Wall clock time and date at job start Mon Mar 30 2020 04:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46999 * 2 1 4 4 C 1.52996 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.09012 * 109.49849 * 305.06341 * 4 3 2 6 6 C 1.53621 * 109.43469 * 65.28588 * 4 3 2 7 7 N 1.46925 * 108.54533 * 174.72345 * 6 4 3 8 8 C 1.34777 * 120.63105 * 126.36950 * 7 6 4 9 9 O 1.21687 * 119.99770 * 4.99002 * 8 7 6 10 10 C 1.46375 * 120.00033 * 184.98579 * 8 7 6 11 11 H 1.07991 * 119.99970 * 354.30204 * 10 8 7 12 12 C 1.40054 * 119.99829 * 174.30207 * 10 8 7 13 13 N 1.30668 * 119.99796 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99969 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47101 * 270.00462 * 14 12 10 16 16 H 1.48498 * 109.47031 * 30.00172 * 14 12 10 17 17 H 1.48498 * 109.47015 * 150.00021 * 14 12 10 18 18 C 1.46931 * 118.73929 * 306.09737 * 7 6 4 19 19 C 1.53186 * 108.77355 * 53.86017 * 18 7 6 20 20 C 1.53035 * 109.49775 * 185.00168 * 4 3 2 21 21 H 1.09004 * 109.44868 * 298.69490 * 20 4 3 22 22 O 1.42898 * 109.46429 * 58.66209 * 20 4 3 23 23 H 1.09005 * 109.46917 * 60.00004 * 1 2 3 24 24 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47193 * 300.00195 * 1 2 3 26 26 H 1.08994 * 109.47114 * 239.99839 * 2 1 3 27 27 H 1.09006 * 109.47357 * 119.99697 * 2 1 3 28 28 H 1.09002 * 109.47098 * 60.00240 * 3 2 1 29 29 H 1.08993 * 109.46665 * 299.99892 * 3 2 1 30 30 H 1.09003 * 109.73981 * 54.98939 * 6 4 3 31 31 H 1.08996 * 109.66536 * 294.42151 * 6 4 3 32 32 H 0.97000 * 119.99690 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.58376 * 173.64549 * 18 7 6 34 34 H 1.09004 * 109.58485 * 293.93035 * 18 7 6 35 35 H 1.09000 * 109.50426 * 65.31479 * 19 18 7 36 36 H 1.08997 * 109.49561 * 185.38339 * 19 18 7 37 37 H 0.96699 * 114.00436 * 180.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9334 0.8524 0.8420 6 6 4.0816 0.8367 -1.3150 7 7 5.5451 0.9618 -1.3491 8 6 6.3218 -0.1182 -1.5660 9 8 5.8118 -1.1920 -1.8260 10 6 7.7787 0.0007 -1.4889 11 1 8.2348 0.9696 -1.3498 12 6 8.5811 -1.1422 -1.5957 13 7 8.0291 -2.3145 -1.7645 14 14 10.4403 -0.9907 -1.4966 15 1 10.9929 -0.7787 -2.8586 16 1 10.7975 0.1629 -0.6325 17 1 11.0084 -2.2357 -0.9201 18 6 6.1458 2.2876 -1.1481 19 6 5.6108 2.8780 0.1602 20 6 4.0806 2.8797 0.1264 21 1 3.7369 3.4631 -0.7278 22 8 3.5785 3.4597 1.3320 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6494 1.3729 -2.1599 31 1 3.8035 -0.2159 -1.3668 32 1 8.5849 -3.1060 -1.8388 33 1 7.2300 2.1924 -1.0897 34 1 5.8804 2.9389 -1.9809 35 1 5.9554 2.2743 0.9997 36 1 5.9737 3.8995 0.2735 37 1 3.8624 4.3726 1.4773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:58 Heat of formation + Delta-G solvation = -107.978449 kcal Electronic energy + Delta-G solvation = -18150.009753 eV Core-core repulsion = 15312.387536 eV Total energy + Delta-G solvation = -2837.622217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.18607 -36.88738 -35.27208 -34.29447 -32.54035 -30.90932 -30.20428 -26.93361 -25.41944 -23.84006 -22.46549 -20.63383 -20.12281 -18.97120 -17.13176 -16.52613 -15.67657 -15.11026 -14.58415 -14.23998 -14.12637 -13.87426 -13.65239 -13.00301 -12.78384 -12.59813 -12.41719 -11.86465 -11.68105 -11.40550 -11.17887 -11.08459 -11.04483 -10.84611 -10.75662 -10.52887 -10.27067 -10.24155 -10.12324 -9.73507 -9.44444 -8.87107 -7.59118 -7.25147 -6.21216 -4.66146 3.12524 3.19423 3.22287 4.06834 4.38207 4.52053 4.59556 4.90362 5.12392 5.21060 5.35355 5.43772 5.48912 5.55872 5.71550 5.80927 5.85232 5.92446 5.99535 6.06868 6.13489 6.20407 6.26635 6.32702 6.44742 6.45742 6.55829 6.61406 6.68383 6.82993 7.44135 7.60407 7.80908 8.12018 8.33480 9.00655 9.41607 10.56118 10.74602 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028302 B = 0.006794 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.104337 B = 4120.311620 C = 4881.356369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.105 4.105 4 C -0.093 4.093 5 H 0.077 0.923 6 C 0.128 3.872 7 N -0.644 5.644 8 C 0.559 3.441 9 O -0.577 6.577 10 C -0.545 4.545 11 H 0.073 0.927 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.906 3.094 15 H -0.272 1.272 16 H -0.265 1.265 17 H -0.279 1.279 18 C 0.123 3.877 19 C -0.166 4.166 20 C 0.113 3.887 21 H 0.049 0.951 22 O -0.569 6.569 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.268 0.732 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 10.376 3.558 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.143 4.143 4 C -0.112 4.112 5 H 0.095 0.905 6 C 0.003 3.997 7 N -0.382 5.382 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.582 4.582 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.396 5.396 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.189 1.189 17 H -0.204 1.204 18 C -0.001 4.001 19 C -0.205 4.205 20 C 0.054 3.946 21 H 0.067 0.933 22 O -0.374 6.374 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.722 8.948 3.431 12.308 hybrid contribution 1.262 0.796 0.040 1.493 sum -6.460 9.744 3.471 12.195 Atomic orbital electron populations 1.21760 0.96374 1.01202 1.01294 1.21602 0.95221 0.97223 1.02659 1.21507 0.94432 0.96547 1.01806 1.21670 0.95213 0.94190 1.00149 0.90502 1.21310 0.82993 1.01862 0.93507 1.48232 1.04145 1.08094 1.77721 1.18251 0.87453 0.81340 0.76412 1.90589 1.75174 1.27053 1.53127 1.20973 0.89594 0.94308 1.53301 0.90932 1.25727 1.00096 0.94779 0.92596 1.70011 1.36285 0.98641 1.34712 0.86395 0.83070 0.78457 0.78999 1.19701 1.18897 1.20438 1.21368 1.00079 0.84918 0.93778 1.22680 0.96053 1.00876 1.00852 1.21820 0.92535 0.94361 0.85869 0.93278 1.86517 1.75803 1.31627 1.43442 0.93033 0.93042 0.93124 0.91421 0.92074 0.91428 0.92557 0.94060 0.89101 0.92071 0.88577 0.94054 0.90838 0.91862 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.13 -1.84 5.70 -26.73 -0.15 -1.99 16 3 C -0.10 -1.51 4.60 -26.73 -0.12 -1.63 16 4 C -0.09 -1.56 2.10 -90.28 -0.19 -1.75 16 5 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 6 C 0.13 2.54 5.34 -3.49 -0.02 2.52 16 7 N -0.64 -14.71 2.97 -174.16 -0.52 -15.22 16 8 C 0.56 15.96 7.61 -12.99 -0.10 15.86 16 9 O -0.58 -18.69 14.48 5.20 0.08 -18.61 16 10 C -0.55 -15.21 8.88 -35.63 -0.32 -15.53 16 11 H 0.07 1.84 5.64 -52.49 -0.30 1.54 16 12 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 13 N -0.77 -22.98 11.84 55.55 0.66 -22.32 16 14 Si 0.91 19.96 29.56 -169.99 -5.02 14.93 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.12 2.27 6.35 -3.71 -0.02 2.25 16 19 C -0.17 -2.55 5.70 -26.61 -0.15 -2.71 16 20 C 0.11 1.67 2.88 -26.69 -0.08 1.59 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 O -0.57 -7.71 12.50 -35.23 -0.44 -8.15 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.07 1.04 6.70 -51.93 -0.35 0.69 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.97 7.50 -51.93 -0.39 0.58 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 2.03 5.76 -51.93 -0.30 1.73 16 32 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 33 H 0.10 1.86 5.30 -51.93 -0.28 1.59 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.37 3.34 9.08 45.56 0.41 3.75 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -33.80 295.08 -6.66 -40.46 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.98 Total: 4.89 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.88 Total: -0.42 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.14 Total: -37.54 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.37 Total: -26.77 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.80 -6.66 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.517 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds