Wall clock time and date at job start Mon Mar 30 2020 04:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47552 * 2 1 4 4 C 1.52998 * 109.47526 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.49495 * 305.06850 * 4 3 2 6 6 C 1.53624 * 109.43132 * 65.28776 * 4 3 2 7 7 N 1.46917 * 108.54537 * 174.72620 * 6 4 3 8 8 C 1.34778 * 120.63098 * 126.36859 * 7 6 4 9 9 O 1.21682 * 120.00102 * 5.01736 * 8 7 6 10 10 C 1.46380 * 120.00058 * 185.01994 * 8 7 6 11 11 H 1.08000 * 119.99750 * 353.80837 * 10 8 7 12 12 C 1.40043 * 120.00090 * 174.08231 * 10 8 7 13 13 N 1.30672 * 119.99763 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 120.00093 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47424 * 59.99964 * 14 12 10 16 16 H 1.48497 * 109.47395 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47051 * 299.99989 * 14 12 10 18 18 C 1.46929 * 118.73858 * 306.10180 * 7 6 4 19 19 C 1.53185 * 108.77846 * 53.85569 * 18 7 6 20 20 C 1.53036 * 109.50099 * 185.00221 * 4 3 2 21 21 H 1.09002 * 109.45662 * 58.65980 * 20 4 3 22 22 O 1.42900 * 109.45862 * 298.70427 * 20 4 3 23 23 H 1.08992 * 109.47282 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.46832 * 300.00027 * 1 2 3 25 25 H 1.09000 * 109.46746 * 59.99448 * 1 2 3 26 26 H 1.09005 * 109.46640 * 239.99863 * 2 1 3 27 27 H 1.09000 * 109.46746 * 120.00552 * 2 1 3 28 28 H 1.09002 * 109.46591 * 59.99948 * 3 2 1 29 29 H 1.09004 * 109.47262 * 300.00494 * 3 2 1 30 30 H 1.08999 * 109.73549 * 54.99133 * 6 4 3 31 31 H 1.09002 * 109.66780 * 294.42319 * 6 4 3 32 32 H 0.96999 * 119.99939 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.58918 * 173.64695 * 18 7 6 34 34 H 1.09008 * 109.58165 * 293.92458 * 18 7 6 35 35 H 1.08997 * 109.49685 * 65.31944 * 19 18 7 36 36 H 1.09005 * 109.49863 * 185.38566 * 19 18 7 37 37 H 0.96705 * 113.99471 * 179.97438 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9343 0.8519 0.8401 6 6 4.0807 0.8369 -1.3170 7 7 5.5441 0.9619 -1.3523 8 6 6.3205 -0.1180 -1.5702 9 8 5.8103 -1.1916 -1.8306 10 6 7.7774 0.0005 -1.4937 11 1 8.2341 0.9703 -1.3621 12 6 8.5794 -1.1429 -1.5969 13 7 8.0270 -2.3156 -1.7620 14 14 10.4387 -0.9915 -1.4999 15 1 10.8199 -0.4030 -0.1910 16 1 11.0527 -2.3368 -1.6359 17 1 10.9218 -0.1144 -2.5965 18 6 6.1449 2.2876 -1.1513 19 6 5.6111 2.8777 0.1576 20 6 4.0811 2.8795 0.1251 21 1 3.6988 3.3215 1.0452 22 8 3.6295 3.6449 -0.9939 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.6477 1.3735 -2.1613 31 1 3.8025 -0.2157 -1.3689 32 1 8.5825 -3.1076 -1.8331 33 1 7.2293 2.1924 -1.0939 34 1 5.8789 2.9392 -1.9837 35 1 5.9565 2.2735 0.9966 36 1 5.9742 3.8992 0.2710 37 1 3.9164 4.5683 -0.9802 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:00 Heat of formation + Delta-G solvation = -105.709514 kcal Electronic energy + Delta-G solvation = -18268.026446 eV Core-core repulsion = 15430.502618 eV Total energy + Delta-G solvation = -2837.523829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23227 -36.75151 -35.20948 -34.00152 -32.49306 -30.92159 -30.22024 -26.88840 -25.44885 -23.99002 -22.44991 -20.58328 -20.02146 -18.88744 -16.67364 -16.45540 -15.69380 -15.07484 -14.64655 -14.37714 -14.03136 -13.86869 -13.61002 -13.22578 -12.68779 -12.52093 -12.01693 -11.87506 -11.71639 -11.45727 -11.22856 -11.02436 -10.93824 -10.83150 -10.68229 -10.41995 -10.26880 -10.20925 -10.13717 -9.65978 -9.41201 -8.82856 -7.53311 -7.11410 -6.17068 -4.61705 3.15791 3.20880 3.22411 4.10378 4.48304 4.59883 4.66121 4.91335 5.15359 5.18473 5.31920 5.44447 5.47550 5.56967 5.77901 5.86755 5.91020 5.98028 6.00055 6.09370 6.17226 6.18771 6.26186 6.33843 6.48391 6.52919 6.56171 6.67771 6.74833 6.92991 7.47744 7.70226 7.87423 8.18281 8.41953 9.04507 9.50280 10.61278 10.80157 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.006924 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.361336 B = 4043.077028 C = 4776.693693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.104 4.104 4 C -0.095 4.095 5 H 0.079 0.921 6 C 0.133 3.867 7 N -0.642 5.642 8 C 0.560 3.440 9 O -0.579 6.579 10 C -0.546 4.546 11 H 0.072 0.928 12 C 0.088 3.912 13 N -0.769 5.769 14 Si 0.906 3.094 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.128 3.872 19 C -0.168 4.168 20 C 0.114 3.886 21 H 0.044 0.956 22 O -0.559 6.559 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 10.404 5.000 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.142 4.142 4 C -0.114 4.114 5 H 0.097 0.903 6 C 0.009 3.991 7 N -0.379 5.379 8 C 0.365 3.635 9 O -0.462 6.462 10 C -0.583 4.583 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.398 5.398 14 Si 0.730 3.270 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.193 1.193 18 C 0.003 3.997 19 C -0.207 4.207 20 C 0.055 3.945 21 H 0.062 0.938 22 O -0.364 6.364 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.893 8.991 4.654 12.838 hybrid contribution 1.264 0.776 0.382 1.531 sum -6.630 9.767 5.036 12.834 Atomic orbital electron populations 1.21756 0.96377 1.01206 1.01290 1.21612 0.95219 0.97255 1.02687 1.21500 0.94480 0.96420 1.01772 1.21685 0.95169 0.93950 1.00637 0.90267 1.21185 0.82789 1.00928 0.94184 1.48137 1.04289 1.07935 1.77565 1.18229 0.87429 0.81397 0.76414 1.90582 1.75232 1.27189 1.53158 1.20950 0.89705 0.94140 1.53478 0.91043 1.25719 0.99999 0.94808 0.92628 1.70006 1.36313 0.98589 1.34893 0.86472 0.83116 0.77995 0.79396 1.19319 1.20558 1.19265 1.21279 0.99200 0.85105 0.94089 1.22654 0.96263 1.00830 1.00989 1.21753 0.92922 0.92121 0.87659 0.93786 1.86554 1.77693 1.25212 1.46936 0.93041 0.93238 0.92932 0.91270 0.92202 0.92791 0.91389 0.93436 0.90035 0.92084 0.89192 0.93720 0.90852 0.91899 0.78553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.13 -1.82 5.70 -26.73 -0.15 -1.98 16 3 C -0.10 -1.47 4.48 -26.74 -0.12 -1.59 16 4 C -0.09 -1.58 2.18 -90.28 -0.20 -1.77 16 5 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 6 C 0.13 2.78 5.10 -3.49 -0.02 2.76 16 7 N -0.64 -15.09 2.97 -174.17 -0.52 -15.60 16 8 C 0.56 16.26 7.61 -12.98 -0.10 16.17 16 9 O -0.58 -19.06 14.48 5.21 0.08 -18.99 16 10 C -0.55 -15.46 8.87 -35.63 -0.32 -15.77 16 11 H 0.07 1.84 5.65 -52.49 -0.30 1.54 16 12 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 13 N -0.77 -23.24 11.84 55.55 0.66 -22.59 16 14 Si 0.91 20.14 29.56 -169.99 -5.02 15.12 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 C 0.13 2.44 6.10 -3.71 -0.02 2.42 16 19 C -0.17 -2.56 5.80 -26.62 -0.15 -2.71 16 20 C 0.11 1.64 3.19 -26.69 -0.09 1.56 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 O -0.56 -7.73 11.52 -35.23 -0.41 -8.13 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.09 6.70 -51.93 -0.35 0.74 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 30 H 0.05 0.99 7.81 -51.93 -0.41 0.58 16 31 H 0.08 1.89 5.76 -51.93 -0.30 1.60 16 32 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 33 H 0.09 1.80 5.30 -51.93 -0.28 1.52 16 34 H 0.04 0.81 7.82 -51.92 -0.41 0.41 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.37 3.47 9.08 45.56 0.41 3.88 16 LS Contribution 293.70 15.07 4.43 4.43 Total: -1.00 -34.32 293.70 -6.64 -40.96 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.96 Total: 4.71 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -0.89 Total: 0.10 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.14 Total: -38.19 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.33 Total: -27.12 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.32 -6.64 -40.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.749 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds