Wall clock time and date at job start Mon Mar 30 2020 03:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48491 * 109.47062 * 239.99901 * 3 2 1 5 5 H 1.48506 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47028 * 119.99709 * 3 2 1 7 7 C 1.37873 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00026 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47205 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47312 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47579 * 180.02562 * 11 10 9 13 13 O 1.21291 * 119.99601 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00281 * 180.02562 * 12 11 10 15 15 C 1.46919 * 120.63234 * 0.02562 * 14 12 11 16 16 C 1.53195 * 108.77845 * 233.62780 * 15 14 12 17 17 C 1.53039 * 109.31257 * 305.36660 * 16 15 14 18 18 C 1.53046 * 109.52798 * 61.36716 * 17 16 15 19 19 H 1.08998 * 109.49692 * 58.57850 * 18 17 16 20 20 O 1.42900 * 109.49686 * 178.67980 * 18 17 16 21 21 C 1.46931 * 120.63154 * 180.02562 * 14 12 11 22 22 H 0.97000 * 119.99999 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46791 * 59.99634 * 9 7 2 24 24 H 1.08999 * 109.46850 * 299.99695 * 9 7 2 25 25 H 1.09005 * 109.47159 * 60.00332 * 10 9 7 26 26 H 1.08995 * 109.47204 * 300.00356 * 10 9 7 27 27 H 1.09000 * 109.47087 * 59.99981 * 11 10 9 28 28 H 1.08995 * 109.47371 * 300.00369 * 11 10 9 29 29 H 1.08997 * 109.59005 * 113.84256 * 15 14 12 30 30 H 1.09002 * 109.70256 * 353.48493 * 15 14 12 31 31 H 1.08997 * 109.50026 * 185.40903 * 16 15 14 32 32 H 1.09000 * 109.49142 * 65.31548 * 16 15 14 33 33 H 1.09002 * 109.46050 * 181.38302 * 17 16 15 34 34 H 1.09004 * 109.46034 * 301.35518 * 17 16 15 35 35 H 0.96707 * 113.99505 * 299.99814 * 20 18 17 36 36 H 1.08998 * 109.58959 * 246.15740 * 21 14 12 37 37 H 1.09003 * 109.58181 * 6.44223 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4595 -6.1325 0.0018 13 8 3.6520 -5.9109 0.0013 14 7 2.0103 -7.4031 0.0019 15 6 0.5689 -7.6875 0.0009 16 6 0.2506 -8.6264 1.1688 17 6 1.1368 -9.8705 1.0740 18 6 2.6078 -9.4595 1.1717 19 1 2.7782 -8.9384 2.1137 20 8 3.4334 -10.6244 1.1140 21 6 2.9527 -8.5304 0.0031 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8906 26 1 2.8719 -3.6043 -0.8894 27 1 0.8533 -5.0451 -0.8886 28 1 0.8539 -5.0446 0.8913 29 1 0.2914 -8.1659 -0.9384 30 1 0.0109 -6.7583 0.1165 31 1 -0.7975 -8.9219 1.1229 32 1 0.4434 -8.1133 2.1109 33 1 0.8951 -10.5515 1.8901 34 1 0.9617 -10.3694 0.1208 35 1 3.2671 -11.2598 1.8239 36 1 2.8694 -9.0774 -0.9360 37 1 3.9699 -8.1561 0.1190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594233268.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:20 Heat of formation + Delta-G solvation = -109.621027 kcal Electronic energy + Delta-G solvation = -17337.730485 eV Core-core repulsion = 14500.037040 eV Total energy + Delta-G solvation = -2837.693445 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22487 -38.12130 -35.95935 -34.23228 -32.52416 -32.07326 -30.37179 -27.85802 -25.59253 -23.78352 -22.97541 -21.24808 -20.11217 -18.88255 -17.53758 -16.94386 -16.23359 -15.71783 -15.44879 -14.90684 -14.77245 -14.40491 -14.15120 -13.69499 -13.27707 -12.88956 -12.78668 -12.28663 -12.07838 -11.77408 -11.44692 -11.34865 -11.25747 -11.01400 -10.77523 -10.56569 -10.53094 -10.16041 -9.66271 -9.65564 -9.26147 -9.02159 -8.70497 -8.30640 -5.96614 -3.97975 2.82148 2.92007 3.37710 3.40904 3.44998 4.01844 4.37479 4.50276 4.50673 4.63135 4.86515 4.90745 5.02259 5.17390 5.33014 5.39451 5.52058 5.53617 5.60064 5.65095 5.68853 5.72292 5.82687 5.95945 6.23873 6.46435 6.73275 6.94032 7.16837 7.30014 7.43637 7.71657 7.84532 8.03983 8.38215 8.48176 9.08842 9.65936 11.14874 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.004055 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.743475 B = 6903.294110 C = 7273.208870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.136 4.136 12 C 0.516 3.484 13 O -0.534 6.534 14 N -0.619 5.619 15 C 0.103 3.897 16 C -0.134 4.134 17 C -0.151 4.151 18 C 0.091 3.909 19 H 0.059 0.941 20 O -0.565 6.565 21 C 0.119 3.881 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.015 0.985 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.380 0.620 36 H 0.071 0.929 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 -21.333 2.470 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.176 4.176 12 C 0.306 3.694 13 O -0.410 6.410 14 N -0.356 5.356 15 C -0.020 4.020 16 C -0.173 4.173 17 C -0.189 4.189 18 C 0.031 3.969 19 H 0.077 0.923 20 O -0.370 6.370 21 C -0.005 4.005 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.227 0.773 36 H 0.089 0.911 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.800 -20.766 1.937 20.872 hybrid contribution -0.005 0.498 0.552 0.743 sum -0.804 -20.269 2.489 20.437 Atomic orbital electron populations 1.69951 1.06031 1.26640 1.51167 1.25012 0.94855 0.99224 0.95366 0.86651 0.79574 0.83055 0.78699 1.20216 1.21336 1.20232 1.21240 0.93177 0.91029 1.50245 0.92621 1.19125 0.93945 0.91433 0.97098 1.21469 0.98681 0.91511 1.01744 1.21871 0.98149 0.93966 1.03595 1.21332 0.90314 0.83289 0.74421 1.90677 1.17377 1.84082 1.48852 1.48147 1.06622 1.05590 1.75255 1.21797 0.80934 1.00766 0.98473 1.21906 1.00023 0.95895 0.99457 1.22268 0.95430 0.98231 1.02977 1.22138 0.89169 0.86511 0.99043 0.92259 1.86472 1.62790 1.32549 1.55184 1.21238 0.95355 0.86734 0.97128 0.93024 0.96600 0.96618 0.92700 0.92645 0.89285 0.89336 0.91231 0.88587 0.90122 0.91087 0.91480 0.90897 0.77314 0.91099 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.10 4.44 -26.74 -0.12 -2.22 16 11 C -0.14 -2.28 4.05 -27.89 -0.11 -2.39 16 12 C 0.52 8.68 7.70 -10.99 -0.08 8.59 16 13 O -0.53 -11.08 15.39 5.55 0.09 -11.00 16 14 N -0.62 -8.01 2.97 -172.75 -0.51 -8.53 16 15 C 0.10 0.97 6.34 -3.71 -0.02 0.95 16 16 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 17 C -0.15 -1.13 5.51 -26.69 -0.15 -1.27 16 18 C 0.09 0.89 3.62 -26.59 -0.10 0.80 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 20 O -0.56 -5.32 13.32 -35.23 -0.47 -5.79 16 21 C 0.12 1.46 6.09 -3.69 -0.02 1.44 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 26 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.09 1.35 7.94 -51.93 -0.41 0.94 16 28 H 0.09 1.33 7.70 -51.93 -0.40 0.93 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.88 5.95 -51.93 -0.31 0.57 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.38 1.85 9.08 45.56 0.41 2.26 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.44 7.00 -51.93 -0.36 1.08 16 LS Contribution 302.39 15.07 4.56 4.56 Total: -1.00 -34.13 302.39 -7.20 -41.33 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.26 Total: -2.53 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.32 Total: -8.75 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.22 Total: -34.91 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.38 Total: -16.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.13 -7.20 -41.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594233268.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.289 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds