Wall clock time and date at job start Mon Mar 30 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 110.67618 * 2 1 4 4 C 1.54988 * 110.62272 * 237.03194 * 2 1 3 5 5 C 1.54816 * 102.09180 * 278.52452 * 4 2 1 6 6 H 1.09005 * 110.59949 * 97.84718 * 5 4 2 7 7 C 1.50700 * 110.48657 * 220.43978 * 5 4 2 8 8 O 1.21289 * 120.00228 * 28.14047 * 7 5 4 9 9 N 1.34775 * 119.99542 * 208.13113 * 7 5 4 10 10 C 1.37106 * 119.99358 * 180.02562 * 9 7 5 11 11 H 1.07999 * 120.00497 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99769 * 179.97438 * 10 9 7 13 13 N 1.31414 * 120.00180 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99984 * 359.73239 * 12 10 9 15 15 H 1.48507 * 109.46918 * 270.27018 * 14 12 10 16 16 H 1.48500 * 109.47472 * 30.26744 * 14 12 10 17 17 H 1.48496 * 109.47362 * 150.27108 * 14 12 10 18 18 C 1.54102 * 104.18744 * 339.11692 * 5 4 2 19 19 C 1.53002 * 109.87944 * 117.39268 * 18 5 4 20 20 C 1.52999 * 109.87837 * 238.39786 * 18 5 4 21 21 O 1.43745 * 107.29095 * 357.97291 * 18 5 4 22 22 H 1.08998 * 109.47302 * 286.63211 * 1 2 3 23 23 H 1.09007 * 109.46800 * 46.62960 * 1 2 3 24 24 H 1.08991 * 109.46969 * 166.62719 * 1 2 3 25 25 H 1.08994 * 109.47107 * 181.50899 * 3 2 1 26 26 H 1.08999 * 109.46652 * 301.50567 * 3 2 1 27 27 H 1.08999 * 109.47145 * 61.50790 * 3 2 1 28 28 H 1.09002 * 110.91121 * 160.32647 * 4 2 1 29 29 H 1.09001 * 110.90664 * 36.71792 * 4 2 1 30 30 H 0.96988 * 120.00591 * 0.02562 * 9 7 5 31 31 H 0.96996 * 120.00090 * 179.72893 * 13 12 10 32 32 H 1.08994 * 109.46902 * 66.58760 * 19 18 5 33 33 H 1.08990 * 109.47056 * 186.58955 * 19 18 5 34 34 H 1.08999 * 109.46940 * 306.59120 * 19 18 5 35 35 H 1.09000 * 109.47168 * 61.19069 * 20 18 5 36 36 H 1.08997 * 109.46953 * 181.19461 * 20 18 5 37 37 H 1.08998 * 109.46895 * 301.18848 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4315 0.0000 4 6 2.0759 -0.7894 -1.2170 5 6 1.9801 -2.2536 -0.7233 6 1 1.0728 -2.7265 -1.0993 7 6 3.1963 -3.0346 -1.1498 8 8 4.2551 -2.4664 -1.3141 9 7 3.1073 -4.3647 -1.3485 10 6 4.2139 -5.0753 -1.7360 11 1 5.1569 -4.5695 -1.8817 12 6 4.1224 -6.4467 -1.9404 13 7 5.1829 -7.1278 -2.3123 14 14 2.4935 -7.3232 -1.6798 15 1 2.3931 -7.7718 -0.2677 16 1 1.3765 -6.3930 -1.9841 17 1 2.4157 -8.5014 -2.5802 18 6 1.9283 -2.1318 0.8121 19 6 0.5994 -2.6826 1.3331 20 6 3.0920 -2.9057 1.4348 21 8 2.0383 -0.7352 1.1339 22 1 -0.3634 0.2941 0.9846 23 1 -0.3633 0.7058 -0.7471 24 1 -0.3633 -0.9997 -0.2377 25 1 3.1596 1.4087 -0.0271 26 1 1.6960 1.9610 -0.8762 27 1 1.7399 1.9446 0.9032 28 1 3.1103 -0.5161 -1.4257 29 1 1.4490 -0.6331 -2.0949 30 1 2.2605 -4.8191 -1.2173 31 1 5.1199 -8.0857 -2.4511 32 1 0.5568 -3.7571 1.1555 33 1 0.5197 -2.4877 2.4025 34 1 -0.2250 -2.1953 0.8125 35 1 4.0356 -2.4829 1.0896 36 1 3.0369 -2.8328 2.5209 37 1 3.0326 -3.9526 1.1375 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528328934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:24 Heat of formation + Delta-G solvation = -88.543010 kcal Electronic energy + Delta-G solvation = -18730.046300 eV Core-core repulsion = 15893.266867 eV Total energy + Delta-G solvation = -2836.779433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55493 -37.88167 -34.05599 -33.96863 -32.29541 -31.55801 -29.62291 -27.86577 -26.49321 -25.47589 -23.15065 -20.64416 -19.95414 -19.12924 -17.95234 -16.18297 -15.69915 -15.29986 -14.92424 -14.68226 -13.95209 -13.62813 -13.45266 -12.99064 -12.76151 -12.66675 -12.56129 -12.27560 -12.12794 -11.83796 -11.72193 -11.58006 -11.32850 -11.19672 -10.93052 -10.65157 -10.48507 -10.41878 -10.23119 -9.98794 -9.58068 -9.44737 -8.50489 -8.19698 -6.33407 -3.84619 3.00168 3.04458 3.13117 3.62585 3.94761 4.07853 4.51076 4.76607 4.91728 5.00846 5.14340 5.18758 5.21310 5.35349 5.48825 5.54588 5.61684 5.64580 5.78372 5.82009 5.88759 6.00742 6.01444 6.11174 6.15189 6.21182 6.31044 6.36005 6.43623 6.55010 6.78137 7.29183 7.54807 8.12418 8.56884 8.92449 9.40324 9.80226 10.79651 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035988 B = 0.007369 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.842502 B = 3798.834998 C = 4065.603896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.131 4.131 6 H 0.086 0.914 7 C 0.467 3.533 8 O -0.571 6.571 9 N -0.588 5.588 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.043 3.957 13 N -0.880 5.880 14 Si 0.875 3.125 15 H -0.270 1.270 16 H -0.269 1.269 17 H -0.276 1.276 18 C 0.118 3.882 19 C -0.172 4.172 20 C -0.152 4.152 21 O -0.356 6.356 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.370 0.630 31 H 0.273 0.727 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 10.040 5.138 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.056 3.944 3 C -0.193 4.193 4 C -0.166 4.166 5 C -0.153 4.153 6 H 0.104 0.896 7 C 0.253 3.747 8 O -0.454 6.454 9 N -0.226 5.226 10 C -0.434 4.434 11 H 0.138 0.862 12 C -0.160 4.160 13 N -0.520 5.520 14 Si 0.702 3.298 15 H -0.195 1.195 16 H -0.195 1.195 17 H -0.201 1.201 18 C 0.078 3.922 19 C -0.229 4.229 20 C -0.209 4.209 21 O -0.276 6.276 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.203 0.797 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.555 10.277 5.157 16.301 hybrid contribution -1.403 -1.127 -0.071 1.801 sum -12.958 9.150 5.086 16.658 Atomic orbital electron populations 1.22449 0.95344 1.02494 1.02343 1.22452 0.92898 0.93024 0.86011 1.21718 1.02142 0.93567 1.01896 1.23126 1.03958 0.92235 0.97245 1.22663 0.98898 0.97606 0.96137 0.89604 1.19301 0.89451 0.82462 0.83466 1.90545 1.29971 1.69040 1.55885 1.42287 1.11410 1.06959 1.61919 1.19450 0.90810 0.90495 1.42627 0.86220 1.25028 0.97353 0.96202 0.97427 1.69617 1.28368 1.08275 1.45698 0.86734 0.83485 0.80417 0.79201 1.19494 1.19492 1.20098 1.21851 0.95511 0.82670 0.92189 1.22553 0.96941 1.01340 1.02053 1.22040 0.98362 1.00206 1.00269 1.88908 1.83803 1.16152 1.38705 0.91875 0.91828 0.91609 0.91509 0.91414 0.92172 0.88314 0.90680 0.79731 0.91592 0.91665 0.91785 0.91587 0.90437 0.92570 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 7.97 37.16 0.30 -1.58 16 2 C 0.10 1.32 1.25 -89.57 -0.11 1.21 16 3 C -0.14 -1.63 8.99 37.16 0.33 -1.29 16 4 C -0.13 -2.03 5.56 -24.72 -0.14 -2.17 16 5 C -0.13 -2.29 2.57 -90.24 -0.23 -2.52 16 6 H 0.09 1.31 7.70 -51.93 -0.40 0.91 16 7 C 0.47 10.60 4.73 -10.99 -0.05 10.55 16 8 O -0.57 -15.24 14.59 5.55 0.08 -15.16 16 9 N -0.59 -13.92 4.57 -10.96 -0.05 -13.97 16 10 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 13 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 14 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.12 1.93 1.14 -90.04 -0.10 1.83 16 19 C -0.17 -2.27 8.29 37.16 0.31 -1.96 16 20 C -0.15 -2.76 7.72 37.16 0.29 -2.47 16 21 O -0.36 -5.91 10.36 -35.23 -0.36 -6.28 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 24 H 0.07 0.72 5.18 -51.93 -0.27 0.45 16 25 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.83 6.80 -51.93 -0.35 1.47 16 29 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 30 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.77 4.99 -51.93 -0.26 0.51 16 35 H 0.08 1.64 7.00 -51.93 -0.36 1.27 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.42 7.15 -51.93 -0.37 1.05 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -31.36 289.25 -5.18 -36.54 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.60 Total: 10.75 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 0.34 Total: -6.02 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.72 Total: -38.74 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.28 Total: -21.43 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.36 -5.18 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528328934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.002 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds