Wall clock time and date at job start Mon Mar 30 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.53002 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.49795 * 54.99673 * 4 3 2 6 6 C 1.53194 * 109.49774 * 294.93052 * 4 3 2 7 7 N 1.46920 * 108.77475 * 185.41322 * 6 4 3 8 8 C 1.34775 * 120.63141 * 233.58453 * 7 6 4 9 9 O 1.21690 * 120.00284 * 174.82823 * 8 7 6 10 10 C 1.46375 * 120.00105 * 354.83589 * 8 7 6 11 11 H 1.08007 * 119.99537 * 342.41680 * 10 8 7 12 12 C 1.40047 * 120.00517 * 162.42496 * 10 8 7 13 13 N 1.30671 * 120.00324 * 170.17925 * 12 10 8 14 14 Si 1.86799 * 119.99565 * 350.17704 * 12 10 8 15 15 H 1.48499 * 109.47306 * 84.76354 * 14 12 10 16 16 H 1.48502 * 109.47167 * 204.76613 * 14 12 10 17 17 H 1.48499 * 109.47345 * 324.76155 * 14 12 10 18 18 C 1.46924 * 118.73837 * 53.61270 * 7 6 4 19 19 C 1.53191 * 108.77744 * 306.38844 * 18 7 6 20 20 C 1.53039 * 109.33818 * 54.61851 * 19 18 7 21 21 H 1.08996 * 109.48409 * 178.64902 * 20 19 18 22 22 O 1.42895 * 109.43276 * 58.68888 * 20 19 18 23 23 H 1.09001 * 109.46880 * 60.00128 * 1 2 3 24 24 H 1.09005 * 109.46842 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46841 * 300.00040 * 1 2 3 26 26 H 1.09001 * 109.47404 * 239.99469 * 2 1 3 27 27 H 1.09006 * 109.47367 * 119.99359 * 2 1 3 28 28 H 1.09001 * 109.47362 * 59.99443 * 3 2 1 29 29 H 1.09001 * 109.47085 * 299.99746 * 3 2 1 30 30 H 1.08996 * 109.58683 * 305.20465 * 6 4 3 31 31 H 1.09003 * 109.58365 * 65.62378 * 6 4 3 32 32 H 0.96996 * 119.99724 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.59187 * 66.17695 * 18 7 6 34 34 H 1.09007 * 109.58657 * 186.45543 * 18 7 6 35 35 H 1.09000 * 109.50282 * 174.59096 * 19 18 7 36 36 H 1.09005 * 109.49707 * 294.65195 * 19 18 7 37 37 H 0.96707 * 114.00079 * 59.95095 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9342 0.8530 -0.8407 6 6 4.0808 0.8340 1.3105 7 7 5.5440 0.9599 1.3515 8 6 6.3205 -0.1203 1.5677 9 8 7.5318 -0.0212 1.5060 10 6 5.7067 -1.4128 1.8765 11 1 4.6802 -1.4573 2.2095 12 6 6.4505 -2.5916 1.7404 13 7 5.9744 -3.7207 2.1943 14 14 8.1232 -2.5498 0.9099 15 1 9.1601 -2.1729 1.9038 16 1 8.4340 -3.8918 0.3549 17 1 8.1052 -1.5517 -0.1895 18 6 6.1448 2.2859 1.1529 19 6 5.6109 2.8783 -0.1551 20 6 4.0809 2.8798 -0.1235 21 1 3.6987 3.3228 -1.0431 22 8 3.6293 3.6439 0.9963 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6444 1.3665 2.1554 31 1 3.8032 -0.2191 1.3568 32 1 6.4894 -4.5371 2.0996 33 1 5.8767 2.9370 1.9850 34 1 7.2293 2.1912 1.0978 35 1 5.9736 3.9001 -0.2666 36 1 5.9569 2.2759 -0.9952 37 1 3.9163 4.5673 0.9839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409435835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:01 Heat of formation + Delta-G solvation = -116.121654 kcal Electronic energy + Delta-G solvation = -18428.482987 eV Core-core repulsion = 15590.507654 eV Total energy + Delta-G solvation = -2837.975333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.43994 -37.22746 -35.31362 -34.17106 -32.78836 -30.98063 -30.72486 -26.79458 -25.74392 -24.28636 -22.53888 -20.70758 -19.91825 -18.97729 -16.94625 -16.56295 -15.91275 -15.21539 -14.74795 -14.58064 -14.11747 -14.01032 -13.64707 -13.34335 -12.80701 -12.41095 -12.28792 -12.21529 -11.98517 -11.65815 -11.39298 -11.08561 -11.01826 -10.92080 -10.74766 -10.49989 -10.31594 -10.26599 -9.96010 -9.59560 -9.37309 -8.98503 -7.89093 -7.45081 -6.59296 -4.78723 3.46222 3.49341 3.71283 4.18893 4.28701 4.45241 4.57420 4.83196 5.05743 5.14569 5.25591 5.40553 5.41770 5.49376 5.51925 5.78367 5.82607 5.89082 5.95280 5.99614 6.10186 6.15425 6.17922 6.30823 6.36892 6.45780 6.47232 6.57281 6.67919 6.80617 7.14328 7.71013 7.78747 7.93080 8.36980 8.76603 9.19401 10.08449 10.42103 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.008971 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.835823 B = 3120.540646 C = 4115.915916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C -0.103 4.103 4 C -0.097 4.097 5 H 0.082 0.918 6 C 0.132 3.868 7 N -0.631 5.631 8 C 0.555 3.445 9 O -0.620 6.620 10 C -0.533 4.533 11 H 0.090 0.910 12 C 0.103 3.897 13 N -0.829 5.829 14 Si 0.963 3.037 15 H -0.277 1.277 16 H -0.320 1.320 17 H -0.269 1.269 18 C 0.124 3.876 19 C -0.166 4.166 20 C 0.113 3.887 21 H 0.047 0.953 22 O -0.559 6.559 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.281 0.719 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 11.109 -5.768 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.141 4.141 4 C -0.117 4.117 5 H 0.100 0.900 6 C 0.009 3.991 7 N -0.364 5.364 8 C 0.364 3.636 9 O -0.512 6.512 10 C -0.569 4.569 11 H 0.108 0.892 12 C -0.114 4.114 13 N -0.459 5.459 14 Si 0.795 3.205 15 H -0.203 1.203 16 H -0.251 1.251 17 H -0.194 1.194 18 C 0.000 4.000 19 C -0.205 4.205 20 C 0.055 3.945 21 H 0.065 0.935 22 O -0.363 6.363 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.849 10.388 -5.565 14.160 hybrid contribution 0.858 0.559 -0.560 1.167 sum -6.991 10.947 -6.125 14.361 Atomic orbital electron populations 1.21755 0.96367 1.01302 1.01232 1.21623 0.95287 0.97034 1.02916 1.21495 0.94083 0.96657 1.01896 1.21641 0.95553 0.93817 1.00642 0.89975 1.21475 0.80786 1.02119 0.94755 1.47687 1.05776 1.06892 1.76055 1.18364 0.85324 0.84144 0.75750 1.90208 1.15439 1.84042 1.61483 1.20750 1.01206 0.88460 1.46460 0.89197 1.25717 0.99833 0.94211 0.91686 1.69565 1.39287 1.00078 1.36971 0.85309 0.81196 0.73336 0.80645 1.20285 1.25114 1.19409 1.21089 0.99119 0.85136 0.94691 1.22619 0.96546 1.00920 1.00431 1.21768 0.92584 0.92320 0.87872 0.93514 1.86552 1.77665 1.25320 1.46807 0.93304 0.92944 0.92943 0.92048 0.91046 0.91309 0.92703 0.92882 0.88473 0.90884 0.93151 0.89947 0.91692 0.90964 0.78467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.13 -1.75 5.69 -26.73 -0.15 -1.90 16 3 C -0.10 -1.37 4.49 -26.73 -0.12 -1.49 16 4 C -0.10 -1.51 2.17 -90.50 -0.20 -1.70 16 5 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 6 C 0.13 2.54 4.93 -3.71 -0.02 2.52 16 7 N -0.63 -14.08 2.97 -174.43 -0.52 -14.60 16 8 C 0.56 15.14 7.21 -12.99 -0.09 15.05 16 9 O -0.62 -18.35 12.12 5.20 0.06 -18.29 16 10 C -0.53 -15.20 9.08 -35.63 -0.32 -15.52 16 11 H 0.09 2.55 6.42 -52.48 -0.34 2.22 16 12 C 0.10 2.97 5.52 -17.37 -0.10 2.88 16 13 N -0.83 -23.72 13.92 55.55 0.77 -22.94 16 14 Si 0.96 25.73 25.83 -169.99 -4.39 21.34 16 15 H -0.28 -7.65 7.11 56.52 0.40 -7.25 16 16 H -0.32 -8.05 7.11 56.52 0.40 -7.65 16 17 H -0.27 -7.47 6.82 56.52 0.39 -7.09 16 18 C 0.12 2.33 6.20 -3.71 -0.02 2.31 16 19 C -0.17 -2.45 5.80 -26.61 -0.15 -2.60 16 20 C 0.11 1.54 3.19 -26.69 -0.09 1.46 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 O -0.56 -7.28 11.52 -35.23 -0.41 -7.69 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.07 6.70 -51.93 -0.35 0.72 16 28 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 1.01 7.81 -51.93 -0.41 0.60 16 31 H 0.10 2.02 4.32 -51.93 -0.22 1.79 16 32 H 0.28 7.41 8.29 -40.82 -0.34 7.07 16 33 H 0.05 0.89 7.81 -51.93 -0.41 0.48 16 34 H 0.08 1.71 6.99 -51.93 -0.36 1.35 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.37 3.24 9.08 45.56 0.41 3.65 16 LS Contribution 290.17 15.07 4.37 4.37 Total: -1.00 -32.55 290.17 -6.03 -38.58 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.03 Total: -0.44 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.89 Total: -0.32 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.25 Total: -37.54 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.34 Total: -25.98 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.39 Total: 21.34 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.55 -6.03 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.544 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds