87370 3.99581 4.19137 4.24470 4.27710 4.34202 4.37623 4.62135 4.73985 4.80501 4.81812 4.87453 4.91342 4.95350 5.05085 5.10158 5.18143 5.26984 5.38058 5.38800 5.44696 5.50189 5.76621 6.13798 6.38945 6.87042 6.98349 7.41136 8.45812 8.66602 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.006795 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.870400 B = 4119.849658 C = 4881.294725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C -0.094 4.094 4 C -0.088 4.088 5 H 0.041 0.959 6 C 0.128 3.872 7 N -0.648 5.648 8 C 0.539 3.461 9 O -0.633 6.633 10 C -0.570 4.570 11 H 0.096 0.904 12 C 0.027 3.973 13 N -0.825 5.825 14 Si 0.996 3.004 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.246 1.246 18 C 0.116 3.884 19 C -0.157 4.157 20 C 0.122 3.878 21 H 0.073 0.927 22 O -0.576 6.576 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.274 0.726 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.046 0.954 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.825 13.490 -3.969 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.108 4.108 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.384 5.384 8 C 0.345 3.655 9 O -0.521 6.521 10 C -0.606 4.606 11 H 0.114 0.886 12 C -0.187 4.187 13 N -0.454 5.454 14 Si 0.815 3.185 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.169 1.169 18 C -0.007 4.007 19 C -0.195 4.195 20 C 0.063 3.937 21 H 0.091 0.909 22 O -0.384 6.384 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.065 0.935 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.373 12.154 -3.864 14.731 hybrid contribution 1.071 -0.126 0.076 1.081 sum -6.302 12.028 -3.788 14.098 Atomic orbital electron populations 1.21710 0.93945 1.01916 1.02448 1.21602 0.97375 0.97121 1.00903 1.21440 0.92253 0.96532 1.02957 1.21462 0.97044 0.95491 0.96778 0.93994 1.21283 0.81603 1.00387 0.96253 1.48121 1.05167 1.08623 1.76520 1.18703 0.88648 0.81903 0.76239 1.90534 1.76284 1.29591 1.55659 1.21521 0.89896 0.95754 1.53397 0.88643 1.27021 1.06579 0.93901 0.91228 1.70200 1.39074 0.99973 1.36198 0.85042 0.74677 0.79053 0.79689 1.18521 1.19999 1.16911 1.21618 0.99401 0.83033 0.96626 1.22610 0.96667 1.02500 0.97762 1.21601 0.91763 0.92921 0.87370 0.90878 1.86471 1.75647 1.33625 1.42665 0.91864 0.91881 0.92675 0.93555 0.93655 0.90544 0.90777 0.91989 0.92836 0.91660 0.91306 0.89775 0.87460 0.93479 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.91 71.98 0.71 -2.45 16 2 C -0.13 -3.81 5.69 30.59 0.17 -3.64 16 3 C -0.09 -2.58 4.60 30.59 0.14 -2.44 16 4 C -0.09 -2.95 2.09 -10.71 -0.02 -2.97 16 5 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 6 C 0.13 5.23 5.31 86.36 0.46 5.68 16 7 N -0.65 -30.17 2.97 -824.00 -2.45 -32.62 16 8 C 0.54 32.09 7.61 86.36 0.66 32.75 16 9 O -0.63 -43.67 14.48 -4.30 -0.06 -43.73 16 10 C -0.57 -32.41 8.88 24.83 0.22 -32.19 16 11 H 0.10 4.80 5.64 -2.91 -0.02 4.78 16 12 C 0.03 1.54 5.50 85.30 0.47 2.01 16 13 N -0.82 -51.38 11.84 21.83 0.26 -51.12 16 14 Si 1.00 41.02 29.56 68.60 2.03 43.05 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 16 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 18 C 0.12 4.11 6.35 86.36 0.55 4.66 16 19 C -0.16 -4.42 5.70 30.67 0.17 -4.24 16 20 C 0.12 3.26 2.88 30.62 0.09 3.34 16 21 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 22 O -0.58 -13.53 12.51 -148.98 -1.86 -15.39 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.51 6.70 -2.39 -0.02 1.50 16 27 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.08 2.01 7.50 -2.38 -0.02 1.99 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.57 5.76 -2.39 -0.01 2.56 16 32 H 0.27 15.44 8.29 -92.70 -0.77 14.67 16 33 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 3.16 5.30 -2.39 -0.01 3.15 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.39 5.25 9.08 -74.06 -0.67 4.58 16 Total: -1.00 -78.36 295.03 1.92 -76.44 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.39 Total: 22.85 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 3.62 Total: 0.52 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.19 Total: -83.74 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -1.93 Total: -59.12 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -78.36 1.92 -76.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.735 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds