Wall clock time and date at job start Mon Mar 30 2020 04:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46999 * 2 1 4 4 C 1.52996 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.09012 * 109.49849 * 305.06341 * 4 3 2 6 6 C 1.53621 * 109.43469 * 65.28588 * 4 3 2 7 7 N 1.46925 * 108.54533 * 174.72345 * 6 4 3 8 8 C 1.34777 * 120.63105 * 126.36950 * 7 6 4 9 9 O 1.21687 * 119.99770 * 4.99002 * 8 7 6 10 10 C 1.46375 * 120.00033 * 184.98579 * 8 7 6 11 11 H 1.07991 * 119.99970 * 354.30204 * 10 8 7 12 12 C 1.40054 * 119.99829 * 174.30207 * 10 8 7 13 13 N 1.30668 * 119.99796 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99969 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47101 * 270.00462 * 14 12 10 16 16 H 1.48498 * 109.47031 * 30.00172 * 14 12 10 17 17 H 1.48498 * 109.47015 * 150.00021 * 14 12 10 18 18 C 1.46931 * 118.73929 * 306.09737 * 7 6 4 19 19 C 1.53186 * 108.77355 * 53.86017 * 18 7 6 20 20 C 1.53035 * 109.49775 * 185.00168 * 4 3 2 21 21 H 1.09004 * 109.44868 * 298.69490 * 20 4 3 22 22 O 1.42898 * 109.46429 * 58.66209 * 20 4 3 23 23 H 1.09005 * 109.46917 * 60.00004 * 1 2 3 24 24 H 1.09006 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47193 * 300.00195 * 1 2 3 26 26 H 1.08994 * 109.47114 * 239.99839 * 2 1 3 27 27 H 1.09006 * 109.47357 * 119.99697 * 2 1 3 28 28 H 1.09002 * 109.47098 * 60.00240 * 3 2 1 29 29 H 1.08993 * 109.46665 * 299.99892 * 3 2 1 30 30 H 1.09003 * 109.73981 * 54.98939 * 6 4 3 31 31 H 1.08996 * 109.66536 * 294.42151 * 6 4 3 32 32 H 0.97000 * 119.99690 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.58376 * 173.64549 * 18 7 6 34 34 H 1.09004 * 109.58485 * 293.93035 * 18 7 6 35 35 H 1.09000 * 109.50426 * 65.31479 * 19 18 7 36 36 H 1.08997 * 109.49561 * 185.38339 * 19 18 7 37 37 H 0.96699 * 114.00436 * 180.02562 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9334 0.8524 0.8420 6 6 4.0816 0.8367 -1.3150 7 7 5.5451 0.9618 -1.3491 8 6 6.3218 -0.1182 -1.5660 9 8 5.8118 -1.1920 -1.8260 10 6 7.7787 0.0007 -1.4889 11 1 8.2348 0.9696 -1.3498 12 6 8.5811 -1.1422 -1.5957 13 7 8.0291 -2.3145 -1.7645 14 14 10.4403 -0.9907 -1.4966 15 1 10.9929 -0.7787 -2.8586 16 1 10.7975 0.1629 -0.6325 17 1 11.0084 -2.2357 -0.9201 18 6 6.1458 2.2876 -1.1481 19 6 5.6108 2.8780 0.1602 20 6 4.0806 2.8797 0.1264 21 1 3.7369 3.4631 -0.7278 22 8 3.5785 3.4597 1.3320 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.6494 1.3729 -2.1599 31 1 3.8035 -0.2159 -1.3668 32 1 8.5849 -3.1060 -1.8388 33 1 7.2300 2.1924 -1.0897 34 1 5.8804 2.9389 -1.9809 35 1 5.9554 2.2743 0.9997 36 1 5.9737 3.8995 0.2735 37 1 3.8624 4.3726 1.4773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409435833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:58 Heat of formation + Delta-G solvation = -133.176582 kcal Electronic energy + Delta-G solvation = -18151.102426 eV Core-core repulsion = 15312.387536 eV Total energy + Delta-G solvation = -2838.714890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70462 -38.64751 -36.51363 -35.87925 -34.66726 -32.27133 -31.69812 -28.81918 -26.84044 -25.46250 -23.80093 -21.99126 -21.63025 -20.61860 -18.51069 -18.24552 -17.64764 -16.57656 -16.16770 -15.75018 -15.49156 -15.38058 -15.08373 -14.43156 -14.17811 -14.15485 -13.74195 -13.40362 -13.30674 -13.04394 -12.76190 -12.63185 -12.49185 -12.22342 -12.16839 -12.04060 -11.96483 -11.76959 -11.40900 -11.00613 -10.94090 -10.70404 -9.77990 -9.11752 -8.29981 -6.84830 1.39065 1.40780 1.55762 2.22932 2.44922 2.82207 3.29718 3.61271 3.66254 3.87517 3.99722 4.19203 4.24562 4.27670 4.34097 4.37489 4.62050 4.74081 4.80605 4.81672 4.87402 4.91492 4.95455 5.05159 5.10233 5.18169 5.27039 5.38112 5.38846 5.44787 5.50197 5.76696 6.13862 6.39015 6.87034 6.98444 7.41164 8.45855 8.66615 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028302 B = 0.006794 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.104337 B = 4120.311620 C = 4881.356369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C -0.094 4.094 4 C -0.088 4.088 5 H 0.042 0.958 6 C 0.128 3.872 7 N -0.648 5.648 8 C 0.539 3.461 9 O -0.633 6.633 10 C -0.570 4.570 11 H 0.096 0.904 12 C 0.027 3.973 13 N -0.825 5.825 14 Si 0.996 3.004 15 H -0.261 1.261 16 H -0.246 1.246 17 H -0.275 1.275 18 C 0.116 3.884 19 C -0.157 4.157 20 C 0.122 3.878 21 H 0.073 0.927 22 O -0.576 6.576 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.274 0.726 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 13.484 3.980 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.108 4.108 5 H 0.060 0.940 6 C 0.005 3.995 7 N -0.384 5.384 8 C 0.345 3.655 9 O -0.521 6.521 10 C -0.606 4.606 11 H 0.114 0.886 12 C -0.187 4.187 13 N -0.454 5.454 14 Si 0.815 3.185 15 H -0.185 1.185 16 H -0.169 1.169 17 H -0.200 1.200 18 C -0.007 4.007 19 C -0.195 4.195 20 C 0.063 3.937 21 H 0.091 0.909 22 O -0.384 6.384 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.125 0.875 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.373 12.148 3.876 14.730 hybrid contribution 1.071 -0.125 -0.080 1.081 sum -6.302 12.023 3.796 14.095 Atomic orbital electron populations 1.21713 0.93951 1.01913 1.02445 1.21603 0.97368 0.97122 1.00900 1.21440 0.92288 0.96529 1.02946 1.21536 0.97014 0.95486 0.96715 0.93974 1.21373 0.81575 1.00392 0.96192 1.48128 1.05170 1.08673 1.76477 1.18705 0.88648 0.81904 0.76239 1.90535 1.76282 1.29631 1.55630 1.21522 0.89897 0.95760 1.53397 0.88645 1.27024 1.06578 0.93902 0.91227 1.70198 1.39076 0.99979 1.36189 0.85041 0.74678 0.79051 0.79689 1.18522 1.16912 1.19999 1.21617 0.99399 0.83052 0.96610 1.22609 0.96665 1.02498 0.97744 1.21606 0.91762 0.92947 0.87351 0.90880 1.86470 1.75688 1.33639 1.42625 0.91873 0.92676 0.91876 0.93557 0.93657 0.90555 0.90782 0.91940 0.92830 0.91660 0.89801 0.91289 0.93478 0.87463 0.75619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.91 71.98 0.71 -2.45 16 2 C -0.13 -3.81 5.70 30.60 0.17 -3.64 16 3 C -0.09 -2.58 4.60 30.60 0.14 -2.44 16 4 C -0.09 -2.94 2.10 -10.57 -0.02 -2.96 16 5 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 6 C 0.13 5.22 5.34 86.51 0.46 5.68 16 7 N -0.65 -30.17 2.97 -823.15 -2.44 -32.61 16 8 C 0.54 32.08 7.61 86.36 0.66 32.74 16 9 O -0.63 -43.67 14.48 -4.31 -0.06 -43.73 16 10 C -0.57 -32.41 8.88 24.83 0.22 -32.19 16 11 H 0.10 4.80 5.64 -2.92 -0.02 4.78 16 12 C 0.03 1.54 5.50 85.31 0.47 2.01 16 13 N -0.82 -51.38 11.84 21.84 0.26 -51.12 16 14 Si 1.00 41.02 29.56 68.60 2.03 43.05 16 15 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 16 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 17 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 18 C 0.12 4.11 6.35 86.36 0.55 4.65 16 19 C -0.16 -4.41 5.70 30.67 0.17 -4.24 16 20 C 0.12 3.25 2.88 30.62 0.09 3.34 16 21 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 22 O -0.58 -13.53 12.50 -148.98 -1.86 -15.39 16 23 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.05 1.51 6.70 -2.39 -0.02 1.50 16 27 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.08 2.00 7.50 -2.39 -0.02 1.99 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 2.57 5.76 -2.39 -0.01 2.56 16 32 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 33 H 0.08 3.15 5.30 -2.39 -0.01 3.14 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.39 5.25 9.08 -74.06 -0.67 4.58 16 Total: -1.00 -78.36 295.08 1.94 -76.43 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.39 Total: 22.86 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 3.63 Total: 0.51 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.18 Total: -83.73 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -1.93 Total: -59.12 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -78.36 1.94 -76.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.751 kcal (2) G-P(sol) polarization free energy of solvation -78.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds