Wall clock time and date at job start Mon Mar 30 2020 03:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46965 * 2 1 4 4 C 1.52995 * 109.47042 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.45762 * 65.03139 * 4 3 2 6 6 C 1.53038 * 109.45892 * 184.99947 * 4 3 2 7 7 C 1.53198 * 109.31067 * 181.37600 * 6 4 3 8 8 N 1.46915 * 108.77550 * 305.36424 * 7 6 4 9 9 C 1.34780 * 120.63512 * 233.58836 * 8 7 6 10 10 O 1.21688 * 119.99619 * 5.22710 * 9 8 7 11 11 C 1.46371 * 120.00550 * 184.95464 * 9 8 7 12 12 H 1.08002 * 119.99955 * 355.26514 * 11 9 8 13 13 C 1.40050 * 120.00236 * 175.26434 * 11 9 8 14 14 N 1.30673 * 119.99617 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99897 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47436 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47260 * 120.00086 * 15 13 11 18 18 H 1.48506 * 109.46942 * 240.00108 * 15 13 11 19 19 C 1.46932 * 118.74045 * 53.86134 * 8 7 6 20 20 C 1.53037 * 109.45034 * 305.06574 * 4 3 2 21 21 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47061 * 299.99538 * 1 2 3 23 23 H 1.08998 * 109.47179 * 60.00078 * 1 2 3 24 24 H 1.08995 * 109.46808 * 240.00382 * 2 1 3 25 25 H 1.08998 * 109.47179 * 119.99922 * 2 1 3 26 26 H 1.09000 * 109.46900 * 59.99813 * 3 2 1 27 27 H 1.08996 * 109.47111 * 300.00514 * 3 2 1 28 28 H 0.96703 * 113.99942 * 299.97283 * 5 4 3 29 29 H 1.08997 * 109.49770 * 61.42552 * 6 4 3 30 30 H 1.09003 * 109.50046 * 301.32750 * 6 4 3 31 31 H 1.08998 * 109.58385 * 185.57620 * 7 6 4 32 32 H 1.09000 * 109.58627 * 65.15866 * 7 6 4 33 33 H 0.97002 * 119.99178 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58589 * 65.92716 * 19 8 7 35 35 H 1.08999 * 109.58987 * 186.34870 * 19 8 7 36 36 H 1.08998 * 109.49308 * 298.56508 * 20 4 3 37 37 H 1.08992 * 109.50102 * 58.66872 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0465 0.8736 -1.2205 6 6 4.0797 2.8801 0.1264 7 6 5.6113 2.8793 0.0921 8 7 6.1071 1.9700 1.1341 9 6 7.0008 2.3957 2.0487 10 8 7.3328 3.5661 2.0760 11 6 7.5676 1.4516 3.0130 12 1 7.2138 0.4316 3.0420 13 6 8.5686 1.8708 3.8982 14 7 8.9963 3.1051 3.8634 15 14 9.2923 0.6657 5.1283 16 1 8.6414 -0.6590 4.9653 17 1 10.7522 0.5329 4.8910 18 1 9.0584 1.1653 6.5071 19 6 5.6149 0.5857 1.1564 20 6 4.0791 0.6137 1.1821 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.7614 -0.0388 -1.3670 29 1 3.7371 3.3064 1.0692 30 1 3.6975 3.4755 -0.7028 31 1 5.9815 3.8871 0.2803 32 1 5.9548 2.5381 -0.8845 33 1 9.6900 3.3953 4.4763 34 1 5.9587 0.0612 0.2649 35 1 5.9875 0.0797 2.0470 36 1 3.7365 1.0615 2.1150 37 1 3.6965 -0.4039 1.1043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489961240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:35 Heat of formation + Delta-G solvation = -128.319399 kcal Electronic energy + Delta-G solvation = -18229.402064 eV Core-core repulsion = 15390.897797 eV Total energy + Delta-G solvation = -2838.504267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89069 -38.95452 -36.09646 -34.91278 -34.64715 -32.61621 -31.67814 -28.88233 -27.75413 -24.74355 -24.10570 -22.45894 -21.29637 -20.52505 -18.55244 -17.78829 -17.29260 -16.37903 -16.18500 -15.90007 -15.65095 -15.40709 -15.14801 -14.48595 -14.09581 -13.85745 -13.62353 -13.40499 -13.10852 -12.97552 -12.78377 -12.62039 -12.56191 -12.24209 -12.17407 -12.08261 -11.90562 -11.88702 -11.45909 -10.98587 -10.94116 -10.61284 -9.76865 -9.04271 -8.29006 -6.83915 1.39644 1.40009 1.57918 2.24028 2.46094 2.87610 3.37026 3.57401 3.74519 3.84425 3.91990 4.20132 4.24933 4.34233 4.48837 4.52252 4.61508 4.71735 4.84206 4.84630 4.90735 4.95081 4.98619 5.08230 5.12240 5.18149 5.32927 5.35324 5.39632 5.48782 5.49599 5.79406 6.15578 6.43205 6.87829 6.98214 7.45289 8.47405 8.67947 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035657 B = 0.006094 C = 0.005553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.080326 B = 4593.576597 C = 5041.064616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.135 4.135 4 C 0.145 3.855 5 O -0.566 6.566 6 C -0.112 4.112 7 C 0.124 3.876 8 N -0.644 5.644 9 C 0.537 3.463 10 O -0.636 6.636 11 C -0.569 4.569 12 H 0.095 0.905 13 C 0.027 3.973 14 N -0.825 5.825 15 Si 0.998 3.002 16 H -0.243 1.243 17 H -0.269 1.269 18 H -0.269 1.269 19 C 0.122 3.878 20 C -0.152 4.152 21 H 0.062 0.938 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.385 0.615 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.273 0.727 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 -10.482 -6.041 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.173 4.173 4 C 0.104 3.896 5 O -0.374 6.374 6 C -0.150 4.150 7 C 0.001 3.999 8 N -0.380 5.380 9 C 0.344 3.656 10 O -0.524 6.524 11 C -0.605 4.605 12 H 0.113 0.887 13 C -0.188 4.188 14 N -0.454 5.454 15 Si 0.817 3.183 16 H -0.166 1.166 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.001 4.001 20 C -0.190 4.190 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.235 0.765 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.268 -9.132 -6.043 17.986 hybrid contribution 0.387 -0.306 0.572 0.755 sum -13.882 -9.438 -5.470 17.655 Atomic orbital electron populations 1.21745 0.95165 1.02108 1.01738 1.21622 0.96586 0.95489 1.02795 1.22197 0.93530 0.98831 1.02765 1.20987 0.92782 0.91986 0.83818 1.86549 1.77628 1.33252 1.39959 1.21839 0.94744 0.96432 1.02026 1.21072 0.94299 0.93967 0.90610 1.48041 1.46466 1.12125 1.31354 1.18742 0.78012 0.87945 0.80948 1.90526 1.65170 1.20983 1.75740 1.21547 1.22370 0.98149 1.18435 0.88748 1.27041 0.95557 0.97212 0.98966 1.70216 1.23184 1.18954 1.33091 0.84976 0.78140 0.78546 0.76669 1.16612 1.19401 1.19390 1.21613 0.93946 0.82797 1.01744 1.22708 0.95325 1.02125 0.98871 0.91859 0.93085 0.92670 0.90750 0.91212 0.91532 0.91026 0.76507 0.91875 0.89751 0.93749 0.92918 0.91665 0.92380 0.90319 0.92175 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.13 -1.90 5.23 30.60 0.16 -1.74 16 3 C -0.14 -2.68 4.51 30.59 0.14 -2.54 16 4 C 0.14 3.79 0.73 -10.77 -0.01 3.78 16 5 O -0.57 -14.28 11.69 -148.98 -1.74 -16.02 16 6 C -0.11 -3.72 5.11 30.67 0.16 -3.56 16 7 C 0.12 5.39 6.20 86.37 0.54 5.93 16 8 N -0.64 -31.08 2.97 -823.14 -2.44 -33.53 16 9 C 0.54 32.64 7.62 86.36 0.66 33.30 16 10 O -0.64 -44.62 14.45 -4.31 -0.06 -44.69 16 11 C -0.57 -32.83 8.86 24.83 0.22 -32.61 16 12 H 0.09 4.85 5.68 -2.91 -0.02 4.83 16 13 C 0.03 1.52 5.50 85.30 0.47 1.99 16 14 N -0.82 -51.69 11.84 21.84 0.26 -51.43 16 15 Si 1.00 41.28 29.56 68.60 2.03 43.31 16 16 H -0.24 -9.16 7.11 99.48 0.71 -8.45 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 19 C 0.12 4.55 6.10 86.51 0.53 5.07 16 20 C -0.15 -4.24 4.65 30.82 0.14 -4.10 16 21 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 0.92 6.89 -2.39 -0.02 0.90 16 25 H 0.07 1.04 6.31 -2.39 -0.02 1.03 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.39 6.44 7.53 -74.05 -0.56 5.88 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.04 2.21 6.99 -2.39 -0.02 2.20 16 32 H 0.05 2.21 7.81 -2.39 -0.02 2.19 16 33 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 34 H 0.06 2.02 7.81 -2.39 -0.02 2.00 16 35 H 0.08 3.08 5.36 -2.39 -0.01 3.07 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 2.15 6.26 -2.39 -0.01 2.14 16 Total: -1.00 -78.69 290.33 2.26 -76.42 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.51 Total: 21.70 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 3.71 Total: 4.22 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -2.18 Total: -84.96 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -1.80 Total: -60.71 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -78.69 2.26 -76.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489961240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.897 kcal (2) G-P(sol) polarization free energy of solvation -78.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds