Wall clock time and date at job start Mon Mar 30 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 C 1.53002 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.49795 * 54.99673 * 4 3 2 6 6 C 1.53194 * 109.49774 * 294.93052 * 4 3 2 7 7 N 1.46920 * 108.77475 * 185.41322 * 6 4 3 8 8 C 1.34775 * 120.63141 * 233.58453 * 7 6 4 9 9 O 1.21690 * 120.00284 * 174.82823 * 8 7 6 10 10 C 1.46375 * 120.00105 * 354.83589 * 8 7 6 11 11 H 1.08007 * 119.99537 * 342.41680 * 10 8 7 12 12 C 1.40047 * 120.00517 * 162.42496 * 10 8 7 13 13 N 1.30671 * 120.00324 * 170.17925 * 12 10 8 14 14 Si 1.86799 * 119.99565 * 350.17704 * 12 10 8 15 15 H 1.48499 * 109.47306 * 84.76354 * 14 12 10 16 16 H 1.48502 * 109.47167 * 204.76613 * 14 12 10 17 17 H 1.48499 * 109.47345 * 324.76155 * 14 12 10 18 18 C 1.46924 * 118.73837 * 53.61270 * 7 6 4 19 19 C 1.53191 * 108.77744 * 306.38844 * 18 7 6 20 20 C 1.53039 * 109.33818 * 54.61851 * 19 18 7 21 21 H 1.08996 * 109.48409 * 178.64902 * 20 19 18 22 22 O 1.42895 * 109.43276 * 58.68888 * 20 19 18 23 23 H 1.09001 * 109.46880 * 60.00128 * 1 2 3 24 24 H 1.09005 * 109.46842 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46841 * 300.00040 * 1 2 3 26 26 H 1.09001 * 109.47404 * 239.99469 * 2 1 3 27 27 H 1.09006 * 109.47367 * 119.99359 * 2 1 3 28 28 H 1.09001 * 109.47362 * 59.99443 * 3 2 1 29 29 H 1.09001 * 109.47085 * 299.99746 * 3 2 1 30 30 H 1.08996 * 109.58683 * 305.20465 * 6 4 3 31 31 H 1.09003 * 109.58365 * 65.62378 * 6 4 3 32 32 H 0.96996 * 119.99724 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.59187 * 66.17695 * 18 7 6 34 34 H 1.09007 * 109.58657 * 186.45543 * 18 7 6 35 35 H 1.09000 * 109.50282 * 174.59096 * 19 18 7 36 36 H 1.09005 * 109.49707 * 294.65195 * 19 18 7 37 37 H 0.96707 * 114.00079 * 59.95095 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9342 0.8530 -0.8407 6 6 4.0808 0.8340 1.3105 7 7 5.5440 0.9599 1.3515 8 6 6.3205 -0.1203 1.5677 9 8 7.5318 -0.0212 1.5060 10 6 5.7067 -1.4128 1.8765 11 1 4.6802 -1.4573 2.2095 12 6 6.4505 -2.5916 1.7404 13 7 5.9744 -3.7207 2.1943 14 14 8.1232 -2.5498 0.9099 15 1 9.1601 -2.1729 1.9038 16 1 8.4340 -3.8918 0.3549 17 1 8.1052 -1.5517 -0.1895 18 6 6.1448 2.2859 1.1529 19 6 5.6109 2.8783 -0.1551 20 6 4.0809 2.8798 -0.1235 21 1 3.6987 3.3228 -1.0431 22 8 3.6293 3.6439 0.9963 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.6444 1.3665 2.1554 31 1 3.8032 -0.2191 1.3568 32 1 6.4894 -4.5371 2.0996 33 1 5.8767 2.9370 1.9850 34 1 7.2293 2.1912 1.0978 35 1 5.9736 3.9001 -0.2666 36 1 5.9569 2.2759 -0.9952 37 1 3.9163 4.5673 0.9839 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409435835.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:01 Heat of formation + Delta-G solvation = -140.014518 kcal Electronic energy + Delta-G solvation = -18429.519059 eV Core-core repulsion = 15590.507654 eV Total energy + Delta-G solvation = -2839.011405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93449 -38.99453 -36.41854 -35.71468 -34.98915 -32.41738 -31.95612 -28.80092 -27.01180 -25.84679 -23.87132 -21.97924 -21.31131 -20.59364 -18.80152 -18.06756 -17.65231 -16.92514 -16.23558 -15.83567 -15.67152 -15.37539 -15.19615 -14.65606 -14.53257 -14.04546 -13.95625 -13.86098 -13.20280 -13.15909 -12.92883 -12.82948 -12.52528 -12.21044 -12.19767 -12.02588 -11.70419 -11.66549 -11.35878 -11.23060 -10.94905 -10.71407 -10.02812 -9.25567 -8.80894 -7.01073 1.29398 1.32614 1.54295 2.05790 2.30789 2.68425 3.25616 3.46431 3.68486 3.88795 4.02997 4.14509 4.26597 4.32141 4.38968 4.47550 4.58388 4.71816 4.80486 4.85451 4.92384 4.94094 4.99865 5.03916 5.13935 5.17753 5.22858 5.30209 5.39951 5.51583 5.58988 5.68548 5.99350 6.24221 6.61686 7.03043 7.13192 7.96484 8.25320 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.008971 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.835823 B = 3120.540646 C = 4115.915916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.092 4.092 4 C -0.096 4.096 5 H 0.071 0.929 6 C 0.133 3.867 7 N -0.631 5.631 8 C 0.549 3.451 9 O -0.649 6.649 10 C -0.551 4.551 11 H 0.080 0.920 12 C 0.071 3.929 13 N -0.848 5.848 14 Si 1.008 2.992 15 H -0.292 1.292 16 H -0.292 1.292 17 H -0.288 1.288 18 C 0.117 3.883 19 C -0.158 4.158 20 C 0.122 3.878 21 H 0.082 0.918 22 O -0.571 6.571 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.292 0.708 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 13.042 -7.051 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.116 4.116 5 H 0.089 0.911 6 C 0.010 3.990 7 N -0.363 5.363 8 C 0.356 3.644 9 O -0.544 6.544 10 C -0.587 4.587 11 H 0.098 0.902 12 C -0.144 4.144 13 N -0.479 5.479 14 Si 0.840 3.160 15 H -0.220 1.220 16 H -0.221 1.221 17 H -0.215 1.215 18 C -0.006 4.006 19 C -0.196 4.196 20 C 0.063 3.937 21 H 0.099 0.901 22 O -0.378 6.378 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.936 12.342 -6.854 16.708 hybrid contribution 1.142 0.028 -0.094 1.146 sum -7.794 12.370 -6.947 16.188 Atomic orbital electron populations 1.21717 0.94483 1.01749 1.02256 1.21626 0.96987 0.97125 1.01418 1.21413 0.92122 0.96464 1.02949 1.21611 0.97186 0.95214 0.97541 0.91112 1.21532 0.78931 1.01166 0.97329 1.47702 1.06906 1.07220 1.74452 1.18307 0.85193 0.85195 0.75676 1.90176 1.16611 1.84916 1.62663 1.20933 1.01017 0.89625 1.47164 0.90225 1.26212 1.01712 0.94301 0.92223 1.69563 1.40275 1.00581 1.37508 0.84683 0.78517 0.73884 0.78925 1.21974 1.22138 1.21508 1.21331 0.97764 0.83575 0.97922 1.22588 0.97589 1.02466 0.96997 1.21653 0.91365 0.91152 0.89511 0.90055 1.86512 1.77675 1.27056 1.46600 0.91608 0.92892 0.92520 0.92557 0.93664 0.91438 0.90184 0.92689 0.90978 0.89771 0.91655 0.92408 0.87700 0.92262 0.75944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.91 71.98 0.71 -2.29 16 2 C -0.13 -3.47 5.69 30.59 0.17 -3.30 16 3 C -0.09 -2.21 4.49 30.59 0.14 -2.08 16 4 C -0.10 -2.82 2.17 -10.71 -0.02 -2.85 16 5 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 6 C 0.13 5.12 4.93 86.36 0.43 5.54 16 7 N -0.63 -28.35 2.97 -824.00 -2.45 -30.80 16 8 C 0.55 30.66 7.21 86.36 0.62 31.28 16 9 O -0.65 -39.27 12.12 -4.32 -0.05 -39.32 16 10 C -0.55 -32.39 9.08 24.83 0.23 -32.16 16 11 H 0.08 4.73 6.42 -2.91 -0.02 4.71 16 12 C 0.07 4.16 5.52 85.30 0.47 4.64 16 13 N -0.85 -48.99 13.92 21.84 0.30 -48.68 16 14 Si 1.01 53.65 25.83 68.60 1.77 55.42 16 15 H -0.29 -16.20 7.11 99.48 0.71 -15.50 16 16 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 17 H -0.29 -16.16 6.82 99.48 0.68 -15.48 16 18 C 0.12 4.28 6.20 86.36 0.54 4.81 16 19 C -0.16 -4.18 5.80 30.67 0.18 -4.00 16 20 C 0.12 2.87 3.19 30.62 0.10 2.96 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 O -0.57 -12.57 11.52 -148.98 -1.72 -14.29 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.39 6.70 -2.38 -0.02 1.37 16 28 H 0.07 1.68 7.86 -2.39 -0.02 1.66 16 29 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 2.08 7.81 -2.39 -0.02 2.06 16 31 H 0.07 3.12 4.32 -2.39 -0.01 3.11 16 32 H 0.29 15.34 8.29 -92.71 -0.77 14.57 16 33 H 0.07 2.19 7.81 -2.39 -0.02 2.17 16 34 H 0.06 2.40 6.99 -2.38 -0.02 2.38 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.39 4.97 9.08 -74.05 -0.67 4.30 16 Total: -1.00 -71.13 290.17 1.77 -69.36 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.36 Total: 5.75 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 3.56 Total: 2.57 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.14 Total: -79.48 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -1.77 Total: -53.61 kcal Atomic # 14 Polarization: 53.65 SS G_CDS: 1.77 Total: 55.42 kcal Total: -71.13 1.77 -69.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409435835.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.656 kcal (2) G-P(sol) polarization free energy of solvation -71.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds