Wall clock time and date at job start Mon Mar 30 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 114.00041 * 2 1 4 4 C 1.53004 * 109.47084 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47193 * 63.58967 * 4 3 2 6 6 C 1.37095 * 119.99938 * 266.30945 * 5 4 3 7 7 H 1.07994 * 120.00498 * 142.40931 * 6 5 4 8 8 C 1.38956 * 119.99604 * 322.40011 * 6 5 4 9 9 N 1.31414 * 119.99468 * 160.85390 * 8 6 5 10 10 Si 1.86792 * 120.00328 * 340.85459 * 8 6 5 11 11 H 1.48501 * 109.47206 * 95.23413 * 10 8 6 12 12 H 1.48495 * 109.47226 * 215.23266 * 10 8 6 13 13 H 1.48496 * 109.47076 * 335.23477 * 10 8 6 14 14 C 1.34773 * 119.99935 * 86.30461 * 5 4 3 15 15 O 1.21289 * 120.00246 * 359.97438 * 14 5 4 16 16 C 1.50703 * 119.99738 * 180.02562 * 14 5 4 17 17 C 1.53787 * 113.61259 * 180.02562 * 16 14 5 18 18 C 1.53788 * 87.07887 * 89.11082 * 17 16 14 19 19 C 1.53007 * 113.60931 * 139.98334 * 18 17 16 20 20 C 1.53777 * 87.17259 * 25.39244 * 18 17 16 21 21 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.47224 * 300.00412 * 1 2 3 23 23 H 1.09002 * 109.46937 * 59.99830 * 1 2 3 24 24 H 1.09001 * 109.47004 * 60.00453 * 3 2 1 25 25 H 1.08994 * 109.46821 * 299.99724 * 3 2 1 26 26 H 1.09005 * 109.47095 * 303.59290 * 4 3 2 27 27 H 1.08993 * 109.47257 * 183.59044 * 4 3 2 28 28 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 29 29 H 1.08995 * 112.91339 * 48.74697 * 16 14 5 30 30 H 1.08999 * 113.61465 * 334.56453 * 17 16 14 31 31 H 1.08997 * 113.60968 * 203.65785 * 17 16 14 32 32 H 1.08994 * 113.61275 * 270.79697 * 18 17 16 33 33 H 1.09001 * 109.47162 * 61.52819 * 19 18 17 34 34 H 1.09002 * 109.46688 * 301.52833 * 19 18 17 35 35 H 1.09000 * 109.46756 * 181.52563 * 19 18 17 36 36 H 1.08999 * 113.61559 * 89.15790 * 20 18 17 37 37 H 1.09004 * 113.60870 * 220.06192 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9733 0.5339 -1.2380 6 6 4.1673 -0.8229 -1.2673 7 1 3.8945 -1.3886 -2.1459 8 6 4.7151 -1.4703 -0.1666 9 7 4.5629 -2.7679 -0.0246 10 14 5.6679 -0.4963 1.1112 11 1 4.7628 -0.1291 2.2298 12 1 6.7867 -1.3230 1.6308 13 1 6.2115 0.7375 0.4889 14 6 4.1852 1.2691 -2.3475 15 8 4.0131 2.4694 -2.3217 16 6 4.6350 0.5995 -3.6205 17 6 4.8326 1.5749 -4.7930 18 6 6.2817 1.7428 -4.3063 19 6 7.3052 1.8125 -5.4415 20 6 6.1523 0.3451 -3.6783 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8531 0.5890 0.8552 27 1 3.9787 2.1783 0.0637 28 1 4.9450 -3.2198 0.7440 29 1 4.0352 -0.2742 -3.8753 30 1 4.2362 2.4834 -4.7103 31 1 4.7528 1.1024 -5.7720 32 1 6.4067 2.5406 -3.5742 33 1 7.0936 2.6783 -6.0689 34 1 7.2439 0.9049 -6.0420 35 1 8.3072 1.9038 -5.0221 36 1 6.4340 -0.4641 -4.3521 37 1 6.6198 0.2624 -2.6971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576442896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:44 Heat of formation + Delta-G solvation = -71.031239 kcal Electronic energy + Delta-G solvation = -18515.005264 eV Core-core repulsion = 15678.985198 eV Total energy + Delta-G solvation = -2836.020066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40870 -39.24100 -38.16123 -36.59861 -33.91941 -31.65724 -30.35648 -27.29786 -26.85154 -26.42132 -25.15433 -23.40225 -21.43731 -20.14351 -18.47474 -17.98710 -17.49230 -17.06492 -16.43216 -16.28572 -16.12199 -15.74554 -15.17896 -14.85755 -14.33463 -14.26148 -14.12366 -13.57936 -13.37043 -13.15880 -13.09422 -12.77697 -12.53098 -12.43819 -12.05156 -11.93865 -11.76714 -11.70301 -11.05943 -11.00843 -10.92402 -10.60741 -10.32603 -9.71670 -8.41315 -6.00773 1.18529 1.30035 1.39625 1.87645 2.21767 2.55995 2.89965 3.12640 3.76394 3.81623 3.92378 4.01007 4.11751 4.14439 4.35510 4.37749 4.51737 4.53511 4.60622 4.62444 4.73491 4.82127 4.86608 4.88108 4.92737 5.00804 5.06910 5.28389 5.30233 5.47023 5.50596 5.68313 6.12519 6.28455 6.37046 7.03881 7.46686 7.80594 8.73580 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.009887 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.400464 B = 2831.324788 C = 3514.471906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.090 3.910 5 N -0.464 5.464 6 C -0.310 4.310 7 H 0.078 0.922 8 C 0.032 3.968 9 N -0.900 5.900 10 Si 0.922 3.078 11 H -0.264 1.264 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.491 3.509 15 O -0.617 6.617 16 C -0.124 4.124 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.131 4.131 20 C -0.106 4.106 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.077 0.923 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.275 0.725 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 6.310 -4.117 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.017 4.017 4 C -0.033 4.033 5 N -0.184 5.184 6 C -0.438 4.438 7 H 0.095 0.905 8 C -0.171 4.171 9 N -0.538 5.538 10 Si 0.749 3.251 11 H -0.190 1.190 12 H -0.213 1.213 13 H -0.192 1.192 14 C 0.282 3.718 15 O -0.504 6.504 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.129 4.129 19 C -0.188 4.188 20 C -0.144 4.144 21 H 0.106 0.894 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.445 6.539 -3.967 7.661 hybrid contribution -0.019 0.101 1.075 1.080 sum -0.464 6.640 -2.891 7.257 Atomic orbital electron populations 1.22873 0.80415 1.03208 1.00449 1.88144 1.20697 1.27532 1.95353 1.22788 0.93241 0.85093 1.00574 1.21880 0.94346 0.98330 0.88734 1.43726 1.58440 1.07307 1.08893 1.18688 1.40862 0.80393 1.03877 0.90468 1.25710 0.96657 0.95785 0.98948 1.69810 1.43165 1.10180 1.30642 0.86226 0.79126 0.79402 0.80340 1.19021 1.21300 1.19181 1.20503 0.78905 0.86013 0.86392 1.90479 1.58188 1.15634 1.86135 1.22117 0.99378 0.99701 0.93271 1.22858 0.96490 0.98445 0.96744 1.22420 0.95796 0.96361 0.98320 1.21665 0.97678 1.02577 0.96874 1.22834 0.92843 0.98100 1.00642 0.89374 0.92546 0.93997 0.90506 0.93911 0.91639 0.89422 0.91512 0.89711 0.92178 0.87350 0.91759 0.91658 0.91362 0.92426 0.87756 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -17.13 10.30 -148.98 -1.53 -18.67 16 3 C 0.06 2.40 6.27 71.98 0.45 2.85 16 4 C 0.09 4.05 4.42 86.38 0.38 4.43 16 5 N -0.46 -22.86 2.15 -635.54 -1.36 -24.22 16 6 C -0.31 -16.62 8.73 84.04 0.73 -15.89 16 7 H 0.08 4.45 7.00 -2.91 -0.02 4.43 16 8 C 0.03 1.74 5.34 84.93 0.45 2.20 16 9 N -0.90 -51.37 13.96 21.67 0.30 -51.07 16 10 Si 0.92 43.09 24.82 68.60 1.70 44.79 16 11 H -0.26 -11.73 6.71 99.48 0.67 -11.06 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.27 -12.51 7.10 99.48 0.71 -11.80 16 14 C 0.49 23.17 6.87 87.66 0.60 23.78 16 15 O -0.62 -30.58 15.39 -3.06 -0.05 -30.63 16 16 C -0.12 -4.93 3.24 -10.95 -0.04 -4.97 16 17 C -0.11 -3.50 7.02 31.12 0.22 -3.28 16 18 C -0.11 -3.50 4.01 -10.26 -0.04 -3.55 16 19 C -0.13 -3.04 9.70 71.98 0.70 -2.34 16 20 C -0.11 -3.79 7.17 31.18 0.22 -3.57 16 21 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 22 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 23 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 3.04 3.21 -2.38 -0.01 3.03 16 27 H 0.09 3.76 7.54 -2.39 -0.02 3.74 16 28 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.08 3.45 7.25 -2.39 -0.02 3.44 16 30 H 0.06 2.12 7.43 -2.39 -0.02 2.11 16 31 H 0.11 2.81 8.10 -2.39 -0.02 2.79 16 32 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.40 7.98 -2.39 -0.02 1.38 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 3.19 7.99 -2.39 -0.02 3.17 16 37 H 0.04 1.81 8.09 -2.39 -0.02 1.79 16 Total: -1.00 -64.24 299.26 4.99 -59.25 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.00 Total: 18.81 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 4.93 Total: 1.74 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.06 Total: -75.29 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.58 Total: -49.30 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.70 Total: 44.79 kcal Total: -64.24 4.99 -59.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576442896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.785 kcal (2) G-P(sol) polarization free energy of solvation -64.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds