Wall clock time and date at job start Mon Mar 30 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46965 * 2 1 4 4 C 1.52995 * 109.47042 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.45762 * 65.03139 * 4 3 2 6 6 C 1.53038 * 109.45892 * 184.99947 * 4 3 2 7 7 C 1.53198 * 109.31067 * 181.37600 * 6 4 3 8 8 N 1.46915 * 108.77550 * 305.36424 * 7 6 4 9 9 C 1.34780 * 120.63512 * 233.58836 * 8 7 6 10 10 O 1.21688 * 119.99619 * 5.22710 * 9 8 7 11 11 C 1.46371 * 120.00550 * 184.95464 * 9 8 7 12 12 H 1.08002 * 119.99955 * 355.26514 * 11 9 8 13 13 C 1.40050 * 120.00236 * 175.26434 * 11 9 8 14 14 N 1.30673 * 119.99617 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99897 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47436 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47260 * 120.00086 * 15 13 11 18 18 H 1.48506 * 109.46942 * 240.00108 * 15 13 11 19 19 C 1.46932 * 118.74045 * 53.86134 * 8 7 6 20 20 C 1.53037 * 109.45034 * 305.06574 * 4 3 2 21 21 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47061 * 299.99538 * 1 2 3 23 23 H 1.08998 * 109.47179 * 60.00078 * 1 2 3 24 24 H 1.08995 * 109.46808 * 240.00382 * 2 1 3 25 25 H 1.08998 * 109.47179 * 119.99922 * 2 1 3 26 26 H 1.09000 * 109.46900 * 59.99813 * 3 2 1 27 27 H 1.08996 * 109.47111 * 300.00514 * 3 2 1 28 28 H 0.96703 * 113.99942 * 299.97283 * 5 4 3 29 29 H 1.08997 * 109.49770 * 61.42552 * 6 4 3 30 30 H 1.09003 * 109.50046 * 301.32750 * 6 4 3 31 31 H 1.08998 * 109.58385 * 185.57620 * 7 6 4 32 32 H 1.09000 * 109.58627 * 65.15866 * 7 6 4 33 33 H 0.97002 * 119.99178 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58589 * 65.92716 * 19 8 7 35 35 H 1.08999 * 109.58987 * 186.34870 * 19 8 7 36 36 H 1.08998 * 109.49308 * 298.56508 * 20 4 3 37 37 H 1.08992 * 109.50102 * 58.66872 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0465 0.8736 -1.2205 6 6 4.0797 2.8801 0.1264 7 6 5.6113 2.8793 0.0921 8 7 6.1071 1.9700 1.1341 9 6 7.0008 2.3957 2.0487 10 8 7.3328 3.5661 2.0760 11 6 7.5676 1.4516 3.0130 12 1 7.2138 0.4316 3.0420 13 6 8.5686 1.8708 3.8982 14 7 8.9963 3.1051 3.8634 15 14 9.2923 0.6657 5.1283 16 1 8.6414 -0.6590 4.9653 17 1 10.7522 0.5329 4.8910 18 1 9.0584 1.1653 6.5071 19 6 5.6149 0.5857 1.1564 20 6 4.0791 0.6137 1.1821 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.7614 -0.0388 -1.3670 29 1 3.7371 3.3064 1.0692 30 1 3.6975 3.4755 -0.7028 31 1 5.9815 3.8871 0.2803 32 1 5.9548 2.5381 -0.8845 33 1 9.6900 3.3953 4.4763 34 1 5.9587 0.0612 0.2649 35 1 5.9875 0.0797 2.0470 36 1 3.7365 1.0615 2.1150 37 1 3.6965 -0.4039 1.1043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489961240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:36 Heat of formation + Delta-G solvation = -102.905700 kcal Electronic energy + Delta-G solvation = -18228.300043 eV Core-core repulsion = 15390.897797 eV Total energy + Delta-G solvation = -2837.402246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.50534 -37.11219 -34.40009 -33.99112 -32.48361 -31.12900 -30.26233 -27.33493 -26.06213 -23.37217 -22.64040 -21.16592 -20.02355 -18.85165 -16.70303 -16.14952 -15.69013 -15.26824 -14.68281 -14.34197 -14.19188 -13.88954 -13.72047 -13.03840 -12.84250 -12.45107 -12.20097 -11.93207 -11.69609 -11.51837 -11.32081 -11.25877 -11.06344 -10.94540 -10.72631 -10.60998 -10.55264 -10.28071 -10.11902 -9.69175 -9.38196 -8.83876 -7.52573 -7.11282 -6.16931 -4.61419 3.13484 3.21558 3.25572 4.10838 4.43880 4.58820 4.64587 4.71403 4.88916 4.92966 5.18036 5.28467 5.42379 5.56578 5.60890 5.74163 5.78150 5.80931 5.93907 5.95240 6.01320 6.12963 6.17554 6.21109 6.30055 6.38867 6.52241 6.60795 6.69652 6.90600 7.48155 7.70685 7.88743 8.19070 8.42560 9.05009 9.50827 10.61434 10.80506 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035657 B = 0.006094 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.080326 B = 4593.576597 C = 5041.064616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.145 4.145 4 C 0.137 3.863 5 O -0.553 6.553 6 C -0.116 4.116 7 C 0.125 3.875 8 N -0.641 5.641 9 C 0.559 3.441 10 O -0.580 6.580 11 C -0.545 4.545 12 H 0.073 0.927 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.905 3.095 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.128 3.872 20 C -0.161 4.161 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.366 0.634 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.267 0.733 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 -7.556 -6.014 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.183 4.183 4 C 0.097 3.903 5 O -0.359 6.359 6 C -0.155 4.155 7 C 0.001 3.999 8 N -0.379 5.379 9 C 0.365 3.635 10 O -0.463 6.463 11 C -0.582 4.582 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.730 3.270 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C 0.004 3.996 20 C -0.200 4.200 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.213 0.787 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.650 -6.150 -5.970 15.280 hybrid contribution -0.080 -1.235 0.670 1.407 sum -12.731 -7.385 -5.300 15.643 Atomic orbital electron populations 1.21755 0.95942 1.01375 1.01725 1.21628 0.95916 0.97152 1.02074 1.22310 0.96260 0.97049 1.02639 1.21163 0.90928 0.94217 0.84024 1.86588 1.77199 1.31591 1.40507 1.21901 0.98335 0.93539 1.01713 1.21021 0.91160 0.96311 0.91394 1.48125 1.47563 1.09966 1.32236 1.18254 0.77227 0.88350 0.79710 1.90581 1.62944 1.18869 1.73881 1.21026 1.21829 0.97235 1.18070 0.90940 1.25732 0.95580 0.95065 0.96832 1.70035 1.22192 1.15953 1.31560 0.86353 0.79119 0.81164 0.80344 1.18783 1.20163 1.20188 1.21389 0.90981 0.85526 1.01743 1.22765 0.98722 0.99625 0.98891 0.92926 0.92777 0.92911 0.92162 0.91309 0.91225 0.91492 0.78729 0.90864 0.91624 0.90130 0.93310 0.92207 0.93629 0.89229 0.90995 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.23 5.23 -26.73 -0.14 -1.37 16 3 C -0.14 -1.65 4.51 -26.73 -0.12 -1.77 16 4 C 0.14 1.95 0.73 -90.58 -0.07 1.89 16 5 O -0.55 -7.83 11.69 -35.23 -0.41 -8.25 16 6 C -0.12 -1.96 5.11 -26.61 -0.14 -2.09 16 7 C 0.13 2.64 6.20 -3.71 -0.02 2.61 16 8 N -0.64 -15.12 2.97 -174.16 -0.52 -15.64 16 9 C 0.56 16.30 7.62 -12.99 -0.10 16.20 16 10 O -0.58 -19.18 14.45 5.20 0.08 -19.10 16 11 C -0.54 -15.47 8.86 -35.63 -0.32 -15.79 16 12 H 0.07 1.88 5.68 -52.49 -0.30 1.58 16 13 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 14 N -0.77 -23.27 11.84 55.55 0.66 -22.62 16 15 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 16 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 19 C 0.13 2.46 6.10 -3.48 -0.02 2.43 16 20 C -0.16 -2.44 4.65 -26.39 -0.12 -2.56 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.51 6.89 -51.93 -0.36 0.16 16 25 H 0.07 0.66 6.31 -51.93 -0.33 0.33 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.37 3.82 7.53 45.56 0.34 4.17 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.88 6.99 -51.93 -0.36 1.52 16 32 H 0.05 1.01 7.81 -51.93 -0.41 0.60 16 33 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 34 H 0.05 0.83 7.81 -51.93 -0.41 0.43 16 35 H 0.09 1.80 5.36 -51.93 -0.28 1.52 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.81 6.26 -51.93 -0.33 0.49 16 LS Contribution 290.33 15.07 4.38 4.38 Total: -1.00 -34.38 290.33 -6.55 -40.93 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.93 Total: 4.13 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.77 Total: 1.02 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.14 Total: -38.26 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.34 Total: -27.35 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.38 -6.55 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489961240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.977 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds