Wall clock time and date at job start Mon Mar 30 2020 03:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99793 * 2 1 4 4 H 1.48494 * 109.47496 * 240.00373 * 3 2 1 5 5 H 1.48500 * 109.47279 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46759 * 120.00225 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47029 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47337 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99782 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99926 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99921 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47156 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.27543 * 59.29672 * 16 15 14 18 18 C 1.54944 * 110.30885 * 181.38766 * 16 15 14 19 19 C 1.55566 * 100.82489 * 155.40344 * 18 16 15 20 20 C 1.54383 * 102.27674 * 325.88222 * 19 18 16 21 21 O 1.43235 * 107.58532 * 21.35887 * 20 19 18 22 22 H 0.96997 * 120.00412 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46830 * 60.00106 * 9 7 2 24 24 H 1.09000 * 109.46899 * 300.00501 * 9 7 2 25 25 H 1.09003 * 109.47109 * 59.99761 * 10 9 7 26 26 H 1.09004 * 109.47188 * 300.00237 * 10 9 7 27 27 H 1.09003 * 109.47237 * 59.99881 * 11 10 9 28 28 H 1.08996 * 109.47419 * 299.99954 * 11 10 9 29 29 H 0.97000 * 120.00176 * 0.02562 * 14 12 11 30 30 H 1.08994 * 109.47195 * 59.99796 * 15 14 12 31 31 H 1.09004 * 109.47000 * 300.00321 * 15 14 12 32 32 H 1.08997 * 111.13230 * 273.37566 * 18 16 15 33 33 H 1.09003 * 111.12649 * 37.53913 * 18 16 15 34 34 H 1.09007 * 110.84061 * 207.68390 * 19 18 16 35 35 H 1.09002 * 111.01266 * 84.16388 * 19 18 16 36 36 H 1.08995 * 109.83335 * 261.84022 * 20 19 18 37 37 H 1.09003 * 109.82742 * 140.86392 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 6 2.4598 -6.1325 -0.0005 13 8 3.6521 -5.9108 -0.0009 14 7 2.0105 -7.4032 0.0004 15 6 2.9626 -8.5167 0.0004 16 6 2.1976 -9.8417 0.0009 17 1 1.5563 -9.9080 -0.8781 18 6 3.1868 -11.0337 0.0360 19 6 2.2912 -12.1381 0.6673 20 6 1.4081 -11.3280 1.6405 21 8 1.4153 -9.9653 1.1993 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6042 0.8895 26 1 2.8721 -3.6042 -0.8905 27 1 0.8534 -5.0451 -0.8897 28 1 0.8541 -5.0446 0.8903 29 1 1.0569 -7.5805 0.0011 30 1 3.5898 -8.4585 0.8898 31 1 3.5887 -8.4593 -0.8901 32 1 3.5047 -11.3103 -0.9692 33 1 4.0451 -10.8134 0.6708 34 1 2.8964 -12.8664 1.2073 35 1 1.6824 -12.6290 -0.0920 36 1 1.8149 -11.3921 2.6497 37 1 0.3896 -11.7160 1.6257 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593933624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:00 Heat of formation + Delta-G solvation = -135.128156 kcal Electronic energy + Delta-G solvation = -16728.334144 eV Core-core repulsion = 13889.534627 eV Total energy + Delta-G solvation = -2838.799517 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96166 -40.12174 -36.24330 -35.73312 -34.02811 -33.11100 -31.46391 -29.60911 -26.79066 -25.27880 -22.74757 -22.38213 -22.05743 -21.08604 -18.64109 -17.99088 -17.83870 -16.99167 -16.74178 -16.60114 -16.42570 -15.70712 -15.15295 -14.83784 -14.35273 -14.21669 -13.77876 -13.71598 -13.54709 -13.04236 -12.67562 -12.59178 -12.51371 -12.46782 -12.25589 -12.17819 -11.71542 -11.55095 -11.46364 -11.27553 -10.75353 -10.53789 -10.50730 -10.10395 -8.19707 -6.30034 1.39675 1.43016 1.51089 1.65661 2.19072 2.42509 2.82359 3.12988 3.51758 3.75107 3.92617 3.98890 4.13728 4.19507 4.25508 4.27594 4.40566 4.58867 4.64773 4.81520 4.85794 4.92321 4.97350 5.00012 5.03644 5.11452 5.19551 5.24922 5.43417 5.54774 5.75863 5.87184 6.05330 6.27780 6.55408 6.85298 7.27010 7.38554 8.91795 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.072040 B = 0.003237 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.577844 B = 8646.707667 C = 8888.485753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.052 0.948 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.515 3.485 13 O -0.586 6.586 14 N -0.717 5.717 15 C 0.119 3.881 16 C 0.071 3.929 17 H 0.092 0.908 18 C -0.147 4.147 19 C -0.148 4.148 20 C 0.041 3.959 21 O -0.403 6.403 22 H 0.265 0.735 23 H 0.002 0.998 24 H 0.000 1.000 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.416 0.584 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 -26.807 -0.262 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.070 0.930 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.303 3.697 13 O -0.467 6.467 14 N -0.369 5.369 15 C -0.005 4.005 16 C 0.014 3.986 17 H 0.110 0.890 18 C -0.185 4.185 19 C -0.185 4.185 20 C -0.035 4.035 21 O -0.324 6.324 22 H 0.074 0.926 23 H 0.020 0.980 24 H 0.018 0.982 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.252 0.748 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.440 -26.402 -0.155 26.515 hybrid contribution -0.044 0.830 0.069 0.834 sum 2.396 -25.571 -0.086 25.684 Atomic orbital electron populations 1.70064 1.07541 1.27894 1.51523 1.25928 0.95845 1.03131 0.94638 0.85536 0.78374 0.78274 0.79083 1.19338 1.20298 1.19446 1.21679 0.93378 0.92828 1.50870 0.93004 1.19017 0.94199 0.92387 0.95510 1.21161 0.97630 0.92949 1.00290 1.21676 0.97944 0.91763 1.05655 1.21066 0.89384 0.84855 0.74430 1.90651 1.18975 1.85547 1.51510 1.45860 1.11343 1.04699 1.74996 1.21595 0.91991 0.84634 1.02239 1.23291 0.92670 0.93786 0.88877 0.88995 1.23317 0.98069 0.93327 1.03781 1.23161 0.98080 0.98116 0.99161 1.23314 1.00833 0.80925 0.98467 1.88436 1.72279 1.28550 1.43116 0.92625 0.97989 0.98189 0.94232 0.93934 0.87265 0.87713 0.74787 0.92682 0.90058 0.87663 0.90249 0.88495 0.89158 0.91321 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.55 -33.02 9.11 25.60 0.23 -32.79 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.08 -3.75 4.44 30.59 0.14 -3.62 16 11 C -0.13 -4.49 5.70 29.85 0.17 -4.32 16 12 C 0.51 17.36 7.83 87.66 0.69 18.04 16 13 O -0.59 -24.82 15.98 -3.02 -0.05 -24.86 16 14 N -0.72 -17.81 5.49 -463.07 -2.54 -20.35 16 15 C 0.12 2.56 5.40 86.38 0.47 3.03 16 16 C 0.07 1.09 3.49 31.26 0.11 1.20 16 17 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 18 C -0.15 -1.52 6.59 32.14 0.21 -1.31 16 19 C -0.15 -1.20 7.03 31.95 0.22 -0.98 16 20 C 0.04 0.52 7.80 72.45 0.56 1.08 16 21 O -0.40 -7.72 10.94 -148.98 -1.63 -9.35 16 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 25 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 26 H 0.04 2.01 8.10 -2.38 -0.02 1.99 16 27 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.42 8.29 8.45 -92.71 -0.78 7.51 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.91 8.06 -2.39 -0.02 0.89 16 34 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -74.40 310.83 1.76 -72.65 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.25 Total: 8.64 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.41 Total: -17.48 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.26 Total: -77.45 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.68 Total: -34.21 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.40 1.76 -72.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593933624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.483 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds