Wall clock time and date at job start Mon Mar 30 2020 03:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99793 * 2 1 4 4 H 1.48494 * 109.47496 * 240.00373 * 3 2 1 5 5 H 1.48500 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46759 * 120.00225 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47337 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99782 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99926 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99921 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47156 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.27543 * 59.29672 * 16 15 14 18 18 C 1.54944 * 110.30885 * 181.38766 * 16 15 14 19 19 C 1.55566 * 100.82489 * 155.40344 * 18 16 15 20 20 C 1.54383 * 102.27674 * 325.88222 * 19 18 16 21 21 O 1.43235 * 107.58532 * 21.35887 * 20 19 18 22 22 H 0.96997 * 120.00412 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46830 * 60.00106 * 9 7 2 24 24 H 1.09000 * 109.46899 * 300.00501 * 9 7 2 25 25 H 1.09003 * 109.47109 * 59.99761 * 10 9 7 26 26 H 1.09004 * 109.47188 * 300.00237 * 10 9 7 27 27 H 1.09003 * 109.47237 * 59.99881 * 11 10 9 28 28 H 1.08996 * 109.47419 * 299.99954 * 11 10 9 29 29 H 0.97000 * 120.00176 * 0.02562 * 14 12 11 30 30 H 1.08994 * 109.47195 * 59.99796 * 15 14 12 31 31 H 1.09004 * 109.47000 * 300.00321 * 15 14 12 32 32 H 1.08997 * 111.13230 * 273.37566 * 18 16 15 33 33 H 1.09003 * 111.12649 * 37.53913 * 18 16 15 34 34 H 1.09007 * 110.84061 * 207.68390 * 19 18 16 35 35 H 1.09002 * 111.01266 * 84.16388 * 19 18 16 36 36 H 1.08995 * 109.83335 * 261.84022 * 20 19 18 37 37 H 1.09003 * 109.82742 * 140.86392 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4598 -6.1325 -0.0005 13 8 3.6521 -5.9108 -0.0009 14 7 2.0105 -7.4032 0.0004 15 6 2.9626 -8.5167 0.0004 16 6 2.1976 -9.8417 0.0009 17 1 1.5563 -9.9080 -0.8781 18 6 3.1868 -11.0337 0.0360 19 6 2.2912 -12.1381 0.6673 20 6 1.4081 -11.3280 1.6405 21 8 1.4153 -9.9653 1.1993 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6042 0.8895 26 1 2.8721 -3.6042 -0.8905 27 1 0.8534 -5.0451 -0.8897 28 1 0.8541 -5.0446 0.8903 29 1 1.0569 -7.5805 0.0011 30 1 3.5898 -8.4585 0.8898 31 1 3.5887 -8.4593 -0.8901 32 1 3.5047 -11.3103 -0.9692 33 1 4.0451 -10.8134 0.6708 34 1 2.8964 -12.8664 1.2073 35 1 1.6824 -12.6290 -0.0920 36 1 1.8149 -11.3921 2.6497 37 1 0.3896 -11.7160 1.6257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593933624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:01 Heat of formation + Delta-G solvation = -110.961063 kcal Electronic energy + Delta-G solvation = -16727.286180 eV Core-core repulsion = 13889.534627 eV Total energy + Delta-G solvation = -2837.751553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.02282 -39.05487 -34.77626 -34.06186 -32.54681 -31.99865 -30.51592 -27.89267 -25.64386 -23.54462 -22.11867 -21.56789 -20.46916 -19.62434 -17.35744 -16.97097 -16.13669 -15.89021 -15.71408 -15.41497 -14.88193 -14.38308 -13.98274 -13.48519 -13.45710 -12.87062 -12.48236 -12.20976 -12.16176 -11.87522 -11.66843 -11.54724 -11.26482 -11.23149 -10.73728 -10.55897 -10.50185 -9.86779 -9.61929 -9.60773 -9.20436 -8.96719 -8.92912 -8.27145 -5.93057 -3.94367 3.01692 3.21878 3.39855 3.42944 3.46870 3.55793 4.04056 4.36366 4.46669 4.53250 4.73672 4.79647 4.92878 5.23184 5.25232 5.29612 5.37357 5.41807 5.42760 5.54757 5.66478 5.77464 5.82265 5.83613 6.34345 6.51894 6.68827 6.80303 7.00650 7.23161 7.70679 7.76851 7.90138 8.08120 8.51927 8.55323 9.12661 9.69235 11.18492 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.072040 B = 0.003237 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.577844 B = 8646.707667 C = 8888.485753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.512 3.488 13 O -0.542 6.542 14 N -0.735 5.735 15 C 0.122 3.878 16 C 0.068 3.932 17 H 0.078 0.922 18 C -0.149 4.149 19 C -0.156 4.156 20 C 0.050 3.950 21 O -0.376 6.376 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.403 0.597 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -25.626 0.107 25.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.300 3.700 13 O -0.418 6.418 14 N -0.389 5.389 15 C -0.002 4.002 16 C 0.010 3.990 17 H 0.096 0.904 18 C -0.187 4.187 19 C -0.193 4.193 20 C -0.026 4.026 21 O -0.295 6.295 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.237 0.763 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.441 -25.169 0.212 25.288 hybrid contribution 0.009 0.515 -0.069 0.520 sum 2.450 -24.654 0.143 24.776 Atomic orbital electron populations 1.69955 1.06029 1.26609 1.51224 1.25022 0.94856 0.99220 0.95431 0.86651 0.79560 0.83085 0.78665 1.20244 1.21353 1.20242 1.21253 0.93165 0.91066 1.50140 0.92632 1.19130 0.93984 0.91443 0.97124 1.21440 0.98618 0.91587 1.01636 1.21835 0.98149 0.94054 1.03768 1.21264 0.90357 0.83741 0.74604 1.90664 1.17390 1.84790 1.48993 1.46018 1.10202 1.05524 1.77119 1.21436 0.92002 0.83965 1.02793 1.23266 0.92162 0.94727 0.88802 0.90383 1.23291 0.98625 0.94098 1.02667 1.23166 0.98397 0.98470 0.99313 1.23126 0.99750 0.81804 0.97969 1.88474 1.71974 1.26638 1.42441 0.93038 0.96607 0.96596 0.92742 0.92749 0.89413 0.89327 0.76295 0.91114 0.90460 0.89442 0.89770 0.89882 0.90417 0.91239 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -15.32 9.11 -34.44 -0.31 -15.64 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.13 4.44 -26.74 -0.12 -2.25 16 11 C -0.14 -2.42 5.70 -27.88 -0.16 -2.57 16 12 C 0.51 8.77 7.83 -10.98 -0.09 8.68 16 13 O -0.54 -11.35 15.98 5.56 0.09 -11.26 16 14 N -0.74 -9.57 5.49 -60.29 -0.33 -9.90 16 15 C 0.12 1.37 5.40 -4.04 -0.02 1.35 16 16 C 0.07 0.58 3.49 -25.71 -0.09 0.49 16 17 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 18 C -0.15 -0.94 6.59 -24.34 -0.16 -1.10 16 19 C -0.16 -0.84 7.03 -24.64 -0.17 -1.01 16 20 C 0.05 0.36 7.80 37.88 0.30 0.66 16 21 O -0.38 -3.86 10.94 -35.23 -0.39 -4.25 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 26 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.40 4.39 8.45 -40.82 -0.34 4.05 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.54 8.06 -51.93 -0.42 0.13 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 310.83 15.07 4.68 4.68 Total: -1.00 -34.43 310.83 -7.51 -41.94 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.22 Total: -2.28 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.06 Total: -9.44 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.41 Total: -36.74 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.30 Total: -15.51 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.43 -7.51 -41.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593933624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.023 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds